RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 TAS1R3Q7RTX0 852 aa9.5□□□□□ -0.89
BRCA1-229ENST00000621897 SERTAD1Q9UHV2 236 aa9.5□□□□□ -0.89
BRCA1-229ENST00000621897 LORP23490 312 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-229ENST00000621897 PLEKHM2Q8IWE5 1019 aa9.49□□□□□ -0.89
BRCA1-229ENST00000621897 GAS2L1Q99501 681 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-229ENST00000621897 DYRK1BQ9Y463 629 aa9.49□□□□□ -0.89
BRCA1-229ENST00000621897 C4orf17Q53FE4 359 aa9.48□□□□□ -0.89
BRCA1-229ENST00000621897 TMEM214Q6NUQ4 689 aaKnown RBP9.48□□□□□ -0.89
BRCA1-229ENST00000621897 CALR3Q96L12 384 aaKnown RBP9.48□□□□□ -0.89
BRCA1-229ENST00000621897 KIAA1024Q9UPX6 916 aa9.48□□□□□ -0.89
BRCA1-229ENST00000621897 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
BRCA1-229ENST00000621897 RIPOR1Q6ZS17 1223 aa9.47□□□□□ -0.89
BRCA1-229ENST00000621897 SV2AQ7L0J3 742 aa9.47□□□□□ -0.89
BRCA1-229ENST00000621897 PPARGC1BQ86YN6 1023 aaKnown RBP9.47□□□□□ -0.89
BRCA1-229ENST00000621897 TIMMDC1Q9NPL8 285 aa9.47□□□□□ -0.89
BRCA1-229ENST00000621897 TFIP11Q9UBB9 837 aaKnown RBP9.47□□□□□ -0.89
BRCA1-229ENST00000621897 SMTNP53814 917 aa9.46□□□□□ -0.9
BRCA1-229ENST00000621897 CLDN10P78369 228 aa9.46□□□□□ -0.9
BRCA1-229ENST00000621897 INSM1Q01101 510 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-229ENST00000621897 PSME1Q06323 249 aa9.46□□□□□ -0.9
BRCA1-229ENST00000621897 DBN1Q16643 649 aa9.46□□□□□ -0.9
BRCA1-229ENST00000621897 RNFT1Q5M7Z0 435 aa9.46□□□□□ -0.9
BRCA1-229ENST00000621897 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.46□□□□□ -0.9
BRCA1-229ENST00000621897 ZNF837Q96EG3 531 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-229ENST00000621897 COL25A1Q9BXS0 654 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-229ENST00000621897 ZNF777Q9ULD5 760 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-229ENST00000621897 MAFBQ9Y5Q3 323 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-229ENST00000621897 USP3Q9Y6I4 520 aa9.46□□□□□ -0.9
BRCA1-229ENST00000621897 PALM3A6NDB9 673 aaPredicted RBP9.45□□□□□ -0.9
BRCA1-229ENST00000621897 ZBTB7BO15156 539 aaPredicted RBP9.45□□□□□ -0.9
BRCA1-229ENST00000621897 GNASQ5JWF2 1037 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 TRIM22Q8IYM9 498 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 RHBDD1Q8TEB9 315 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 CNTNAP3BQ96NU0 1288 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 SLC4A9Q96Q91 983 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 CNTNAP3Q9BZ76 1288 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 ZNF358Q9NW07 568 aa9.45□□□□□ -0.9
BRCA1-229ENST00000621897 ZNF295-AS1Q8N0V1 137 aa9.44□□□□□ -0.9
BRCA1-229ENST00000621897 PPP1R12CQ9BZL4 782 aa9.44□□□□□ -0.9
BRCA1-229ENST00000621897 GPAMQ9HCL2 828 aa9.44□□□□□ -0.9
BRCA1-229ENST00000621897 MKRN1Q9UHC7 482 aaKnown RBP9.44□□□□□ -0.9
BRCA1-229ENST00000621897 GTF3C3Q9Y5Q9 886 aa9.44□□□□□ -0.9
BRCA1-229ENST00000621897 A6NJY4 79 aa9.43□□□□□ -0.9
BRCA1-229ENST00000621897 THBS1P07996 1170 aa9.43□□□□□ -0.9
BRCA1-229ENST00000621897 GTF2E1P29083 439 aaPredicted RBP9.43□□□□□ -0.9
BRCA1-229ENST00000621897 MTFR1Q15390 333 aa9.43□□□□□ -0.9
BRCA1-229ENST00000621897 TRIM50Q86XT4 487 aa9.43□□□□□ -0.9
BRCA1-229ENST00000621897 IQSEC3Q9UPP2 1182 aaPredicted RBP9.43□□□□□ -0.9
BRCA1-229ENST00000621897 GPR25O00155 361 aa9.42□□□□□ -0.9
BRCA1-229ENST00000621897 F11P03951 625 aa9.42□□□□□ -0.9
BRCA1-229ENST00000621897 PLA2G4AP47712 749 aa9.42□□□□□ -0.9
BRCA1-229ENST00000621897 GAS6Q14393 721 aa9.42□□□□□ -0.9
BRCA1-229ENST00000621897 OGFOD1Q8N543 542 aa9.42□□□□□ -0.9
BRCA1-229ENST00000621897 TPCN2Q8NHX9 752 aa9.42□□□□□ -0.9
BRCA1-229ENST00000621897 A0A1B0GTH6 734 aa9.41□□□□□ -0.9
BRCA1-229ENST00000621897 ZSCAN1Q8NBB4 408 aa9.41□□□□□ -0.9
BRCA1-229ENST00000621897 DNAAF2Q9NVR5 837 aaKnown RBP9.41□□□□□ -0.9
BRCA1-229ENST00000621897 MSX1P28360 303 aa9.4□□□□□ -0.9
BRCA1-229ENST00000621897 ATP1A2P50993 1020 aa9.4□□□□□ -0.9
BRCA1-229ENST00000621897 EPHA4P54764 986 aa9.4□□□□□ -0.9
BRCA1-229ENST00000621897 CCDC102BQ68D86 513 aa9.4□□□□□ -0.9
BRCA1-229ENST00000621897 GTPBP3Q969Y2 492 aaKnown RBP9.4□□□□□ -0.9
BRCA1-229ENST00000621897 ZNF594Q96JF6 807 aaPredicted RBP9.4□□□□□ -0.9
BRCA1-229ENST00000621897 CDK2AP1O14519 115 aa9.39□□□□□ -0.91
BRCA1-229ENST00000621897 DKK1O94907 266 aa9.39□□□□□ -0.91
BRCA1-229ENST00000621897 TNS4Q8IZW8 715 aa9.39□□□□□ -0.91
BRCA1-229ENST00000621897 GMCL1Q96IK5 515 aa9.39□□□□□ -0.91
BRCA1-229ENST00000621897 NIFKQ9BYG3 293 aaKnown RBP9.39□□□□□ -0.91
BRCA1-229ENST00000621897 NUCKS1Q9H1E3 243 aaKnown RBP9.39□□□□□ -0.91
BRCA1-229ENST00000621897 RUBCNLQ9H714 662 aa9.39□□□□□ -0.91
BRCA1-229ENST00000621897 H7C1W4 665 aa9.38□□□□□ -0.91
BRCA1-229ENST00000621897 BACH1O14867 736 aa9.38□□□□□ -0.91
BRCA1-229ENST00000621897 LMOD1P29536 600 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-229ENST00000621897 TBCELQ5QJ74 424 aa9.38□□□□□ -0.91
BRCA1-229ENST00000621897 LARGE2Q8N3Y3 721 aa9.38□□□□□ -0.91
BRCA1-229ENST00000621897 ZMYND15Q9H091 742 aa9.38□□□□□ -0.91
BRCA1-229ENST00000621897 SCHIP1Q9P0W5 487 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-229ENST00000621897 SFI1A8K8P3 1242 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 ATP4AP20648 1035 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 RASA1P20936 1047 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 FOXK2Q01167 660 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 UBAP2LQ14157 1087 aaKnown RBP9.37□□□□□ -0.91
BRCA1-229ENST00000621897 CFAP70Q5T0N1 1121 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 KANK4Q5T7N3 995 aaPredicted RBP9.37□□□□□ -0.91
BRCA1-229ENST00000621897 SIX5Q8N196 739 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 STK17AQ9UEE5 414 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 PARP3Q9Y6F1 533 aa9.37□□□□□ -0.91
BRCA1-229ENST00000621897 ZDHHC1Q8WTX9 485 aa9.36□□□□□ -0.91
BRCA1-229ENST00000621897 CABP1Q9NZU7 370 aa9.36□□□□□ -0.91
BRCA1-229ENST00000621897 CRTC2Q53ET0 693 aaPredicted RBP9.35□□□□□ -0.91
BRCA1-229ENST00000621897 SLC9A9Q8IVB4 645 aa9.35□□□□□ -0.91
BRCA1-229ENST00000621897 AIDAQ96BJ3 306 aa9.35□□□□□ -0.91
BRCA1-229ENST00000621897 TSEN2Q8NCE0 465 aaKnown RBP9.34□□□□□ -0.91
BRCA1-229ENST00000621897 WHAMMQ8TF30 809 aa9.34□□□□□ -0.91
BRCA1-229ENST00000621897 CRISPLD1Q9H336 500 aa9.34□□□□□ -0.91
BRCA1-229ENST00000621897 SH3PXD2AQ5TCZ1 1133 aa9.33□□□□□ -0.92
BRCA1-229ENST00000621897 TSPAN10Q9H1Z9 355 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-229ENST00000621897 ADAMTS2O95450 1211 aa9.32□□□□□ -0.92
BRCA1-229ENST00000621897 SLURP2P0DP57 97 aa9.32□□□□□ -0.92
BRCA1-229ENST00000621897 CSB-PGBD3P0DP91 1061 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms