RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 SMARCA5O60264 1052 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 MAP4K4O95819 1239 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 FOXD4L6Q3SYB3 417 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 FOXD4L3Q6VB84 417 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 TEX13AQ9BXU3 409 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 SLC39A6Q13433 755 aa16.75■□□□□ 0.27
CIITA-213ENST00000618327 BLMP54132 1417 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 IGHDP01880 384 aa16.75■□□□□ 0.27
CIITA-213ENST00000618327 CCDC85AQ96PX6 553 aaPredicted RBP16.75■□□□□ 0.27
CIITA-213ENST00000618327 CHPF2Q9P2E5 772 aa16.75■□□□□ 0.27
CIITA-213ENST00000618327 NUTM1Q86Y26 1132 aa16.74■□□□□ 0.27
CIITA-213ENST00000618327 NPHP4O75161 1426 aaPredicted RBP16.74■□□□□ 0.27
CIITA-213ENST00000618327 RABEP1Q15276 862 aa16.74■□□□□ 0.27
CIITA-213ENST00000618327 KRT24Q2M2I5 525 aa16.74■□□□□ 0.27
CIITA-213ENST00000618327 TRIM35Q9UPQ4 493 aa16.74■□□□□ 0.27
CIITA-213ENST00000618327 IL2RBP14784 551 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 PSMA5P28066 241 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 NEK4P51957 841 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 RALYLQ86SE5 291 aaKnown RBP16.73■□□□□ 0.27
CIITA-213ENST00000618327 FAM135BQ49AJ0 1406 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 ZMYM4Q5VZL5 1548 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 CPLX1O14810 134 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 FBXW7Q969H0 707 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 INO80Q9ULG1 1556 aaPredicted RBP16.73■□□□□ 0.27
CIITA-213ENST00000618327 MX1P20591 662 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 E9PCH4 1651 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 LMTK2Q8IWU2 1503 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 AKAP17AQ02040 695 aaKnown RBP16.73■□□□□ 0.27
CIITA-213ENST00000618327 SMC3Q9UQE7 1217 aa16.73■□□□□ 0.27
CIITA-213ENST00000618327 A0A087WZG4 1122 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 ZBTB3Q9H5J0 574 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 DDX49Q9Y6V7 483 aaKnown RBP16.72■□□□□ 0.27
CIITA-213ENST00000618327 TRPM1Q7Z4N2 1603 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 LMTK3Q96Q04 1460 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 SLAIN2Q9P270 581 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 PCDHB15Q9Y5E8 787 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 SF3A1Q15459 793 aaKnown RBP16.72■□□□□ 0.27
CIITA-213ENST00000618327 NUCB2P80303 420 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 NFATC2IPQ8NCF5 419 aa16.72■□□□□ 0.27
CIITA-213ENST00000618327 DDX17Q92841 729 aaKnown RBP16.72■□□□□ 0.27
CIITA-213ENST00000618327 ATP7BP35670 1465 aa16.71■□□□□ 0.27
CIITA-213ENST00000618327 TNNQ9UQP3 1299 aa16.71■□□□□ 0.27
CIITA-213ENST00000618327 ZNF652Q9Y2D9 606 aa16.71■□□□□ 0.27
CIITA-213ENST00000618327 HSP90AB3PQ58FF7 597 aa16.71■□□□□ 0.27
CIITA-213ENST00000618327 BICDL1Q6ZP65 573 aa16.71■□□□□ 0.27
CIITA-213ENST00000618327 TULP1O00294 542 aaPredicted RBP16.71■□□□□ 0.27
CIITA-213ENST00000618327 MEIS3Q99687 375 aa16.71■□□□□ 0.27
CIITA-213ENST00000618327 DIP2CQ9Y2E4 1556 aa16.7■□□□□ 0.26
CIITA-213ENST00000618327 CEP152O94986 1710 aa16.7■□□□□ 0.26
CIITA-213ENST00000618327 RLBP1P12271 317 aa16.7■□□□□ 0.26
CIITA-213ENST00000618327 HDAC1Q13547 482 aaPredicted RBP16.7■□□□□ 0.26
CIITA-213ENST00000618327 NCBP3Q53F19 620 aaKnown RBP16.7■□□□□ 0.26
CIITA-213ENST00000618327 MCTP1Q6DN14 999 aa16.7■□□□□ 0.26
CIITA-213ENST00000618327 ANKRD13DQ6ZTN6 518 aa16.7■□□□□ 0.26
CIITA-213ENST00000618327 DCAF5Q96JK2 942 aa16.7■□□□□ 0.26
CIITA-213ENST00000618327 GNL3LQ9NVN8 582 aaKnown RBP16.7■□□□□ 0.26
CIITA-213ENST00000618327 RNMTO43148 476 aaKnown RBP16.7■□□□□ 0.26
CIITA-213ENST00000618327 TNNT3P45378 269 aaPredicted RBP16.69■□□□□ 0.26
CIITA-213ENST00000618327 HSP90AA2PQ14568 343 aaPredicted RBP16.69■□□□□ 0.26
CIITA-213ENST00000618327 NFXL1Q6ZNB6 911 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 PRR36Q9H6K5 1346 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 GLRX3O76003 335 aaKnown RBP16.69■□□□□ 0.26
CIITA-213ENST00000618327 SKOR2Q2VWA4 1001 aaPredicted RBP16.69■□□□□ 0.26
CIITA-213ENST00000618327 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.69■□□□□ 0.26
CIITA-213ENST00000618327 TMEM94Q12767 1356 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 ATP5J2-PTCD1G3V325 749 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 MCM2P49736 904 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 PHF23Q9BUL5 403 aaPredicted RBP16.69■□□□□ 0.26
CIITA-213ENST00000618327 ERICH2A1L162 156 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 CCDC34Q96HJ3 373 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 DNAJC5Q9H3Z4 198 aa16.69■□□□□ 0.26
CIITA-213ENST00000618327 FKBP4Q02790 459 aaKnown RBP eCLIP16.68■□□□□ 0.26
CIITA-213ENST00000618327 NBPF6Q5VWK0 638 aa16.68■□□□□ 0.26
CIITA-213ENST00000618327 NBPF4Q96M43 638 aa16.68■□□□□ 0.26
CIITA-213ENST00000618327 ARHGEF10O15013 1369 aa16.68■□□□□ 0.26
CIITA-213ENST00000618327 PPP1R42Q7Z4L9 355 aa16.68■□□□□ 0.26
CIITA-213ENST00000618327 XAGE3Q8WTP9 111 aa16.68■□□□□ 0.26
CIITA-213ENST00000618327 ADGRB3O60242 1522 aa16.68■□□□□ 0.26
CIITA-213ENST00000618327 VPS37CA5D8V6 355 aaPredicted RBP16.67■□□□□ 0.26
CIITA-213ENST00000618327 COPS6Q7L5N1 327 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 TRMT112Q9UI30 125 aaKnown RBP16.67■□□□□ 0.26
CIITA-213ENST00000618327 CWC27Q6UX04 472 aaKnown RBP16.67■□□□□ 0.26
CIITA-213ENST00000618327 PHF14O94880 888 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 UBE3BQ7Z3V4 1068 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 CHL1O00533 1208 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 IGHMBP2P38935 993 aaKnown RBP16.67■□□□□ 0.26
CIITA-213ENST00000618327 DDB1Q16531 1140 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 BTG4Q9NY30 223 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 AATKQ6ZMQ8 1374 aa16.67■□□□□ 0.26
CIITA-213ENST00000618327 CWC25Q9NXE8 425 aaPredicted RBP16.66■□□□□ 0.26
CIITA-213ENST00000618327 GPTP24298 496 aa16.66■□□□□ 0.26
CIITA-213ENST00000618327 KSR2Q6VAB6 950 aa16.66■□□□□ 0.26
CIITA-213ENST00000618327 ZPR1O75312 459 aa16.66■□□□□ 0.26
CIITA-213ENST00000618327 HMGB2P26583 209 aaKnown RBP16.66■□□□□ 0.26
CIITA-213ENST00000618327 TRIM29Q14134 588 aa16.66■□□□□ 0.26
CIITA-213ENST00000618327 METTL24Q5JXM2 366 aa16.66■□□□□ 0.26
CIITA-213ENST00000618327 IFIT5Q13325 482 aaKnown RBP16.66■□□□□ 0.26
CIITA-213ENST00000618327 SF3B2Q13435 895 aaKnown RBP16.66■□□□□ 0.26
CIITA-213ENST00000618327 BABAM1Q9NWV8 329 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 SOS1Q07889 1333 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms