RNA–Protein interactions for RNA: ENST00000617222.4

PCDHGC3-204, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3 BASIC

Gene PCDHGC3, Length 731 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-204ENST00000617222 APBA3O96018 575 aa20.4■□□□□ 0.86
PCDHGC3-204ENST00000617222 WDR63Q8IWG1 891 aa20.4■□□□□ 0.86
PCDHGC3-204ENST00000617222 ATG3Q9NT62 314 aa20.4■□□□□ 0.86
PCDHGC3-204ENST00000617222 ADAMTS7Q9UKP4 1686 aa20.4■□□□□ 0.86
PCDHGC3-204ENST00000617222 SCN11AQ9UI33 1791 aa20.39■□□□□ 0.86
PCDHGC3-204ENST00000617222 DOT1LQ8TEK3 1739 aa20.39■□□□□ 0.86
PCDHGC3-204ENST00000617222 ZNF521Q96K83 1311 aa20.39■□□□□ 0.85
PCDHGC3-204ENST00000617222 SF3B2Q13435 895 aaKnown RBP20.39■□□□□ 0.85
PCDHGC3-204ENST00000617222 MRC1P22897 1456 aa20.38■□□□□ 0.85
PCDHGC3-204ENST00000617222 KCNQ3O43525 872 aa20.38■□□□□ 0.85
PCDHGC3-204ENST00000617222 UPF1Q92900 1129 aaKnown RBP eCLIP20.38■□□□□ 0.85
PCDHGC3-204ENST00000617222 YTHDC1Q96MU7 727 aaKnown RBP20.38■□□□□ 0.85
PCDHGC3-204ENST00000617222 CHL1O00533 1208 aa20.37■□□□□ 0.85
PCDHGC3-204ENST00000617222 SMARCC1Q92922 1105 aaPredicted RBP20.37■□□□□ 0.85
PCDHGC3-204ENST00000617222 CFAP44Q96MT7 982 aa20.37■□□□□ 0.85
PCDHGC3-204ENST00000617222 IFT57Q9NWB7 429 aa20.37■□□□□ 0.85
PCDHGC3-204ENST00000617222 TSPYL4Q9UJ04 414 aa20.37■□□□□ 0.85
PCDHGC3-204ENST00000617222 NHSQ6T4R5 1651 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 IL16Q14005 1332 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 ZNF853P0CG23 659 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 GNAI1P63096 354 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 ZNF790Q6PG37 636 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 CCDC125Q86Z20 511 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 TTC5Q8N0Z6 440 aa20.36■□□□□ 0.85
PCDHGC3-204ENST00000617222 SBF2Q86WG5 1849 aa20.35■□□□□ 0.85
PCDHGC3-204ENST00000617222 GOLGA2Q08379 1002 aa20.35■□□□□ 0.85
PCDHGC3-204ENST00000617222 BABAM1Q9NWV8 329 aa20.35■□□□□ 0.85
PCDHGC3-204ENST00000617222 PTCD1O75127 700 aaKnown RBP20.34■□□□□ 0.85
PCDHGC3-204ENST00000617222 RBM42Q9BTD8 480 aaKnown RBP20.34■□□□□ 0.85
PCDHGC3-204ENST00000617222 SPINK5Q9NQ38 1064 aaPredicted RBP20.34■□□□□ 0.85
PCDHGC3-204ENST00000617222 ITGB4P16144 1822 aa20.34■□□□□ 0.85
PCDHGC3-204ENST00000617222 PALLDQ8WX93 1383 aa20.34■□□□□ 0.85
PCDHGC3-204ENST00000617222 MBIPQ9NS73 344 aa20.33■□□□□ 0.85
PCDHGC3-204ENST00000617222 ZBED9Q6R2W3 1325 aa20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 PLSCR1O15162 318 aa20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 BAG6P46379 1132 aa20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 EN1Q05925 392 aaPredicted RBP20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 DEFB132Q7Z7B7 95 aa20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 CDCA7LQ96GN5 454 aa20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 ZNF496Q96IT1 587 aaPredicted RBP20.32■□□□□ 0.84
PCDHGC3-204ENST00000617222 TSR2Q969E8 191 aaKnown RBP20.31■□□□□ 0.84
PCDHGC3-204ENST00000617222 VIRMAQ69YN4 1812 aaKnown RBP20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 LOC102724428A0A0B4J2F2 783 aa20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 E9PSI1 815 aa20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 SIK1P57059 783 aa20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 EIF4A1P60842 406 aaKnown RBP20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 SLFN5Q08AF3 891 aa20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 FMNL2Q96PY5 1086 aa20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 BTAF1O14981 1849 aa20.3■□□□□ 0.84
PCDHGC3-204ENST00000617222 KCNQ4P56696 695 aa20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 EZH2Q15910 746 aaKnown RBP20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 TXNRD1Q16881 649 aa20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 PROM2Q8N271 834 aa20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 SLC4A9Q96Q91 983 aa20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 CAMKK2Q96RR4 588 aa20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 MYH16Q9H6N6 1097 aa20.29■□□□□ 0.84
PCDHGC3-204ENST00000617222 ATP6V1AP38606 617 aa20.28■□□□□ 0.84
PCDHGC3-204ENST00000617222 CCNL1Q9UK58 526 aaPredicted RBP20.28■□□□□ 0.84
PCDHGC3-204ENST00000617222 SIPA1L3O60292 1781 aaPredicted RBP20.28■□□□□ 0.84
PCDHGC3-204ENST00000617222 FANCIQ9NVI1 1328 aa20.27■□□□□ 0.84
PCDHGC3-204ENST00000617222 KRT24Q2M2I5 525 aa20.26■□□□□ 0.83
PCDHGC3-204ENST00000617222 EP400Q96L91 3159 aa20.26■□□□□ 0.83
PCDHGC3-204ENST00000617222 TNS1Q9HBL0 1735 aaKnown RBP20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 HEG1Q9ULI3 1381 aa20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 SNRPA1P09661 255 aaKnown RBP20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 ITPK1Q13572 414 aa20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 SLC27A3Q5K4L6 730 aa20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 DNAJC10Q8IXB1 793 aa20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 VSIG10Q8N0Z9 540 aa20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 LRRC4BQ9NT99 713 aa20.25■□□□□ 0.83
PCDHGC3-204ENST00000617222 KCPQ6ZWJ8 1503 aa20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 PRAMEF22A3QJZ6 481 aa20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 ELL2O00472 640 aaPredicted RBP20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 GIGYF1O75420 1035 aaPredicted RBP20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 EXOSC9Q06265 439 aaKnown RBP20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 TRMT2AQ8IZ69 625 aaKnown RBP20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 C8orf58Q8NAV2 365 aa20.24■□□□□ 0.83
PCDHGC3-204ENST00000617222 DUSP27Q5VZP5 1158 aa20.22■□□□□ 0.83
PCDHGC3-204ENST00000617222 TEX13AQ9BXU3 409 aaPredicted RBP20.22■□□□□ 0.83
PCDHGC3-204ENST00000617222 USP16Q9Y5T5 823 aa20.22■□□□□ 0.83
PCDHGC3-204ENST00000617222 PAPPAQ13219 1627 aa20.22■□□□□ 0.83
PCDHGC3-204ENST00000617222 TSPYL6Q8N831 410 aa20.21■□□□□ 0.83
PCDHGC3-204ENST00000617222 LINC00116Q8NCU8 138 aa20.21■□□□□ 0.83
PCDHGC3-204ENST00000617222 KDM3BQ7LBC6 1761 aa20.21■□□□□ 0.83
PCDHGC3-204ENST00000617222 STARD3NLO95772 234 aa20.19■□□□□ 0.82
PCDHGC3-204ENST00000617222 CYP19A1P11511 503 aaPredicted RBP20.19■□□□□ 0.82
PCDHGC3-204ENST00000617222 EIF2S2P20042 333 aaKnown RBP20.19■□□□□ 0.82
PCDHGC3-204ENST00000617222 SOCS7O14512 581 aa20.18■□□□□ 0.82
PCDHGC3-204ENST00000617222 TWISTNBQ3B726 338 aaPredicted RBP20.18■□□□□ 0.82
PCDHGC3-204ENST00000617222 NECTIN2Q92692 538 aa20.18■□□□□ 0.82
PCDHGC3-204ENST00000617222 HMGB2P26583 209 aaKnown RBP20.17■□□□□ 0.82
PCDHGC3-204ENST00000617222 LY75O60449 1722 aa20.16■□□□□ 0.82
PCDHGC3-204ENST00000617222 UBR2Q8IWV8 1755 aa20.16■□□□□ 0.82
PCDHGC3-204ENST00000617222 VAMP4O75379 141 aa20.16■□□□□ 0.82
PCDHGC3-204ENST00000617222 A1BGP04217 495 aa20.16■□□□□ 0.82
PCDHGC3-204ENST00000617222 HOXB7P09629 217 aa20.16■□□□□ 0.82
PCDHGC3-204ENST00000617222 CRKLP46109 303 aaKnown RBP20.16■□□□□ 0.82
PCDHGC3-204ENST00000617222 HDGFL1Q5TGJ6 251 aa20.15■□□□□ 0.82
PCDHGC3-204ENST00000617222 SOS1Q07889 1333 aaPredicted RBP20.14■□□□□ 0.81
PCDHGC3-204ENST00000617222 RC3H1Q5TC82 1133 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms