RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	TOGARAM1	Q9Y4F4	1720 aa		13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	BTBD11	A6QL63	1104 aa		13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	CALD1	Q05682	793 aa	Known RBP	13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	EN1	Q05925	392 aa	Predicted RBP	13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	THUMPD2	Q9BTF0	503 aa	Known RBP	13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	BABAM1	Q9NWV8	329 aa		13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	ASAP1	Q9ULH1	1129 aa		13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	SBF2	Q86WG5	1849 aa		13.76	□□□□□ -0.21
PVT1-223	ENST00000615442	HMGB2	P26583	209 aa	Known RBP	13.75	□□□□□ -0.21
PVT1-223	ENST00000615442	DEFB132	Q7Z7B7	95 aa		13.75	□□□□□ -0.21
PVT1-223	ENST00000615442	WWC1	Q8IX03	1113 aa		13.75	□□□□□ -0.21
PVT1-223	ENST00000615442	SCN11A	Q9UI33	1791 aa		13.75	□□□□□ -0.21
PVT1-223	ENST00000615442	PALLD	Q8WX93	1383 aa		13.74	□□□□□ -0.21
PVT1-223	ENST00000615442	SLC27A3	Q5K4L6	730 aa		13.74	□□□□□ -0.21
PVT1-223	ENST00000615442	TNS1	Q9HBL0	1735 aa	Known RBP	13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	EZH2	Q15910	746 aa	Known RBP	13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	TXNRD1	Q16881	649 aa		13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	ZNF790	Q6PG37	636 aa		13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	WDR63	Q8IWG1	891 aa		13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	TTC5	Q8N0Z6	440 aa		13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	PROM2	Q8N271	834 aa		13.73	□□□□□ -0.21
PVT1-223	ENST00000615442	LOC102724428	A0A0B4J2F2	783 aa		13.72	□□□□□ -0.21
PVT1-223	ENST00000615442	CHL1	O00533	1208 aa		13.72	□□□□□ -0.21
PVT1-223	ENST00000615442	SIK1	P57059	783 aa		13.72	□□□□□ -0.21
PVT1-223	ENST00000615442	SLC39A6	Q13433	755 aa		13.72	□□□□□ -0.21
PVT1-223	ENST00000615442	CFAP44	Q96MT7	982 aa		13.72	□□□□□ -0.21
PVT1-223	ENST00000615442	SALL2	Q9Y467	1007 aa	Predicted RBP	13.72	□□□□□ -0.21
PVT1-223	ENST00000615442	SENP3-EIF4A1	A0A087X0R7	540 aa		13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	GNAI1	P63096	354 aa		13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	VSIG10	Q8N0Z9	540 aa		13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	RBM42	Q9BTD8	480 aa	Known RBP	13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	IFT57	Q9NWB7	429 aa		13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	MIS18A	Q9NYP9	233 aa		13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	CCNL1	Q9UK58	526 aa	Predicted RBP	13.71	□□□□□ -0.21
PVT1-223	ENST00000615442	BTAF1	O14981	1849 aa		13.71	□□□□□ -0.22
PVT1-223	ENST00000615442	ITGB4	P16144	1822 aa		13.71	□□□□□ -0.22
PVT1-223	ENST00000615442	IL16	Q14005	1332 aa		13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	PTCD1	O75127	700 aa	Known RBP	13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	ZNF853	P0CG23	659 aa		13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	ATP6V1A	P38606	617 aa		13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	FMNL2	Q96PY5	1086 aa		13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	TSPYL4	Q9UJ04	414 aa		13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	DLG5	Q8TDM6	1919 aa		13.7	□□□□□ -0.22
PVT1-223	ENST00000615442	KCNQ3	O43525	872 aa		13.69	□□□□□ -0.22
PVT1-223	ENST00000615442	ZNF496	Q96IT1	587 aa	Predicted RBP	13.69	□□□□□ -0.22
PVT1-223	ENST00000615442	LRRC4B	Q9NT99	713 aa		13.69	□□□□□ -0.22
PVT1-223	ENST00000615442	LAS1L	Q9Y4W2	734 aa	Known RBP	13.69	□□□□□ -0.22
PVT1-223	ENST00000615442	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.68	□□□□□ -0.22
PVT1-223	ENST00000615442	RGPD4	Q7Z3J3	1758 aa		13.68	□□□□□ -0.22
PVT1-223	ENST00000615442	ZNF521	Q96K83	1311 aa		13.68	□□□□□ -0.22
PVT1-223	ENST00000615442	SLC4A9	Q96Q91	983 aa		13.68	□□□□□ -0.22
PVT1-223	ENST00000615442	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.68	□□□□□ -0.22
PVT1-223	ENST00000615442	EIF4A1	P60842	406 aa	Known RBP	13.67	□□□□□ -0.22
PVT1-223	ENST00000615442	NBPF14	Q5TI25	921 aa		13.67	□□□□□ -0.22
PVT1-223	ENST00000615442	MBIP	Q9NS73	344 aa		13.67	□□□□□ -0.22
PVT1-223	ENST00000615442	SIPA1L3	O60292	1781 aa	Predicted RBP	13.67	□□□□□ -0.22
PVT1-223	ENST00000615442	HEG1	Q9ULI3	1381 aa		13.67	□□□□□ -0.22
PVT1-223	ENST00000615442	EP400	Q96L91	3159 aa		13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	KCP	Q6ZWJ8	1503 aa		13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	PAPPA	Q13219	1627 aa		13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	SNRPA1	P09661	255 aa	Known RBP	13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	KCNQ4	P56696	695 aa		13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	GOLGA2	Q08379	1002 aa		13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	ITPK1	Q13572	414 aa		13.66	□□□□□ -0.22
PVT1-223	ENST00000615442	LY75	O60449	1722 aa		13.65	□□□□□ -0.22
PVT1-223	ENST00000615442	MYH16	Q9H6N6	1097 aa		13.65	□□□□□ -0.22
PVT1-223	ENST00000615442	ZNF831	Q5JPB2	1677 aa		13.64	□□□□□ -0.23
PVT1-223	ENST00000615442	GIGYF1	O75420	1035 aa	Predicted RBP	13.64	□□□□□ -0.23
PVT1-223	ENST00000615442	STARD3NL	O95772	234 aa		13.64	□□□□□ -0.23
PVT1-223	ENST00000615442	RC3H1	Q5TC82	1133 aa	Known RBP	13.64	□□□□□ -0.23
PVT1-223	ENST00000615442	DNAJC10	Q8IXB1	793 aa		13.64	□□□□□ -0.23
PVT1-223	ENST00000615442	LINC00116	Q8NCU8	138 aa		13.64	□□□□□ -0.23
PVT1-223	ENST00000615442	VIRMA	Q69YN4	1812 aa	Known RBP	13.63	□□□□□ -0.23
PVT1-223	ENST00000615442		E9PSI1	815 aa		13.63	□□□□□ -0.23
PVT1-223	ENST00000615442	CYP19A1	P11511	503 aa	Predicted RBP	13.63	□□□□□ -0.23
PVT1-223	ENST00000615442	AKT1S1	Q96B36	256 aa		13.63	□□□□□ -0.23
PVT1-223	ENST00000615442	STK32B	Q9NY57	414 aa		13.63	□□□□□ -0.23
PVT1-223	ENST00000615442	KAT6B	Q8WYB5	2073 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	HOXB7	P09629	217 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	SLC15A2	Q16348	729 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	USP16	Q9Y5T5	823 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	UBR2	Q8IWV8	1755 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	RREB1	Q92766	1687 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	SOS1	Q07889	1333 aa	Predicted RBP	13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	CNTNAP4	Q9C0A0	1308 aa		13.62	□□□□□ -0.23
PVT1-223	ENST00000615442	KDM3B	Q7LBC6	1761 aa		13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	SLFN5	Q08AF3	891 aa		13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	INTS5	Q6P9B9	1019 aa	Known RBP	13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	TSR2	Q969E8	191 aa	Known RBP	13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	AK7	Q96M32	723 aa		13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	CHMP4A	Q9BY43	222 aa		13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	ZBED9	Q6R2W3	1325 aa		13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	FANCI	Q9NVI1	1328 aa		13.61	□□□□□ -0.23
PVT1-223	ENST00000615442	PRAMEF22	A3QJZ6	481 aa		13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	CRKL	P46109	303 aa	Known RBP	13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	ZNF827	Q17R98	1081 aa		13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	DUSP27	Q5VZP5	1158 aa		13.6	□□□□□ -0.23
PVT1-223	ENST00000615442	TRMT2A	Q8IZ69	625 aa	Known RBP	13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms