RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 BRMS1Q9HCU9 246 aa12.36□□□□□ -0.43
VPS39-214ENST00000614932 SSFA2P28290 1259 aa12.36□□□□□ -0.43
VPS39-214ENST00000614932 EXOSC9Q06265 439 aaKnown RBP12.36□□□□□ -0.43
VPS39-214ENST00000614932 LRSAM1Q6UWE0 723 aa12.36□□□□□ -0.43
VPS39-214ENST00000614932 PPP6R1Q9UPN7 881 aa12.36□□□□□ -0.43
VPS39-214ENST00000614932 ARHGEF40Q8TER5 1519 aa12.35□□□□□ -0.43
VPS39-214ENST00000614932 POLKQ9UBT6 870 aa12.35□□□□□ -0.43
VPS39-214ENST00000614932 TNRQ92752 1358 aa12.35□□□□□ -0.43
VPS39-214ENST00000614932 PRKAR2BP31323 418 aa12.35□□□□□ -0.43
VPS39-214ENST00000614932 PLEKHF1Q96S99 279 aa12.35□□□□□ -0.43
VPS39-214ENST00000614932 NSD2O96028 1365 aa12.35□□□□□ -0.43
VPS39-214ENST00000614932 KIF13AQ9H1H9 1805 aa12.34□□□□□ -0.43
VPS39-214ENST00000614932 NCBP1Q09161 790 aaKnown RBP12.34□□□□□ -0.43
VPS39-214ENST00000614932 TRIM35Q9UPQ4 493 aa12.34□□□□□ -0.43
VPS39-214ENST00000614932 FAM43BQ6ZT52 329 aaPredicted RBP12.34□□□□□ -0.43
VPS39-214ENST00000614932 TICAM2Q86XR7 235 aa12.34□□□□□ -0.43
VPS39-214ENST00000614932 KIF18AQ8NI77 898 aa12.34□□□□□ -0.43
VPS39-214ENST00000614932 AGLP35573 1532 aa12.34□□□□□ -0.43
VPS39-214ENST00000614932 PPIP5K1Q6PFW1 1433 aa12.34□□□□□ -0.43
VPS39-214ENST00000614932 GUCY2CP25092 1073 aa12.33□□□□□ -0.43
VPS39-214ENST00000614932 SATB1Q01826 763 aa12.33□□□□□ -0.43
VPS39-214ENST00000614932 WDR63Q8IWG1 891 aa12.33□□□□□ -0.43
VPS39-214ENST00000614932 SPATA31D1Q6ZQQ2 1576 aa12.33□□□□□ -0.44
VPS39-214ENST00000614932 ELL2O00472 640 aaPredicted RBP12.33□□□□□ -0.44
VPS39-214ENST00000614932 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS39-214ENST00000614932 PHACTR3Q96KR7 559 aa12.33□□□□□ -0.44
VPS39-214ENST00000614932 PMFBP1Q8TBY8 1022 aa12.33□□□□□ -0.44
VPS39-214ENST00000614932 TMX1Q9H3N1 280 aa12.33□□□□□ -0.44
VPS39-214ENST00000614932 IQSEC2Q5JU85 1478 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 CYP2C19P33261 490 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 HSP90AB3PQ58FF7 597 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 PHF23Q9BUL5 403 aaPredicted RBP12.32□□□□□ -0.44
VPS39-214ENST00000614932 LMBRD1Q9NUN5 540 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 NBPF20Q3BBV1 942 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 MCTP1Q6DN14 999 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 RBM33Q96EV2 1170 aaKnown RBP12.32□□□□□ -0.44
VPS39-214ENST00000614932 PDZRN3Q9UPQ7 1066 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 PRR36Q9H6K5 1346 aa12.32□□□□□ -0.44
VPS39-214ENST00000614932 ROBO2Q9HCK4 1378 aa12.31□□□□□ -0.44
VPS39-214ENST00000614932 C17orf53Q8N3J3 647 aaPredicted RBP12.31□□□□□ -0.44
VPS39-214ENST00000614932 CCDC61Q9Y6R9 512 aa12.31□□□□□ -0.44
VPS39-214ENST00000614932 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.3□□□□□ -0.44
VPS39-214ENST00000614932 GOLGA6L6A8MZA4 724 aa12.3□□□□□ -0.44
VPS39-214ENST00000614932 PDE3AQ14432 1141 aa12.3□□□□□ -0.44
VPS39-214ENST00000614932 COG3Q96JB2 828 aa12.3□□□□□ -0.44
VPS39-214ENST00000614932 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
VPS39-214ENST00000614932 PCDHB15Q9Y5E8 787 aa12.3□□□□□ -0.44
VPS39-214ENST00000614932 USP32Q8NFA0 1604 aa12.3□□□□□ -0.44
VPS39-214ENST00000614932 REC8O95072 547 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 KCNA4P22459 653 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 CASQ1P31415 396 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 HDGFP51858 240 aaKnown RBP12.29□□□□□ -0.44
VPS39-214ENST00000614932 DCTN1Q14203 1278 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 GPATCH11Q8N954 259 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 FOXD4L1Q9NU39 408 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 TMEM2Q9UHN6 1383 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 RNF214Q8ND24 703 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 SSH1Q8WYL5 1049 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 FAM53CQ9NYF3 392 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 SYCE3A1L190 88 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 FAM83GA6ND36 823 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 CCDC27Q2M243 656 aa12.29□□□□□ -0.44
VPS39-214ENST00000614932 TTC12Q9H892 705 aaPredicted RBP12.29□□□□□ -0.44
VPS39-214ENST00000614932 RBM27Q9P2N5 1060 aaKnown RBP12.29□□□□□ -0.44
VPS39-214ENST00000614932 RAD50Q92878 1312 aa12.28□□□□□ -0.44
VPS39-214ENST00000614932 KIF16BQ96L93 1317 aa12.28□□□□□ -0.44
VPS39-214ENST00000614932 PLCD4Q9BRC7 762 aa12.28□□□□□ -0.44
VPS39-214ENST00000614932 DONSONQ9NYP3 566 aa12.28□□□□□ -0.44
VPS39-214ENST00000614932 CCDC9Q9Y3X0 531 aaKnown RBP12.28□□□□□ -0.44
VPS39-214ENST00000614932 REREQ9P2R6 1566 aa12.28□□□□□ -0.44
VPS39-214ENST00000614932 COL3A1P02461 1466 aaPredicted RBP12.28□□□□□ -0.44
VPS39-214ENST00000614932 NUTM2GQ5VZR2 741 aa12.28□□□□□ -0.44
VPS39-214ENST00000614932 NRXN3Q9Y4C0 1643 aa12.27□□□□□ -0.44
VPS39-214ENST00000614932 K7ELQ4 463 aaPredicted RBP12.27□□□□□ -0.45
VPS39-214ENST00000614932 ITPRIPQ8IWB1 547 aa12.27□□□□□ -0.45
VPS39-214ENST00000614932 NOL10Q9BSC4 688 aaKnown RBP12.27□□□□□ -0.45
VPS39-214ENST00000614932 NOB1Q9ULX3 412 aaKnown RBP12.27□□□□□ -0.45
VPS39-214ENST00000614932 AMOTL2Q9Y2J4 779 aa12.27□□□□□ -0.45
VPS39-214ENST00000614932 ACEP12821 1306 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 MUM1L1Q5H9M0 696 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 GPT2Q8TD30 523 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 TOMM22Q9NS69 142 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 CPS1P31327 1500 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 GOLIM4O00461 696 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 GYS2P54840 703 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 MPNDQ8N594 471 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 EID1Q9Y6B2 187 aa12.26□□□□□ -0.45
VPS39-214ENST00000614932 ZKSCAN2Q63HK3 967 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 TMEM63CQ9P1W3 806 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 IRF6O14896 467 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 KIF1CO43896 1103 aaKnown RBP12.25□□□□□ -0.45
VPS39-214ENST00000614932 TRIM27P14373 513 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 NUCB2P80303 420 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 C10orf67Q8IYJ2 551 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 TSPY26PQ9H489 355 aa12.25□□□□□ -0.45
VPS39-214ENST00000614932 MYO1CO00159 1063 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 FCHSD2O94868 740 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 IL13P35225 146 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 DZIP1LQ8IYY4 767 aaKnown RBP12.24□□□□□ -0.45
VPS39-214ENST00000614932 TSPYL6Q8N831 410 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms