RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ZNF316A6NFI3 1004 aaPredicted RBP7.66□□□□□ -1.18
CPNE3-208ENST00000614678 COL23A1Q86Y22 540 aaPredicted RBP7.66□□□□□ -1.18
CPNE3-208ENST00000614678 PRKRIP1Q9H875 184 aaPredicted RBP7.66□□□□□ -1.18
CPNE3-208ENST00000614678 TAF1LQ8IZX4 1826 aa7.66□□□□□ -1.18
CPNE3-208ENST00000614678 LOC102724428A0A0B4J2F2 783 aa7.66□□□□□ -1.18
CPNE3-208ENST00000614678 SIK1P57059 783 aa7.66□□□□□ -1.18
CPNE3-208ENST00000614678 RNMTO43148 476 aaKnown RBP7.66□□□□□ -1.18
CPNE3-208ENST00000614678 PTGER2P43116 358 aa7.66□□□□□ -1.18
CPNE3-208ENST00000614678 TFCP2L1Q9NZI6 479 aa7.66□□□□□ -1.18
CPNE3-208ENST00000614678 CASZ1Q86V15 1759 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 ATP6V1AP38606 617 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 CABP4P57796 275 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 NEUROD2Q15784 382 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 PCNTO95613 3336 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 MSH5O43196 834 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 C1orf141Q5JVX7 400 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 PLEKHF1Q96S99 279 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.65□□□□□ -1.18
CPNE3-208ENST00000614678 SCN11AQ9UI33 1791 aa7.65□□□□□ -1.18
CPNE3-208ENST00000614678 DCAF5Q96JK2 942 aa7.65□□□□□ -1.19
CPNE3-208ENST00000614678 NBPF14Q5TI25 921 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 C5P01031 1676 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 RGPD3A6NKT7 1758 aaPredicted RBP7.64□□□□□ -1.19
CPNE3-208ENST00000614678 RGPD4Q7Z3J3 1758 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 STK32BQ9NY57 414 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 ADAMTS8Q9UP79 889 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 DLG5Q8TDM6 1919 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 AKAP4Q5JQC9 854 aa7.64□□□□□ -1.19
CPNE3-208ENST00000614678 DNAJC10Q8IXB1 793 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 SLC52A2Q9HAB3 445 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 AMOTQ4VCS5 1084 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 KLHL34Q8N239 644 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 SGIP1Q9BQI5 828 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 C4BP0C0L5 1744 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 CEP350Q5VT06 3117 aa7.63□□□□□ -1.19
CPNE3-208ENST00000614678 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.62□□□□□ -1.19
CPNE3-208ENST00000614678 GNPATO15228 680 aa7.62□□□□□ -1.19
CPNE3-208ENST00000614678 ZNF428Q96B54 188 aa7.62□□□□□ -1.19
CPNE3-208ENST00000614678 ZNF496Q96IT1 587 aaPredicted RBP7.62□□□□□ -1.19
CPNE3-208ENST00000614678 SRP68Q9UHB9 627 aaKnown RBP7.62□□□□□ -1.19
CPNE3-208ENST00000614678 ZEB1P37275 1124 aaPredicted RBP7.62□□□□□ -1.19
CPNE3-208ENST00000614678 KRT24Q2M2I5 525 aa7.62□□□□□ -1.19
CPNE3-208ENST00000614678 CFAP53Q96M91 514 aa7.62□□□□□ -1.19
CPNE3-208ENST00000614678 PPP1R1BQ9UD71 204 aaPredicted RBP7.62□□□□□ -1.19
CPNE3-208ENST00000614678 UBR3Q6ZT12 1888 aa7.62□□□□□ -1.19
CPNE3-208ENST00000614678 ERVV-2B6SEH9 535 aa7.62□□□□□ -1.19
CPNE3-208ENST00000614678 MAP3K5Q99683 1374 aa7.61□□□□□ -1.19
CPNE3-208ENST00000614678 MYBBP1AQ9BQG0 1328 aaKnown RBP7.61□□□□□ -1.19
CPNE3-208ENST00000614678 GNAT3A8MTJ3 354 aa7.61□□□□□ -1.19
CPNE3-208ENST00000614678 SLC27A3Q5K4L6 730 aa7.61□□□□□ -1.19
CPNE3-208ENST00000614678 NLGN2Q8NFZ4 835 aa7.61□□□□□ -1.19
CPNE3-208ENST00000614678 FHDC1Q9C0D6 1143 aaPredicted RBP7.61□□□□□ -1.19
CPNE3-208ENST00000614678 SALL2Q9Y467 1007 aaPredicted RBP7.61□□□□□ -1.19
CPNE3-208ENST00000614678 KCPQ6ZWJ8 1503 aa7.61□□□□□ -1.19
CPNE3-208ENST00000614678 TJP1Q07157 1748 aa7.61□□□□□ -1.19
CPNE3-208ENST00000614678 FCHSD2O94868 740 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 CRKLP46109 303 aaKnown RBP7.6□□□□□ -1.19
CPNE3-208ENST00000614678 INTS5Q6P9B9 1019 aaKnown RBP7.6□□□□□ -1.19
CPNE3-208ENST00000614678 SPON1Q9HCB6 807 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 ZBTB1Q9Y2K1 713 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 USP16Q9Y5T5 823 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 ADAMTS7Q9UKP4 1686 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 RALBP1Q15311 655 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 A1BGP04217 495 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 ARHGEF1Q92888 912 aaKnown RBP7.6□□□□□ -1.19
CPNE3-208ENST00000614678 NUDCQ9Y266 331 aa7.6□□□□□ -1.19
CPNE3-208ENST00000614678 ZNF330Q9Y3S2 320 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-208ENST00000614678 SIPA1L3O60292 1781 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-208ENST00000614678 CEMIPQ8WUJ3 1361 aa7.59□□□□□ -1.19
CPNE3-208ENST00000614678 CCDC24Q8N4L8 307 aa7.59□□□□□ -1.19
CPNE3-208ENST00000614678 AK7Q96M32 723 aa7.59□□□□□ -1.19
CPNE3-208ENST00000614678 COL5A3P25940 1745 aaPredicted RBP7.59□□□□□ -1.19
CPNE3-208ENST00000614678 ZNF790Q6PG37 636 aa7.59□□□□□ -1.19
CPNE3-208ENST00000614678 CANXP27824 592 aaKnown RBP7.59□□□□□ -1.19
CPNE3-208ENST00000614678 MRC1P22897 1456 aa7.59□□□□□ -1.2
CPNE3-208ENST00000614678 BTBD11A6QL63 1104 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 NECTIN2Q92692 538 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 LRP5O75197 1615 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 ANXA1P04083 346 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 CYP19A1P11511 503 aaPredicted RBP7.58□□□□□ -1.2
CPNE3-208ENST00000614678 RIPK4P57078 832 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 TEFQ10587 303 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 SYT17Q9BSW7 474 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 MTFR1LQ9H019 292 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 TRIM35Q9UPQ4 493 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 APAF1O14727 1248 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 HSP90AB1P08238 724 aaKnown RBP7.58□□□□□ -1.2
CPNE3-208ENST00000614678 GAS2L2Q8NHY3 880 aa7.58□□□□□ -1.2
CPNE3-208ENST00000614678 SMARCC1Q92922 1105 aaPredicted RBP7.58□□□□□ -1.2
CPNE3-208ENST00000614678 FKBP8Q14318 412 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 TMPOP42166 694 aaKnown RBP7.57□□□□□ -1.2
CPNE3-208ENST00000614678 C4AP0C0L4 1744 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 UBR2Q8IWV8 1755 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 NGEFQ8N5V2 710 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 TBC1D2BQ9UPU7 963 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 LAS1LQ9Y4W2 734 aaKnown RBP7.57□□□□□ -1.2
CPNE3-208ENST00000614678 NFE2L2Q16236 605 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 ARXQ96QS3 562 aa7.57□□□□□ -1.2
CPNE3-208ENST00000614678 SLC51AQ86UW1 340 aa7.56□□□□□ -1.2
CPNE3-208ENST00000614678 NBPF26B4DH59 902 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms