RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 ERBB4Q15303 1308 aa27.32■■□□□ 1.96
POLR2J3-220ENST00000613744 PCDHB15Q9Y5E8 787 aa27.32■■□□□ 1.96
POLR2J3-220ENST00000613744 NWD2Q9ULI1 1742 aa27.31■■□□□ 1.96
POLR2J3-220ENST00000613744 PRKAR2BP31323 418 aa27.31■■□□□ 1.96
POLR2J3-220ENST00000613744 RARSP54136 660 aaKnown RBP27.31■■□□□ 1.96
POLR2J3-220ENST00000613744 WWC1Q8IX03 1113 aa27.31■■□□□ 1.96
POLR2J3-220ENST00000613744 CRB1P82279 1406 aa27.3■■□□□ 1.96
POLR2J3-220ENST00000613744 RUNDC1Q96C34 613 aa27.3■■□□□ 1.96
POLR2J3-220ENST00000613744 SNX21Q969T3 373 aa27.29■■□□□ 1.96
POLR2J3-220ENST00000613744 CARD10Q9BWT7 1032 aa27.29■■□□□ 1.96
POLR2J3-220ENST00000613744 GBP4Q96PP9 640 aa27.28■■□□□ 1.96
POLR2J3-220ENST00000613744 FCHSD2O94868 740 aa27.28■■□□□ 1.96
POLR2J3-220ENST00000613744 CCDC173Q0VFZ6 552 aa27.27■■□□□ 1.96
POLR2J3-220ENST00000613744 NEUROD2Q15784 382 aa27.27■■□□□ 1.96
POLR2J3-220ENST00000613744 NCBP3Q53F19 620 aaKnown RBP27.27■■□□□ 1.96
POLR2J3-220ENST00000613744 RRP7AQ9Y3A4 280 aaKnown RBP27.27■■□□□ 1.96
POLR2J3-220ENST00000613744 PHACTR3Q96KR7 559 aa27.26■■□□□ 1.95
POLR2J3-220ENST00000613744 FAM208AQ9UK61 1670 aaKnown RBP27.26■■□□□ 1.95
POLR2J3-220ENST00000613744 CALD1Q05682 793 aaKnown RBP27.26■■□□□ 1.95
POLR2J3-220ENST00000613744 SMC5Q8IY18 1101 aa27.25■■□□□ 1.95
POLR2J3-220ENST00000613744 TCP11L2Q8N4U5 519 aa27.25■■□□□ 1.95
POLR2J3-220ENST00000613744 PLEKHF1Q96S99 279 aa27.25■■□□□ 1.95
POLR2J3-220ENST00000613744 PPP1R9BQ96SB3 815 aa27.25■■□□□ 1.95
POLR2J3-220ENST00000613744 KDRP35968 1356 aa27.25■■□□□ 1.95
POLR2J3-220ENST00000613744 SPATA31A1Q5TZJ5 1347 aa27.25■■□□□ 1.95
POLR2J3-220ENST00000613744 SPATA31A5Q5VU36 1347 aa27.24■■□□□ 1.95
POLR2J3-220ENST00000613744 SPATA31A7Q8IWB4 1347 aa27.24■■□□□ 1.95
POLR2J3-220ENST00000613744 VPS72Q15906 364 aa27.24■■□□□ 1.95
POLR2J3-220ENST00000613744 WDR63Q8IWG1 891 aa27.24■■□□□ 1.95
POLR2J3-220ENST00000613744 MAP7D2Q96T17 732 aa27.24■■□□□ 1.95
POLR2J3-220ENST00000613744 QTRT2Q9H974 415 aaKnown RBP27.23■■□□□ 1.95
POLR2J3-220ENST00000613744 IBTKQ9P2D0 1353 aaPredicted RBP27.23■■□□□ 1.95
POLR2J3-220ENST00000613744 RAPGEF4Q8WZA2 1011 aa27.23■■□□□ 1.95
POLR2J3-220ENST00000613744 SPRYD3Q8NCJ5 442 aa27.22■■□□□ 1.95
POLR2J3-220ENST00000613744 PHF23Q9BUL5 403 aaPredicted RBP27.22■■□□□ 1.95
POLR2J3-220ENST00000613744 NCAPD2Q15021 1401 aa27.21■■□□□ 1.95
POLR2J3-220ENST00000613744 RBM25P49756 843 aaKnown RBP27.21■■□□□ 1.95
POLR2J3-220ENST00000613744 MEGF6O75095 1541 aa27.21■■□□□ 1.95
POLR2J3-220ENST00000613744 OFD1O75665 1012 aa27.2■■□□□ 1.94
POLR2J3-220ENST00000613744 FAM98CQ17RN3 349 aaKnown RBP27.2■■□□□ 1.94
POLR2J3-220ENST00000613744 PDZRN4Q6ZMN7 1036 aaPredicted RBP27.2■■□□□ 1.94
POLR2J3-220ENST00000613744 TRPC5Q9UL62 973 aaPredicted RBP27.2■■□□□ 1.94
POLR2J3-220ENST00000613744 ZSCAN30Q86W11 494 aa27.19■■□□□ 1.94
POLR2J3-220ENST00000613744 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.19■■□□□ 1.94
POLR2J3-220ENST00000613744 IL2RBP14784 551 aa27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 TATP17735 454 aaPredicted RBP27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 MVPQ14764 893 aaKnown RBP27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 RAB3GAP1Q15042 981 aa27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 CCDC27Q2M243 656 aa27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 RLBP1P12271 317 aa27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 MFAP1P55081 439 aaKnown RBP27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 HDAC1Q13547 482 aaPredicted RBP27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 GJD4Q96KN9 370 aaPredicted RBP27.18■■□□□ 1.94
POLR2J3-220ENST00000613744 KIAA1211Q6ZU35 1233 aa27.17■■□□□ 1.94
POLR2J3-220ENST00000613744 RGS17Q9UGC6 210 aaPredicted RBP27.17■■□□□ 1.94
POLR2J3-220ENST00000613744 MTHFSDQ2M296 383 aaKnown RBP27.17■■□□□ 1.94
POLR2J3-220ENST00000613744 TNPO1Q92973 898 aaKnown RBP27.17■■□□□ 1.94
POLR2J3-220ENST00000613744 ATRNO75882 1429 aa27.16■■□□□ 1.94
POLR2J3-220ENST00000613744 HS1BP3Q53T59 392 aa27.16■■□□□ 1.94
POLR2J3-220ENST00000613744 A0A0G2JS52 829 aa27.15■■□□□ 1.94
POLR2J3-220ENST00000613744 CT47B1P0C2W7 299 aaPredicted RBP27.15■■□□□ 1.94
POLR2J3-220ENST00000613744 ZNF772Q68DY9 489 aaPredicted RBP27.15■■□□□ 1.94
POLR2J3-220ENST00000613744 GAS2L3Q86XJ1 694 aa27.15■■□□□ 1.94
POLR2J3-220ENST00000613744 ANP32BQ92688 251 aaKnown RBP27.15■■□□□ 1.94
POLR2J3-220ENST00000613744 TMPOP42166 694 aaKnown RBP27.13■■□□□ 1.93
POLR2J3-220ENST00000613744 THRAP3Q9Y2W1 955 aaKnown RBP27.13■■□□□ 1.93
POLR2J3-220ENST00000613744 GLI3P10071 1580 aa27.12■■□□□ 1.93
POLR2J3-220ENST00000613744 CLEC17AQ6ZS10 378 aa27.12■■□□□ 1.93
POLR2J3-220ENST00000613744 RIPK4P57078 832 aa27.11■■□□□ 1.93
POLR2J3-220ENST00000613744 PLEKHO1Q53GL0 409 aaPredicted RBP27.11■■□□□ 1.93
POLR2J3-220ENST00000613744 OVOS2A0A0G2JMS6 1433 aa27.1■■□□□ 1.93
POLR2J3-220ENST00000613744 DISP2A7MBM2 1401 aa27.1■■□□□ 1.93
POLR2J3-220ENST00000613744 ZKSCAN2Q63HK3 967 aa27.1■■□□□ 1.93
POLR2J3-220ENST00000613744 BARGINQ6ZT62 677 aa27.1■■□□□ 1.93
POLR2J3-220ENST00000613744 ZNF530Q6P9A1 599 aaPredicted RBP27.09■■□□□ 1.93
POLR2J3-220ENST00000613744 ZCRB1Q8TBF4 217 aaKnown RBP27.09■■□□□ 1.93
POLR2J3-220ENST00000613744 DDX54Q8TDD1 881 aaKnown RBP27.09■■□□□ 1.93
POLR2J3-220ENST00000613744 NFE2L2Q16236 605 aa27.09■■□□□ 1.93
POLR2J3-220ENST00000613744 POTEAQ6S8J7 498 aa27.09■■□□□ 1.93
POLR2J3-220ENST00000613744 MTERF4Q7Z6M4 381 aaKnown RBP27.08■■□□□ 1.93
POLR2J3-220ENST00000613744 PARP4Q9UKK3 1724 aaKnown RBP27.08■■□□□ 1.93
POLR2J3-220ENST00000613744 GOLGA6L22H0YM25 854 aa27.07■■□□□ 1.92
POLR2J3-220ENST00000613744 MSNP26038 577 aaKnown RBP27.07■■□□□ 1.92
POLR2J3-220ENST00000613744 NASPP49321 788 aaPredicted RBP27.07■■□□□ 1.92
POLR2J3-220ENST00000613744 AMOTQ4VCS5 1084 aa27.07■■□□□ 1.92
POLR2J3-220ENST00000613744 SPG7Q9UQ90 795 aa27.07■■□□□ 1.92
POLR2J3-220ENST00000613744 DZIP1LQ8IYY4 767 aaKnown RBP27.07■■□□□ 1.92
POLR2J3-220ENST00000613744 WNK3Q9BYP7 1800 aa27.06■■□□□ 1.92
POLR2J3-220ENST00000613744 HSP90AB1P08238 724 aaKnown RBP27.06■■□□□ 1.92
POLR2J3-220ENST00000613744 GAS2L2Q8NHY3 880 aa27.06■■□□□ 1.92
POLR2J3-220ENST00000613744 EXOC5O00471 708 aa27.05■■□□□ 1.92
POLR2J3-220ENST00000613744 DCTN1Q14203 1278 aa27.05■■□□□ 1.92
POLR2J3-220ENST00000613744 DDB1Q16531 1140 aa27.05■■□□□ 1.92
POLR2J3-220ENST00000613744 CYP27B1O15528 508 aa27.04■■□□□ 1.92
POLR2J3-220ENST00000613744 KLHL40Q2TBA0 621 aa27.04■■□□□ 1.92
POLR2J3-220ENST00000613744 TRIM35Q9UPQ4 493 aa27.04■■□□□ 1.92
POLR2J3-220ENST00000613744 TNNQ9UQP3 1299 aa27.04■■□□□ 1.92
POLR2J3-220ENST00000613744 RBM6P78332 1123 aaKnown RBP27.03■■□□□ 1.92
POLR2J3-220ENST00000613744 C1orf141Q5JVX7 400 aa27.03■■□□□ 1.92
POLR2J3-220ENST00000613744 THUMPD2Q9BTF0 503 aaKnown RBP27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms