RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 RSPH14Q9UHP6 348 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 PRDM2Q13029 1718 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 XRCC6P12956 609 aaKnown RBP eCLIP10.17□□□□□ -0.78
TTC28-208ENST00000612946 STIM2Q9P246 746 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 YEATS4O95619 227 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 KANK4Q5T7N3 995 aaPredicted RBP10.17□□□□□ -0.78
TTC28-208ENST00000612946 NBPF8Q3BBV2 869 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 GPRASP1Q5JY77 1395 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 WHAMMP3Q1A5X7 153 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.16□□□□□ -0.78
TTC28-208ENST00000612946 SLC8A1P32418 973 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 IFI16Q16666 785 aaKnown RBP10.16□□□□□ -0.78
TTC28-208ENST00000612946 ZMYM3Q14202 1370 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 BUB1BO60566 1050 aaPredicted RBP10.16□□□□□ -0.78
TTC28-208ENST00000612946 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.16□□□□□ -0.78
TTC28-208ENST00000612946 ZNF365Q70YC5 407 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.16□□□□□ -0.782e-9■■■■■ 223.6
TTC28-208ENST00000612946 ELP1O95163 1332 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 CCT4P50991 539 aaKnown RBP10.16□□□□□ -0.78
TTC28-208ENST00000612946 VPS53Q5VIR6 699 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 LRRC9Q6ZRR7 1453 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 URI1O94763 535 aaPredicted RBP10.16□□□□□ -0.78
TTC28-208ENST00000612946 GBP1P32455 592 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 CACNA2D3Q8IZS8 1091 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 MICALL1Q8N3F8 863 aa10.16□□□□□ -0.78
TTC28-208ENST00000612946 FAM76AQ8TAV0 307 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 SREK1Q8WXA9 508 aaKnown RBP10.15□□□□□ -0.78
TTC28-208ENST00000612946 NAA25Q14CX7 972 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 ZSCAN23Q3MJ62 389 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 PSMD1Q99460 953 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CLNS1AP54105 237 aaKnown RBP10.15□□□□□ -0.78
TTC28-208ENST00000612946 FAM200AQ8TCP9 573 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CEP128Q6ZU80 1094 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CROCCP2Q86T23 111 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 SNX21Q969T3 373 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CTAGE1Q96RT6 745 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CHD1LQ86WJ1 897 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 SPATS2LQ9NUQ6 558 aaKnown RBP10.15□□□□□ -0.78
TTC28-208ENST00000612946 APAF1O14727 1248 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 ATP11AP98196 1134 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CCDC6Q16204 474 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 PANK1Q8TE04 598 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 CDK5RAP3Q96JB5 506 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 TBC1D32Q96NH3 1257 aa10.15□□□□□ -0.78
TTC28-208ENST00000612946 C10orf67Q8IYJ2 551 aa10.15□□□□□ -0.79
TTC28-208ENST00000612946 CTAGE9A4FU28 777 aa10.15□□□□□ -0.79
TTC28-208ENST00000612946 SLC3A2P08195 630 aaKnown RBP10.15□□□□□ -0.79
TTC28-208ENST00000612946 CCDC196A0A1B0GTZ2 297 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 LRPPRCP42704 1394 aaKnown RBP10.14□□□□□ -0.79
TTC28-208ENST00000612946 RPGRIP1LQ68CZ1 1315 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 CCDC174Q6PII3 467 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 ERCC3P19447 782 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 MAP7Q14244 749 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 FBXW7Q969H0 707 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 NAP1L3Q99457 506 aaPredicted RBP10.14□□□□□ -0.79
TTC28-208ENST00000612946 CCDC27Q2M243 656 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 FKBP15Q5T1M5 1219 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 CCDC155Q8N6L0 562 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 VGFO15240 615 aaPredicted RBP10.14□□□□□ -0.79
TTC28-208ENST00000612946 ABCC11Q96J66 1382 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 SKIDA1Q1XH10 827 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 CCDC40Q4G0X9 1142 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 KANK3Q6NY19 840 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 CEP57Q86XR8 500 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 CCDC110Q8TBZ0 833 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 MAP3K9P80192 1104 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 HECW1Q76N89 1606 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 RASAL2Q9UJF2 1139 aa10.14□□□□□ -0.79
TTC28-208ENST00000612946 CTAGE15A4D2H0 777 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 SPDYE4A6NLX3 237 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 CTAGE8P0CG41 777 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 NLRP5P59047 1200 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 CTAGE6Q86UF2 777 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 CTAGE4Q8IX94 777 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 SMARCA4P51532 1647 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 HFM1A2PYH4 1435 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 CCDC114Q96M63 670 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 TIAM1Q13009 1591 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 POTEJP0CG39 1038 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 PRPHP41219 470 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 PPFIBP2Q8ND30 876 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 UBTFL1P0CB47 393 aaPredicted RBP10.13□□□□□ -0.79
TTC28-208ENST00000612946 TBC1D2Q9BYX2 928 aa10.13□□□□□ -0.79
TTC28-208ENST00000612946 MYO1BO43795 1136 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 PLVAPQ9BX97 442 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 CTNNA3Q9UI47 895 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 FSD2A1L4K1 749 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 INPP5BP32019 993 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 SAMD15Q9P1V8 674 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 CCDC141Q6ZP82 1450 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 BAG4O95429 457 aaKnown RBP10.12□□□□□ -0.79
TTC28-208ENST00000612946 CCDC129Q6ZRS4 1044 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 PNISRQ8TF01 805 aaKnown RBP10.12□□□□□ -0.79
TTC28-208ENST00000612946 ZMAT2Q96NC0 199 aaKnown RBP10.12□□□□□ -0.79
TTC28-208ENST00000612946 HYPKQ9NX55 129 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 DIAPH1O60610 1272 aaKnown RBP10.12□□□□□ -0.79
TTC28-208ENST00000612946 KIF4AO95239 1232 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 PAXIP1Q6ZW49 1069 aaPredicted RBP10.12□□□□□ -0.79
TTC28-208ENST00000612946 GNAI2P04899 355 aa10.12□□□□□ -0.79
TTC28-208ENST00000612946 CCDC172P0C7W6 258 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms