RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 TNRC18O15417 2968 aaPredicted RBP7.15□□□□□ -1.26
VRK3-226ENST00000602029 LOC102724428A0A0B4J2F2 783 aa7.15□□□□□ -1.26
VRK3-226ENST00000602029 SIK1P57059 783 aa7.15□□□□□ -1.26
VRK3-226ENST00000602029 FAM161AQ3B820 660 aa7.15□□□□□ -1.26
VRK3-226ENST00000602029 ARHGAP27Q6ZUM4 889 aa7.15□□□□□ -1.26
VRK3-226ENST00000602029 TESK2Q96S53 571 aa7.15□□□□□ -1.26
VRK3-226ENST00000602029 INSRP06213 1382 aa7.15□□□□□ -1.26
VRK3-226ENST00000602029 USP54Q70EL1 1684 aa7.15□□□□□ -1.27
VRK3-226ENST00000602029 BRCA1P38398 1863 aaKnown RBP7.15□□□□□ -1.27
VRK3-226ENST00000602029 PDE4DIPQ5VU43 2346 aa7.15□□□□□ -1.27
VRK3-226ENST00000602029 CYP27B1O15528 508 aa7.14□□□□□ -1.27
VRK3-226ENST00000602029 SBF1O95248 1867 aa7.14□□□□□ -1.27
VRK3-226ENST00000602029 MMP10P09238 476 aa7.14□□□□□ -1.27
VRK3-226ENST00000602029 SSFA2P28290 1259 aa7.14□□□□□ -1.27
VRK3-226ENST00000602029 PIGBQ92521 554 aa7.14□□□□□ -1.27
VRK3-226ENST00000602029 RTCBQ9Y3I0 505 aaKnown RBP7.14□□□□□ -1.27
VRK3-226ENST00000602029 TOGARAM1Q9Y4F4 1720 aa7.14□□□□□ -1.27
VRK3-226ENST00000602029 FCHSD2O94868 740 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 RFC4P35249 363 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 TRAPPC3LQ5T215 181 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 IFNL2Q8IZJ0 200 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 LINC00116Q8NCU8 138 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 ASAP1Q9ULH1 1129 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 PARP3Q9Y6F1 533 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 KIF13BQ9NQT8 1826 aa7.13□□□□□ -1.27
VRK3-226ENST00000602029 C5P01031 1676 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 CLSPNQ9HAW4 1339 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 CABP4P57796 275 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 C1orf141Q5JVX7 400 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 CCDC87Q9NVE4 849 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 RGPD2P0DJD1 1756 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 C4BP0C0L5 1744 aa7.12□□□□□ -1.27
VRK3-226ENST00000602029 CCDC88AQ3V6T2 1871 aa7.11□□□□□ -1.27
VRK3-226ENST00000602029 A0A0G2JLW4 131 aa7.11□□□□□ -1.27
VRK3-226ENST00000602029 PTCD1O75127 700 aaKnown RBP7.11□□□□□ -1.27
VRK3-226ENST00000602029 ITPK1Q13572 414 aa7.11□□□□□ -1.27
VRK3-226ENST00000602029 ZNF530Q6P9A1 599 aaPredicted RBP7.11□□□□□ -1.27
VRK3-226ENST00000602029 AMIGO3Q86WK7 504 aa7.11□□□□□ -1.27
VRK3-226ENST00000602029 RBM46Q8TBY0 533 aaKnown RBP7.11□□□□□ -1.27
VRK3-226ENST00000602029 EYA1Q99502 592 aa7.11□□□□□ -1.27
VRK3-226ENST00000602029 UBR3Q6ZT12 1888 aa7.11□□□□□ -1.27
VRK3-226ENST00000602029 KIF24Q5T7B8 1368 aa7.1□□□□□ -1.27
VRK3-226ENST00000602029 TNRC6CQ9HCJ0 1690 aaKnown RBP7.1□□□□□ -1.27
VRK3-226ENST00000602029 HSP90AB1P08238 724 aaKnown RBP7.1□□□□□ -1.27
VRK3-226ENST00000602029 PHKG2P15735 406 aa7.1□□□□□ -1.27
VRK3-226ENST00000602029 PLEKHO1Q53GL0 409 aaPredicted RBP7.1□□□□□ -1.27
VRK3-226ENST00000602029 NLGN1Q8N2Q7 840 aa7.1□□□□□ -1.27
VRK3-226ENST00000602029 KCPQ6ZWJ8 1503 aa7.1□□□□□ -1.27
VRK3-226ENST00000602029 ARFGEF1Q9Y6D6 1849 aa7.1□□□□□ -1.27
VRK3-226ENST00000602029 VIRMAQ69YN4 1812 aaKnown RBP7.09□□□□□ -1.27
VRK3-226ENST00000602029 DPEP1P16444 411 aa7.09□□□□□ -1.27
VRK3-226ENST00000602029 MTHFSP49914 203 aa7.09□□□□□ -1.27
VRK3-226ENST00000602029 CNGB1Q14028 1251 aaPredicted RBP7.09□□□□□ -1.27
VRK3-226ENST00000602029 CARD14Q9BXL6 1004 aa7.09□□□□□ -1.27
VRK3-226ENST00000602029 ATG3Q9NT62 314 aa7.09□□□□□ -1.27
VRK3-226ENST00000602029 RNF181Q9P0P0 153 aa7.09□□□□□ -1.27
VRK3-226ENST00000602029 KIF20BQ96Q89 1820 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 WASHC2AQ641Q2 1341 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 KDM2BQ8NHM5 1336 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 NPHP1O15259 732 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 ZPR1O75312 459 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 TGFB2P61812 414 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 EIF4A2Q14240 407 aaKnown RBP7.08□□□□□ -1.28
VRK3-226ENST00000602029 NKX1-1Q15270 411 aaPredicted RBP7.08□□□□□ -1.28
VRK3-226ENST00000602029 DALRD3Q5D0E6 543 aaKnown RBP7.08□□□□□ -1.28
VRK3-226ENST00000602029 C9orf131Q5VYM1 1079 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 MORC1Q86VD1 984 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 ARHGEF1Q92888 912 aaKnown RBP7.08□□□□□ -1.28
VRK3-226ENST00000602029 DCAF5Q96JK2 942 aa7.08□□□□□ -1.28
VRK3-226ENST00000602029 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.08□□□□□ -1.28
VRK3-226ENST00000602029 PXDNLA1KZ92 1463 aa7.07□□□□□ -1.28
VRK3-226ENST00000602029 ERVV-2B6SEH9 535 aa7.07□□□□□ -1.28
VRK3-226ENST00000602029 FOXN1O15353 648 aa7.07□□□□□ -1.28
VRK3-226ENST00000602029 FSTL1Q12841 308 aa7.07□□□□□ -1.28
VRK3-226ENST00000602029 PIM2Q9P1W9 311 aa7.07□□□□□ -1.28
VRK3-226ENST00000602029 POLKQ9UBT6 870 aa7.07□□□□□ -1.28
VRK3-226ENST00000602029 SRP68Q9UHB9 627 aaKnown RBP7.07□□□□□ -1.28
VRK3-226ENST00000602029 ZNF330Q9Y3S2 320 aaPredicted RBP7.07□□□□□ -1.28
VRK3-226ENST00000602029 RPS6KA4O75676 772 aa7.06□□□□□ -1.28
VRK3-226ENST00000602029 CHRNA5P30532 468 aa7.06□□□□□ -1.28
VRK3-226ENST00000602029 CRKLP46109 303 aaKnown RBP7.06□□□□□ -1.28
VRK3-226ENST00000602029 AMOTQ4VCS5 1084 aa7.06□□□□□ -1.28
VRK3-226ENST00000602029 NPM2Q86SE8 214 aaKnown RBP7.06□□□□□ -1.28
VRK3-226ENST00000602029 CCER1Q8TC90 406 aaPredicted RBP7.06□□□□□ -1.28
VRK3-226ENST00000602029 CNTNAP4Q9C0A0 1308 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 GYS1P13807 737 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 KCNA4P22459 653 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 SULT6B1Q6IMI4 303 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 BICDL1Q6ZP65 573 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 NFATC2IPQ8NCF5 419 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 PANK3Q9H999 370 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 RRAGCQ9HB90 399 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 KNSTRNQ9Y448 316 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 PLEKHG2Q9H7P9 1386 aa7.05□□□□□ -1.28
VRK3-226ENST00000602029 ITGB4P16144 1822 aa7.04□□□□□ -1.28
VRK3-226ENST00000602029 C10orf71Q711Q0 1435 aa7.04□□□□□ -1.28
VRK3-226ENST00000602029 EIF4G2P78344 907 aaKnown RBP eCLIP7.04□□□□□ -1.28
VRK3-226ENST00000602029 FKBP8Q14318 412 aa7.04□□□□□ -1.28
VRK3-226ENST00000602029 RC3H1Q5TC82 1133 aaKnown RBP7.04□□□□□ -1.28
VRK3-226ENST00000602029 AEBP1Q8IUX7 1158 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms