RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 FLAD1Q8NFF5 587 aa18.94■□□□□ 0.62
LIG1-218ENST00000599322 PPP2R1AP30153 589 aa18.93■□□□□ 0.62
LIG1-218ENST00000599322 NEFMP07197 916 aa18.92■□□□□ 0.62
LIG1-218ENST00000599322 AK7Q96M32 723 aa18.92■□□□□ 0.62
LIG1-218ENST00000599322 LOC102724428A0A0B4J2F2 783 aa18.91■□□□□ 0.62
LIG1-218ENST00000599322 POLD1P28340 1107 aa18.91■□□□□ 0.62
LIG1-218ENST00000599322 SIK1P57059 783 aa18.91■□□□□ 0.62
LIG1-218ENST00000599322 ATP6V1AP38606 617 aa18.9■□□□□ 0.62
LIG1-218ENST00000599322 GAS2L2Q8NHY3 880 aa18.9■□□□□ 0.62
LIG1-218ENST00000599322 ASAP1Q9ULH1 1129 aa18.9■□□□□ 0.62
LIG1-218ENST00000599322 U2AF1L5P0DN76 240 aaPredicted RBP18.89■□□□□ 0.61
LIG1-218ENST00000599322 U2AF1Q01081 240 aaKnown RBP eCLIP18.89■□□□□ 0.61
LIG1-218ENST00000599322 DDX10Q13206 875 aaKnown RBP18.89■□□□□ 0.61
LIG1-218ENST00000599322 ZNF784Q8NCA9 323 aaPredicted RBP18.89■□□□□ 0.61
LIG1-218ENST00000599322 RBM42Q9BTD8 480 aaKnown RBP18.89■□□□□ 0.61
LIG1-218ENST00000599322 ATG3Q9NT62 314 aa18.89■□□□□ 0.61
LIG1-218ENST00000599322 UBR3Q6ZT12 1888 aa18.88■□□□□ 0.61
LIG1-218ENST00000599322 GOLGB1Q14789 3259 aaKnown RBP18.87■□□□□ 0.61
LIG1-218ENST00000599322 NFATC2IPQ8NCF5 419 aa18.87■□□□□ 0.61
LIG1-218ENST00000599322 RALBP1Q15311 655 aa18.86■□□□□ 0.61
LIG1-218ENST00000599322 MTHFSDQ2M296 383 aaKnown RBP18.86■□□□□ 0.61
LIG1-218ENST00000599322 KLHL34Q8N239 644 aa18.86■□□□□ 0.61
LIG1-218ENST00000599322 C4BP0C0L5 1744 aa18.86■□□□□ 0.61
LIG1-218ENST00000599322 COL23A1Q86Y22 540 aaPredicted RBP18.85■□□□□ 0.61
LIG1-218ENST00000599322 PNNQ9H307 717 aaKnown RBP18.85■□□□□ 0.61
LIG1-218ENST00000599322 RNMTO43148 476 aaKnown RBP18.84■□□□□ 0.61
LIG1-218ENST00000599322 SLC52A2Q9HAB3 445 aa18.84■□□□□ 0.61
LIG1-218ENST00000599322 KDM6AO15550 1401 aaPredicted RBP18.83■□□□□ 0.61
LIG1-218ENST00000599322 GNAT3A8MTJ3 354 aa18.83■□□□□ 0.6
LIG1-218ENST00000599322 FCHSD2O94868 740 aa18.83■□□□□ 0.6
LIG1-218ENST00000599322 PRKAR2BP31323 418 aa18.83■□□□□ 0.6
LIG1-218ENST00000599322 TEFQ10587 303 aa18.83■□□□□ 0.6
LIG1-218ENST00000599322 NLGN2Q8NFZ4 835 aa18.83■□□□□ 0.6
LIG1-218ENST00000599322 COL3A1P02461 1466 aaPredicted RBP18.83■□□□□ 0.6
LIG1-218ENST00000599322 PTCD1O75127 700 aaKnown RBP18.82■□□□□ 0.6
LIG1-218ENST00000599322 GPR162Q16538 588 aa18.82■□□□□ 0.6
LIG1-218ENST00000599322 RTF1Q92541 710 aaKnown RBP18.82■□□□□ 0.6
LIG1-218ENST00000599322 GNPATO15228 680 aa18.81■□□□□ 0.6
LIG1-218ENST00000599322 PHF14O94880 888 aa18.81■□□□□ 0.6
LIG1-218ENST00000599322 SSFA2P28290 1259 aa18.81■□□□□ 0.6
LIG1-218ENST00000599322 LGR6Q9HBX8 967 aa18.81■□□□□ 0.6
LIG1-218ENST00000599322 RTCBQ9Y3I0 505 aaKnown RBP18.81■□□□□ 0.6
LIG1-218ENST00000599322 TTC5Q8N0Z6 440 aa18.8■□□□□ 0.6
LIG1-218ENST00000599322 LINC00116Q8NCU8 138 aa18.8■□□□□ 0.6
LIG1-218ENST00000599322 RSPH6AQ9H0K4 717 aa18.8■□□□□ 0.6
LIG1-218ENST00000599322 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.79■□□□□ 0.6
LIG1-218ENST00000599322 ITPK1Q13572 414 aa18.79■□□□□ 0.6
LIG1-218ENST00000599322 MSL1Q68DK7 614 aa18.79■□□□□ 0.6
LIG1-218ENST00000599322 TRAPPC3LQ5T215 181 aa18.78■□□□□ 0.6
LIG1-218ENST00000599322 RC3H1Q5TC82 1133 aaKnown RBP18.78■□□□□ 0.6
LIG1-218ENST00000599322 AMIGO3Q86WK7 504 aa18.77■□□□□ 0.6
LIG1-218ENST00000599322 PELP1Q8IZL8 1130 aaKnown RBP18.77■□□□□ 0.6
LIG1-218ENST00000599322 ADRA2BP18089 450 aa18.76■□□□□ 0.59
LIG1-218ENST00000599322 MAPK8IP3Q9UPT6 1336 aa18.75■□□□□ 0.59
LIG1-218ENST00000599322 YBX3P16989 372 aaKnown RBP eCLIP18.75■□□□□ 0.59
LIG1-218ENST00000599322 PHACTR3Q96KR7 559 aa18.75■□□□□ 0.59
LIG1-218ENST00000599322 SCN11AQ9UI33 1791 aa18.75■□□□□ 0.59
LIG1-218ENST00000599322 MYBBP1AQ9BQG0 1328 aaKnown RBP18.74■□□□□ 0.59
LIG1-218ENST00000599322 CNTNAP4Q9C0A0 1308 aa18.74■□□□□ 0.59
LIG1-218ENST00000599322 RFC4P35249 363 aa18.74■□□□□ 0.59
LIG1-218ENST00000599322 HTATSF1O43719 755 aaKnown RBP18.73■□□□□ 0.59
LIG1-218ENST00000599322 RPS6KA4O75676 772 aa18.73■□□□□ 0.59
LIG1-218ENST00000599322 SLC39A6Q13433 755 aa18.73■□□□□ 0.59
LIG1-218ENST00000599322 SMIM5Q71RC9 77 aa18.73■□□□□ 0.59
LIG1-218ENST00000599322 VSIG10Q8N0Z9 540 aa18.72■□□□□ 0.59
LIG1-218ENST00000599322 IL17REQ8NFR9 667 aa18.72■□□□□ 0.59
LIG1-218ENST00000599322 SLC4A9Q96Q91 983 aa18.72■□□□□ 0.59
LIG1-218ENST00000599322 TEX13AQ9BXU3 409 aaPredicted RBP18.72■□□□□ 0.59
LIG1-218ENST00000599322 COL5A3P25940 1745 aaPredicted RBP18.71■□□□□ 0.59
LIG1-218ENST00000599322 ZNF831Q5JPB2 1677 aa18.71■□□□□ 0.59
LIG1-218ENST00000599322 BTBD11A6QL63 1104 aa18.71■□□□□ 0.59
LIG1-218ENST00000599322 STARD3NLO95772 234 aa18.71■□□□□ 0.59
LIG1-218ENST00000599322 CRKLP46109 303 aaKnown RBP18.71■□□□□ 0.59
LIG1-218ENST00000599322 NPM2Q86SE8 214 aaKnown RBP18.71■□□□□ 0.59
LIG1-218ENST00000599322 NLGN1Q8N2Q7 840 aa18.71■□□□□ 0.59
LIG1-218ENST00000599322 WDR43Q15061 677 aaKnown RBP eCLIP18.7■□□□□ 0.58
LIG1-218ENST00000599322 MRC1P22897 1456 aa18.7■□□□□ 0.58
LIG1-218ENST00000599322 C1QTNF8P60827 252 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 ZNF790Q6PG37 636 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 DNAJC10Q8IXB1 793 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 FMNL2Q96PY5 1086 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 CCDC87Q9NVE4 849 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 CD2APQ9Y5K6 639 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 KIF13BQ9NQT8 1826 aa18.69■□□□□ 0.58
LIG1-218ENST00000599322 VIRMAQ69YN4 1812 aaKnown RBP18.68■□□□□ 0.58
LIG1-218ENST00000599322 ARHGEF1Q92888 912 aaKnown RBP18.68■□□□□ 0.58
LIG1-218ENST00000599322 KIAA1551Q9HCM1 1747 aa18.68■□□□□ 0.58
LIG1-218ENST00000599322 GRIN3BO60391 1043 aa18.67■□□□□ 0.58
LIG1-218ENST00000599322 ZPR1O75312 459 aa18.67■□□□□ 0.58
LIG1-218ENST00000599322 MYH14Q7Z406 1995 aaKnown RBP18.67■□□□□ 0.58
LIG1-218ENST00000599322 ZNF316A6NFI3 1004 aaPredicted RBP18.66■□□□□ 0.58
LIG1-218ENST00000599322 MCM10Q7L590 875 aa18.66■□□□□ 0.58
LIG1-218ENST00000599322 PNISRQ8TF01 805 aaKnown RBP18.66■□□□□ 0.58
LIG1-218ENST00000599322 N4BP2Q86UW6 1770 aaPredicted RBP18.65■□□□□ 0.58
LIG1-218ENST00000599322 CYP19A1P11511 503 aaPredicted RBP18.65■□□□□ 0.58
LIG1-218ENST00000599322 TAF7Q15545 349 aaPredicted RBP18.65■□□□□ 0.58
LIG1-218ENST00000599322 NFE2L2Q16236 605 aa18.65■□□□□ 0.58
LIG1-218ENST00000599322 C4AP0C0L4 1744 aa18.65■□□□□ 0.58
LIG1-218ENST00000599322 CEMIPQ8WUJ3 1361 aa18.65■□□□□ 0.58
LIG1-218ENST00000599322 SENP3-EIF4A1A0A087X0R7 540 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms