RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 SMIM5Q71RC9 77 aa21.84■■□□□ 1.09
USHBP1-206ENST00000596436 ASAP1Q9ULH1 1129 aa21.84■■□□□ 1.09
USHBP1-206ENST00000596436 KDRP35968 1356 aa21.84■■□□□ 1.09
USHBP1-206ENST00000596436 EIF4A2Q14240 407 aaKnown RBP21.83■■□□□ 1.09
USHBP1-206ENST00000596436 CICQ96RK0 1608 aaPredicted RBP21.83■■□□□ 1.08
USHBP1-206ENST00000596436 KIF13BQ9NQT8 1826 aa21.83■■□□□ 1.08
USHBP1-206ENST00000596436 IGSF1Q8N6C5 1336 aa21.82■■□□□ 1.08
USHBP1-206ENST00000596436 PHF14O94880 888 aa21.82■■□□□ 1.08
USHBP1-206ENST00000596436 ATG3Q9NT62 314 aa21.82■■□□□ 1.08
USHBP1-206ENST00000596436 KIAA1551Q9HCM1 1747 aa21.82■■□□□ 1.08
USHBP1-206ENST00000596436 COL5A3P25940 1745 aaPredicted RBP21.81■■□□□ 1.08
USHBP1-206ENST00000596436 GNPATO15228 680 aa21.78■■□□□ 1.08
USHBP1-206ENST00000596436 ATP6V1AP38606 617 aa21.78■■□□□ 1.08
USHBP1-206ENST00000596436 ERVV-2B6SEH9 535 aa21.77■■□□□ 1.08
USHBP1-206ENST00000596436 SLC4A9Q96Q91 983 aa21.77■■□□□ 1.08
USHBP1-206ENST00000596436 KDM6AO15550 1401 aaPredicted RBP21.76■■□□□ 1.07
USHBP1-206ENST00000596436 ZEB1P37275 1124 aaPredicted RBP21.76■■□□□ 1.07
USHBP1-206ENST00000596436 PXDNLA1KZ92 1463 aa21.75■■□□□ 1.07
USHBP1-206ENST00000596436 DCAF5Q96JK2 942 aa21.74■■□□□ 1.07
USHBP1-206ENST00000596436 TNNT2P45379 298 aaPredicted RBP21.73■■□□□ 1.07
USHBP1-206ENST00000596436 RC3H1Q5TC82 1133 aaKnown RBP21.73■■□□□ 1.07
USHBP1-206ENST00000596436 CNTNAP4Q9C0A0 1308 aa21.73■■□□□ 1.07
USHBP1-206ENST00000596436 C10orf71Q711Q0 1435 aa21.72■■□□□ 1.07
USHBP1-206ENST00000596436 C4AP0C0L4 1744 aa21.72■■□□□ 1.07
USHBP1-206ENST00000596436 PER1O15534 1290 aaPredicted RBP21.72■■□□□ 1.07
USHBP1-206ENST00000596436 HSP90AB1P08238 724 aaKnown RBP21.72■■□□□ 1.07
USHBP1-206ENST00000596436 MMP10P09238 476 aa21.72■■□□□ 1.07
USHBP1-206ENST00000596436 GPBP1L1Q9HC44 474 aaPredicted RBP21.72■■□□□ 1.07
USHBP1-206ENST00000596436 MYH14Q7Z406 1995 aaKnown RBP21.71■■□□□ 1.07
USHBP1-206ENST00000596436 ADRA2BP18089 450 aa21.71■■□□□ 1.07
USHBP1-206ENST00000596436 AMER1Q5JTC6 1135 aaPredicted RBP21.71■■□□□ 1.07
USHBP1-206ENST00000596436 RTCBQ9Y3I0 505 aaKnown RBP21.71■■□□□ 1.07
USHBP1-206ENST00000596436 KNSTRNQ9Y448 316 aa21.71■■□□□ 1.07
USHBP1-206ENST00000596436 N4BP2Q86UW6 1770 aaPredicted RBP21.7■■□□□ 1.06
USHBP1-206ENST00000596436 PLEKHO1Q53GL0 409 aaPredicted RBP21.7■■□□□ 1.06
USHBP1-206ENST00000596436 NLGN1Q8N2Q7 840 aa21.7■■□□□ 1.06
USHBP1-206ENST00000596436 BRCA1P38398 1863 aaKnown RBP21.7■■□□□ 1.06
USHBP1-206ENST00000596436 AMOTQ4VCS5 1084 aa21.69■■□□□ 1.06
USHBP1-206ENST00000596436 TRAPPC3LQ5T215 181 aa21.69■■□□□ 1.06
USHBP1-206ENST00000596436 TGFB2P61812 414 aa21.68■■□□□ 1.06
USHBP1-206ENST00000596436 TJP1Q07157 1748 aa21.68■■□□□ 1.06
USHBP1-206ENST00000596436 RPS6KA4O75676 772 aa21.67■■□□□ 1.06
USHBP1-206ENST00000596436 GYS1P13807 737 aa21.67■■□□□ 1.06
USHBP1-206ENST00000596436 ZNF530Q6P9A1 599 aaPredicted RBP21.67■■□□□ 1.06
USHBP1-206ENST00000596436 ARHGEF1Q92888 912 aaKnown RBP21.67■■□□□ 1.06
USHBP1-206ENST00000596436 WWC3Q9ULE0 1092 aa21.67■■□□□ 1.06
USHBP1-206ENST00000596436 RBM42Q9BTD8 480 aaKnown RBP21.66■■□□□ 1.06
USHBP1-206ENST00000596436 SCN11AQ9UI33 1791 aa21.66■■□□□ 1.06
USHBP1-206ENST00000596436 ADAMTS7Q9UKP4 1686 aa21.66■■□□□ 1.06
USHBP1-206ENST00000596436 AEBP1Q8IUX7 1158 aa21.65■■□□□ 1.06
USHBP1-206ENST00000596436 KIF3CO14782 793 aa21.64■■□□□ 1.05
USHBP1-206ENST00000596436 HSPA6P17066 643 aa21.64■■□□□ 1.05
USHBP1-206ENST00000596436 CABP4P57796 275 aa21.64■■□□□ 1.05
USHBP1-206ENST00000596436 MORC1Q86VD1 984 aa21.64■■□□□ 1.05
USHBP1-206ENST00000596436 ZNF526Q8TF50 670 aaPredicted RBP21.63■■□□□ 1.05
USHBP1-206ENST00000596436 ARFGEF1Q9Y6D6 1849 aa21.62■■□□□ 1.05
USHBP1-206ENST00000596436 MTHFSP49914 203 aa21.62■■□□□ 1.05
USHBP1-206ENST00000596436 NPC1L1Q9UHC9 1359 aa21.61■■□□□ 1.05
USHBP1-206ENST00000596436 IL13P35225 146 aa21.61■■□□□ 1.05
USHBP1-206ENST00000596436 RFC4P35249 363 aa21.61■■□□□ 1.05
USHBP1-206ENST00000596436 CC2D1BQ5T0F9 858 aaKnown RBP21.61■■□□□ 1.05
USHBP1-206ENST00000596436 CCDC87Q9NVE4 849 aa21.61■■□□□ 1.05
USHBP1-206ENST00000596436 MRC1P22897 1456 aa21.6■■□□□ 1.05
USHBP1-206ENST00000596436 A0A0G2JLW4 131 aa21.6■■□□□ 1.05
USHBP1-206ENST00000596436 C1orf141Q5JVX7 400 aa21.6■■□□□ 1.05
USHBP1-206ENST00000596436 NFATC2IPQ8NCF5 419 aa21.6■■□□□ 1.05
USHBP1-206ENST00000596436 KCNA3P22001 575 aa21.59■■□□□ 1.05
USHBP1-206ENST00000596436 CRKLP46109 303 aaKnown RBP21.59■■□□□ 1.05
USHBP1-206ENST00000596436 SULT6B1Q6IMI4 303 aa21.59■■□□□ 1.05
USHBP1-206ENST00000596436 USP42Q9H9J4 1324 aaKnown RBP21.58■■□□□ 1.05
USHBP1-206ENST00000596436 DPEP1P16444 411 aa21.58■■□□□ 1.05
USHBP1-206ENST00000596436 BCS1LQ9Y276 419 aa21.58■■□□□ 1.05
USHBP1-206ENST00000596436 PARP3Q9Y6F1 533 aa21.58■■□□□ 1.05
USHBP1-206ENST00000596436 PTCD1O75127 700 aaKnown RBP21.57■■□□□ 1.04
USHBP1-206ENST00000596436 CNGB1Q14028 1251 aaPredicted RBP21.57■■□□□ 1.04
USHBP1-206ENST00000596436 VIRMAQ69YN4 1812 aaKnown RBP21.56■■□□□ 1.04
USHBP1-206ENST00000596436 IFFO2Q5TF58 517 aa21.55■■□□□ 1.04
USHBP1-206ENST00000596436 INTS5Q6P9B9 1019 aaKnown RBP21.55■■□□□ 1.04
USHBP1-206ENST00000596436 DDR1Q08345 913 aa21.54■■□□□ 1.04
USHBP1-206ENST00000596436 FKBP8Q14318 412 aa21.54■■□□□ 1.04
USHBP1-206ENST00000596436 AKAP4Q5JQC9 854 aa21.54■■□□□ 1.04
USHBP1-206ENST00000596436 SRP68Q9UHB9 627 aaKnown RBP21.54■■□□□ 1.04
USHBP1-206ENST00000596436 KCPQ6ZWJ8 1503 aa21.53■■□□□ 1.04
USHBP1-206ENST00000596436 FCHSD2O94868 740 aa21.52■■□□□ 1.04
USHBP1-206ENST00000596436 TM4SF1P30408 202 aa21.52■■□□□ 1.04
USHBP1-206ENST00000596436 ARHGAP27Q6ZUM4 889 aa21.52■■□□□ 1.04
USHBP1-206ENST00000596436 SLC52A2Q9HAB3 445 aa21.52■■□□□ 1.04
USHBP1-206ENST00000596436 NRXN2Q9P2S2 1712 aa21.52■■□□□ 1.03
USHBP1-206ENST00000596436 UBR2Q8IWV8 1755 aa21.51■■□□□ 1.03
USHBP1-206ENST00000596436 TOMM70O94826 608 aa21.5■■□□□ 1.03
USHBP1-206ENST00000596436 DDX10Q13206 875 aaKnown RBP21.5■■□□□ 1.03
USHBP1-206ENST00000596436 PIM2Q9P1W9 311 aa21.5■■□□□ 1.03
USHBP1-206ENST00000596436 SOS1Q07889 1333 aaPredicted RBP21.5■■□□□ 1.03
USHBP1-206ENST00000596436 POLRMTO00411 1230 aaKnown RBP21.49■■□□□ 1.03
USHBP1-206ENST00000596436 DNAJC10Q8IXB1 793 aa21.49■■□□□ 1.03
USHBP1-206ENST00000596436 LGR6Q9HBX8 967 aa21.49■■□□□ 1.03
USHBP1-206ENST00000596436 AFDNP55196 1824 aaKnown RBP21.48■■□□□ 1.03
USHBP1-206ENST00000596436 CYP19A1P11511 503 aaPredicted RBP21.48■■□□□ 1.03
USHBP1-206ENST00000596436 DLEC1Q9Y238 1755 aa21.48■■□□□ 1.03
USHBP1-206ENST00000596436 SBF1O95248 1867 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms