RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-210	ENST00000595874	CABP4	P57796	275 aa		13.97	□□□□□ -0.17
SHKBP1-210	ENST00000595874	NLGN2	Q8NFZ4	835 aa		13.97	□□□□□ -0.17
SHKBP1-210	ENST00000595874	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
SHKBP1-210	ENST00000595874	GNPAT	O15228	680 aa		13.95	□□□□□ -0.18
SHKBP1-210	ENST00000595874	DIAPH1	O60610	1272 aa	Known RBP	13.95	□□□□□ -0.18
SHKBP1-210	ENST00000595874	PTCD1	O75127	700 aa	Known RBP	13.95	□□□□□ -0.18
SHKBP1-210	ENST00000595874	NFATC2IP	Q8NCF5	419 aa		13.94	□□□□□ -0.18
SHKBP1-210	ENST00000595874	SLC4A9	Q96Q91	983 aa		13.94	□□□□□ -0.18
SHKBP1-210	ENST00000595874	LGR6	Q9HBX8	967 aa		13.94	□□□□□ -0.18
SHKBP1-210	ENST00000595874	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.93	□□□□□ -0.18
SHKBP1-210	ENST00000595874	GPR162	Q16538	588 aa		13.93	□□□□□ -0.18
SHKBP1-210	ENST00000595874	AMOT	Q4VCS5	1084 aa		13.93	□□□□□ -0.18
SHKBP1-210	ENST00000595874	SLC16A10	Q8TF71	515 aa		13.93	□□□□□ -0.18
SHKBP1-210	ENST00000595874	DCAF5	Q96JK2	942 aa		13.93	□□□□□ -0.18
SHKBP1-210	ENST00000595874	UBR3	Q6ZT12	1888 aa		13.93	□□□□□ -0.18
SHKBP1-210	ENST00000595874	HSP90AB1	P08238	724 aa	Known RBP	13.92	□□□□□ -0.18
SHKBP1-210	ENST00000595874	MTHFSD	Q2M296	383 aa	Known RBP	13.92	□□□□□ -0.18
SHKBP1-210	ENST00000595874	SLC39A6	Q13433	755 aa		13.91	□□□□□ -0.18
SHKBP1-210	ENST00000595874	VIRMA	Q69YN4	1812 aa	Known RBP	13.91	□□□□□ -0.18
SHKBP1-210	ENST00000595874	ERVV-2	B6SEH9	535 aa		13.9	□□□□□ -0.18
SHKBP1-210	ENST00000595874	SCN11A	Q9UI33	1791 aa		13.89	□□□□□ -0.19
SHKBP1-210	ENST00000595874	COL3A1	P02461	1466 aa	Predicted RBP	13.89	□□□□□ -0.19
SHKBP1-210	ENST00000595874	KDR	P35968	1356 aa		13.89	□□□□□ -0.19
SHKBP1-210	ENST00000595874	AKAP4	Q5JQC9	854 aa		13.89	□□□□□ -0.19
SHKBP1-210	ENST00000595874	COL24A1	Q17RW2	1714 aa		13.89	□□□□□ -0.19
SHKBP1-210	ENST00000595874	RNMT	O43148	476 aa	Known RBP	13.88	□□□□□ -0.19
SHKBP1-210	ENST00000595874	PPP2R1A	P30153	589 aa		13.87	□□□□□ -0.19
SHKBP1-210	ENST00000595874	FLAD1	Q8NFF5	587 aa		13.87	□□□□□ -0.19
SHKBP1-210	ENST00000595874	SSFA2	P28290	1259 aa		13.86	□□□□□ -0.19
SHKBP1-210	ENST00000595874	DNAJC10	Q8IXB1	793 aa		13.86	□□□□□ -0.19
SHKBP1-210	ENST00000595874	SRP68	Q9UHB9	627 aa	Known RBP	13.86	□□□□□ -0.19
SHKBP1-210	ENST00000595874	RTCB	Q9Y3I0	505 aa	Known RBP	13.86	□□□□□ -0.19
SHKBP1-210	ENST00000595874	COL5A3	P25940	1745 aa	Predicted RBP	13.86	□□□□□ -0.19
SHKBP1-210	ENST00000595874	TJP1	Q07157	1748 aa		13.86	□□□□□ -0.19
SHKBP1-210	ENST00000595874	YBX3	P16989	372 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
SHKBP1-210	ENST00000595874	PRKAR2B	P31323	418 aa		13.85	□□□□□ -0.19
SHKBP1-210	ENST00000595874	TRAPPC3L	Q5T215	181 aa		13.85	□□□□□ -0.19
SHKBP1-210	ENST00000595874	ARHGEF1	Q92888	912 aa	Known RBP	13.85	□□□□□ -0.19
SHKBP1-210	ENST00000595874	CFAP53	Q96M91	514 aa		13.85	□□□□□ -0.19
SHKBP1-210	ENST00000595874	SLC52A2	Q9HAB3	445 aa		13.85	□□□□□ -0.19
SHKBP1-210	ENST00000595874	MMP10	P09238	476 aa		13.84	□□□□□ -0.19
SHKBP1-210	ENST00000595874	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.84	□□□□□ -0.19
SHKBP1-210	ENST00000595874	CRKL	P46109	303 aa	Known RBP	13.84	□□□□□ -0.19
SHKBP1-210	ENST00000595874	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
SHKBP1-210	ENST00000595874	PHACTR3	Q96KR7	559 aa		13.84	□□□□□ -0.19
SHKBP1-210	ENST00000595874	NPC1L1	Q9UHC9	1359 aa		13.83	□□□□□ -0.19
SHKBP1-210	ENST00000595874	MYH14	Q7Z406	1995 aa	Known RBP	13.83	□□□□□ -0.19
SHKBP1-210	ENST00000595874	RFC4	P35249	363 aa		13.83	□□□□□ -0.2
SHKBP1-210	ENST00000595874	C4A	P0C0L4	1744 aa		13.82	□□□□□ -0.2
SHKBP1-210	ENST00000595874	MAP3K5	Q99683	1374 aa		13.82	□□□□□ -0.2
SHKBP1-210	ENST00000595874	RPS6KA4	O75676	772 aa		13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	DCTN1	Q14203	1278 aa		13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	IL17RE	Q8NFR9	667 aa		13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	RSPH6A	Q9H0K4	717 aa		13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	CIC	Q96RK0	1608 aa	Predicted RBP	13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	CNTNAP4	Q9C0A0	1308 aa		13.81	□□□□□ -0.2
SHKBP1-210	ENST00000595874	KCNQ3	O43525	872 aa		13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	CANX	P27824	592 aa	Known RBP	13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	TEF	Q10587	303 aa		13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	DDX10	Q13206	875 aa	Known RBP	13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	INTS5	Q6P9B9	1019 aa	Known RBP	13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	MCM10	Q7L590	875 aa		13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	PLEKHG2	Q9H7P9	1386 aa		13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	KCP	Q6ZWJ8	1503 aa		13.8	□□□□□ -0.2
SHKBP1-210	ENST00000595874	GNAT3	A8MTJ3	354 aa		13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874	GYS1	P13807	737 aa		13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874	GAS2L2	Q8NHY3	880 aa		13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874	NUDC	Q9Y266	331 aa		13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874	CHD4	Q14839	1912 aa		13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874	MRC1	P22897	1456 aa		13.79	□□□□□ -0.2
SHKBP1-210	ENST00000595874		A0A0G2JLW4	131 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	PIP4K2A	P48426	406 aa	Predicted RBP	13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	FKBP8	Q14318	412 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	RC3H1	Q5TC82	1133 aa	Known RBP	13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	USPL1	Q5W0Q7	1092 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	TTC5	Q8N0Z6	440 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	CCDC87	Q9NVE4	849 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	ZBTB1	Q9Y2K1	713 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	ZNF831	Q5JPB2	1677 aa		13.78	□□□□□ -0.2
SHKBP1-210	ENST00000595874	CYP19A1	P11511	503 aa	Predicted RBP	13.77	□□□□□ -0.21
SHKBP1-210	ENST00000595874	HMGB2	P26583	209 aa	Known RBP	13.77	□□□□□ -0.21
SHKBP1-210	ENST00000595874	CD2AP	Q9Y5K6	639 aa		13.77	□□□□□ -0.21
SHKBP1-210	ENST00000595874	PARP3	Q9Y6F1	533 aa		13.77	□□□□□ -0.21
SHKBP1-210	ENST00000595874	ADAMTS7	Q9UKP4	1686 aa		13.76	□□□□□ -0.21
SHKBP1-210	ENST00000595874	BICDL1	Q6ZP65	573 aa		13.76	□□□□□ -0.21
SHKBP1-210	ENST00000595874	ZNF526	Q8TF50	670 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-210	ENST00000595874	ZNF496	Q96IT1	587 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-210	ENST00000595874	USP42	Q9H9J4	1324 aa	Known RBP	13.75	□□□□□ -0.21
SHKBP1-210	ENST00000595874	PRAMEF22	A3QJZ6	481 aa		13.75	□□□□□ -0.21
SHKBP1-210	ENST00000595874	DDR1	Q08345	913 aa		13.75	□□□□□ -0.21
SHKBP1-210	ENST00000595874	NLGN1	Q8N2Q7	840 aa		13.75	□□□□□ -0.21
SHKBP1-210	ENST00000595874	MIS18A	Q9NYP9	233 aa		13.75	□□□□□ -0.21
SHKBP1-210	ENST00000595874	SIPA1L3	O60292	1781 aa	Predicted RBP	13.74	□□□□□ -0.21
SHKBP1-210	ENST00000595874	UBR2	Q8IWV8	1755 aa		13.74	□□□□□ -0.21
SHKBP1-210	ENST00000595874	SOS1	Q07889	1333 aa	Predicted RBP	13.74	□□□□□ -0.21
SHKBP1-210	ENST00000595874	BTBD11	A6QL63	1104 aa		13.74	□□□□□ -0.21
SHKBP1-210	ENST00000595874	ZPR1	O75312	459 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms