RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 C1orf141Q5JVX7 400 aa18.72■□□□□ 0.59
CLIP3-205ENST00000592017 SLC4A9Q96Q91 983 aa18.72■□□□□ 0.59
CLIP3-205ENST00000592017 ATP6V1AP38606 617 aa18.71■□□□□ 0.59
CLIP3-205ENST00000592017 MSL1Q68DK7 614 aa18.71■□□□□ 0.59
CLIP3-205ENST00000592017 AK7Q96M32 723 aa18.71■□□□□ 0.59
CLIP3-205ENST00000592017 MAP3K5Q99683 1374 aa18.7■□□□□ 0.58
CLIP3-205ENST00000592017 ITGB4P16144 1822 aa18.7■□□□□ 0.58
CLIP3-205ENST00000592017 DCAF8L1A6NGE4 600 aa18.7■□□□□ 0.58
CLIP3-205ENST00000592017 FLAD1Q8NFF5 587 aa18.7■□□□□ 0.58
CLIP3-205ENST00000592017 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.69■□□□□ 0.58
CLIP3-205ENST00000592017 NFATC2IPQ8NCF5 419 aa18.69■□□□□ 0.58
CLIP3-205ENST00000592017 PHF14O94880 888 aa18.68■□□□□ 0.58
CLIP3-205ENST00000592017 AKAP4Q5JQC9 854 aa18.68■□□□□ 0.58
CLIP3-205ENST00000592017 RBM42Q9BTD8 480 aaKnown RBP18.68■□□□□ 0.58
CLIP3-205ENST00000592017 QSER1Q2KHR3 1735 aa18.68■□□□□ 0.58
CLIP3-205ENST00000592017 TUBGCP6Q96RT7 1819 aa18.67■□□□□ 0.58
CLIP3-205ENST00000592017 MTHFSDQ2M296 383 aaKnown RBP18.67■□□□□ 0.58
CLIP3-205ENST00000592017 KLHL34Q8N239 644 aa18.67■□□□□ 0.58
CLIP3-205ENST00000592017 LGR6Q9HBX8 967 aa18.67■□□□□ 0.58
CLIP3-205ENST00000592017 UTRNP46939 3433 aa18.66■□□□□ 0.58
CLIP3-205ENST00000592017 GNPATO15228 680 aa18.66■□□□□ 0.58
CLIP3-205ENST00000592017 NUDCQ9Y266 331 aa18.66■□□□□ 0.58
CLIP3-205ENST00000592017 C5P01031 1676 aa18.66■□□□□ 0.58
CLIP3-205ENST00000592017 C4BP0C0L5 1744 aa18.66■□□□□ 0.58
CLIP3-205ENST00000592017 SSFA2P28290 1259 aa18.65■□□□□ 0.58
CLIP3-205ENST00000592017 NLGN2Q8NFZ4 835 aa18.65■□□□□ 0.58
CLIP3-205ENST00000592017 PTCD1O75127 700 aaKnown RBP18.64■□□□□ 0.57
CLIP3-205ENST00000592017 YY1P25490 414 aa18.64■□□□□ 0.57
CLIP3-205ENST00000592017 RNMTO43148 476 aaKnown RBP18.63■□□□□ 0.57
CLIP3-205ENST00000592017 U2AF1L5P0DN76 240 aaPredicted RBP18.63■□□□□ 0.57
CLIP3-205ENST00000592017 U2AF1Q01081 240 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLIP3-205ENST00000592017 SLC52A2Q9HAB3 445 aa18.63■□□□□ 0.57
CLIP3-205ENST00000592017 RALBP1Q15311 655 aa18.62■□□□□ 0.57
CLIP3-205ENST00000592017 RC3H1Q5TC82 1133 aaKnown RBP18.62■□□□□ 0.57
CLIP3-205ENST00000592017 COL24A1Q17RW2 1714 aa18.62■□□□□ 0.57
CLIP3-205ENST00000592017 TAF1LQ8IZX4 1826 aa18.61■□□□□ 0.57
CLIP3-205ENST00000592017 PRKAR2BP31323 418 aa18.6■□□□□ 0.57
CLIP3-205ENST00000592017 RTCBQ9Y3I0 505 aaKnown RBP18.6■□□□□ 0.57
CLIP3-205ENST00000592017 CNTNAP4Q9C0A0 1308 aa18.59■□□□□ 0.57
CLIP3-205ENST00000592017 ZNF316A6NFI3 1004 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-205ENST00000592017 SLC39A6Q13433 755 aa18.59■□□□□ 0.57
CLIP3-205ENST00000592017 TRAPPC3LQ5T215 181 aa18.59■□□□□ 0.57
CLIP3-205ENST00000592017 RSPH6AQ9H0K4 717 aa18.59■□□□□ 0.57
CLIP3-205ENST00000592017 RPS6KA4O75676 772 aa18.58■□□□□ 0.56
CLIP3-205ENST00000592017 GPR162Q16538 588 aa18.58■□□□□ 0.56
CLIP3-205ENST00000592017 ARHGEF1Q92888 912 aaKnown RBP18.58■□□□□ 0.56
CLIP3-205ENST00000592017 PHACTR3Q96KR7 559 aa18.58■□□□□ 0.56
CLIP3-205ENST00000592017 CD2APQ9Y5K6 639 aa18.58■□□□□ 0.56
CLIP3-205ENST00000592017 MYBBP1AQ9BQG0 1328 aaKnown RBP18.57■□□□□ 0.56
CLIP3-205ENST00000592017 GOLGB1Q14789 3259 aaKnown RBP18.57■□□□□ 0.56
CLIP3-205ENST00000592017 IL17REQ8NFR9 667 aa18.57■□□□□ 0.56
CLIP3-205ENST00000592017 GAS2L2Q8NHY3 880 aa18.57■□□□□ 0.56
CLIP3-205ENST00000592017 ADRA2BP18089 450 aa18.56■□□□□ 0.56
CLIP3-205ENST00000592017 CRKLP46109 303 aaKnown RBP18.56■□□□□ 0.56
CLIP3-205ENST00000592017 DNAJC10Q8IXB1 793 aa18.56■□□□□ 0.56
CLIP3-205ENST00000592017 UBR3Q6ZT12 1888 aa18.56■□□□□ 0.56
CLIP3-205ENST00000592017 INTS5Q6P9B9 1019 aaKnown RBP18.55■□□□□ 0.56
CLIP3-205ENST00000592017 PELP1Q8IZL8 1130 aaKnown RBP18.55■□□□□ 0.56
CLIP3-205ENST00000592017 MRC1P22897 1456 aa18.54■□□□□ 0.56
CLIP3-205ENST00000592017 GNAT3A8MTJ3 354 aa18.54■□□□□ 0.56
CLIP3-205ENST00000592017 MMP10P09238 476 aa18.54■□□□□ 0.56
CLIP3-205ENST00000592017 FCHSD2O94868 740 aa18.53■□□□□ 0.56
CLIP3-205ENST00000592017 YBX3P16989 372 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLIP3-205ENST00000592017 RFC4P35249 363 aa18.53■□□□□ 0.56
CLIP3-205ENST00000592017 CYP19A1P11511 503 aaPredicted RBP18.52■□□□□ 0.56
CLIP3-205ENST00000592017 GYS1P13807 737 aa18.52■□□□□ 0.56
CLIP3-205ENST00000592017 NLGN1Q8N2Q7 840 aa18.52■□□□□ 0.56
CLIP3-205ENST00000592017 PRKRIP1Q9H875 184 aaPredicted RBP18.52■□□□□ 0.56
CLIP3-205ENST00000592017 ZNF831Q5JPB2 1677 aa18.52■□□□□ 0.56
CLIP3-205ENST00000592017 SRP68Q9UHB9 627 aaKnown RBP18.51■□□□□ 0.55
CLIP3-205ENST00000592017 SCN11AQ9UI33 1791 aa18.5■□□□□ 0.55
CLIP3-205ENST00000592017 NEFMP07197 916 aa18.5■□□□□ 0.55
CLIP3-205ENST00000592017 CCDC87Q9NVE4 849 aa18.5■□□□□ 0.55
CLIP3-205ENST00000592017 ADAMTS7Q9UKP4 1686 aa18.49■□□□□ 0.55
CLIP3-205ENST00000592017 KCPQ6ZWJ8 1503 aa18.49■□□□□ 0.55
CLIP3-205ENST00000592017 TEFQ10587 303 aa18.48■□□□□ 0.55
CLIP3-205ENST00000592017 FKBP8Q14318 412 aa18.48■□□□□ 0.55
CLIP3-205ENST00000592017 VSIG10Q8N0Z9 540 aa18.48■□□□□ 0.55
CLIP3-205ENST00000592017 SOS1Q07889 1333 aaPredicted RBP18.48■□□□□ 0.55
CLIP3-205ENST00000592017 CEMIPQ8WUJ3 1361 aa18.47■□□□□ 0.55
CLIP3-205ENST00000592017 COL5A3P25940 1745 aaPredicted RBP18.47■□□□□ 0.55
CLIP3-205ENST00000592017 GRIN3BO60391 1043 aa18.47■□□□□ 0.55
CLIP3-205ENST00000592017 ZNF784Q8NCA9 323 aaPredicted RBP18.47■□□□□ 0.55
CLIP3-205ENST00000592017 ZNF496Q96IT1 587 aaPredicted RBP18.47■□□□□ 0.55
CLIP3-205ENST00000592017 MYH14Q7Z406 1995 aaKnown RBP18.47■□□□□ 0.55
CLIP3-205ENST00000592017 USP42Q9H9J4 1324 aaKnown RBP18.47■□□□□ 0.55
CLIP3-205ENST00000592017 MAPK8IP3Q9UPT6 1336 aa18.47■□□□□ 0.55
CLIP3-205ENST00000592017 KCNQ3O43525 872 aa18.46■□□□□ 0.55
CLIP3-205ENST00000592017 ZNF790Q6PG37 636 aa18.46■□□□□ 0.55
CLIP3-205ENST00000592017 TTC5Q8N0Z6 440 aa18.46■□□□□ 0.55
CLIP3-205ENST00000592017 RTF1Q92541 710 aaKnown RBP18.46■□□□□ 0.55
CLIP3-205ENST00000592017 WWC3Q9ULE0 1092 aa18.46■□□□□ 0.55
CLIP3-205ENST00000592017 ZBTB1Q9Y2K1 713 aa18.46■□□□□ 0.55
CLIP3-205ENST00000592017 WDR43Q15061 677 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLIP3-205ENST00000592017 TJP1Q07157 1748 aa18.45■□□□□ 0.54
CLIP3-205ENST00000592017 DDR1Q08345 913 aa18.44■□□□□ 0.54
CLIP3-205ENST00000592017 MCM10Q7L590 875 aa18.44■□□□□ 0.54
CLIP3-205ENST00000592017 PLEKHF1Q96S99 279 aa18.44■□□□□ 0.54
CLIP3-205ENST00000592017 PNNQ9H307 717 aaKnown RBP18.44■□□□□ 0.54
CLIP3-205ENST00000592017 STARD3NLO95772 234 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms