RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 MAP3K19Q56UN5 1328 aa13.14□□□□□ -0.31
BRCA1-226ENST00000591534 SMG6Q86US8 1419 aaKnown RBP13.14□□□□□ -0.31
BRCA1-226ENST00000591534 RAPGEF4Q8WZA2 1011 aa13.14□□□□□ -0.31
BRCA1-226ENST00000591534 RTL1A6NKG5 1358 aa13.13□□□□□ -0.31
BRCA1-226ENST00000591534 ANKRD36BQ8N2N9 1353 aa13.13□□□□□ -0.31
BRCA1-226ENST00000591534 MAP3K5Q99683 1374 aa13.13□□□□□ -0.31
BRCA1-226ENST00000591534 PPP1R37O75864 691 aa13.13□□□□□ -0.31
BRCA1-226ENST00000591534 PRIM1P49642 420 aaKnown RBP13.13□□□□□ -0.31
BRCA1-226ENST00000591534 LRRC4BQ9NT99 713 aa13.13□□□□□ -0.31
BRCA1-226ENST00000591534 GPR162Q16538 588 aa13.12□□□□□ -0.31
BRCA1-226ENST00000591534 ZNF827Q17R98 1081 aa13.12□□□□□ -0.31
BRCA1-226ENST00000591534 TRPC6Q9Y210 931 aa13.12□□□□□ -0.31
BRCA1-226ENST00000591534 TATP17735 454 aaPredicted RBP13.11□□□□□ -0.31
BRCA1-226ENST00000591534 TPRNQ4KMQ1 711 aa13.11□□□□□ -0.31
BRCA1-226ENST00000591534 LTN1O94822 1766 aa13.11□□□□□ -0.31
BRCA1-226ENST00000591534 USP47Q96K76 1375 aa13.1□□□□□ -0.31
BRCA1-226ENST00000591534 ZNF784Q8NCA9 323 aaPredicted RBP13.1□□□□□ -0.31
BRCA1-226ENST00000591534 CCNL1Q9UK58 526 aaPredicted RBP13.1□□□□□ -0.31
BRCA1-226ENST00000591534 MYOM1P52179 1685 aa13.09□□□□□ -0.31
BRCA1-226ENST00000591534 FAM208AQ9UK61 1670 aaKnown RBP13.09□□□□□ -0.31
BRCA1-226ENST00000591534 FYB1O15117 783 aa13.09□□□□□ -0.31
BRCA1-226ENST00000591534 NBR1Q14596 966 aa13.09□□□□□ -0.31
BRCA1-226ENST00000591534 GGNBP2Q9H3C7 697 aa13.09□□□□□ -0.31
BRCA1-226ENST00000591534 KIF24Q5T7B8 1368 aa13.08□□□□□ -0.31
BRCA1-226ENST00000591534 RRS1Q15050 365 aaKnown RBP13.08□□□□□ -0.32
BRCA1-226ENST00000591534 NBPF6Q5VWK0 638 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 FBXO22Q8NEZ5 403 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 FLAD1Q8NFF5 587 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 MS4A3Q96HJ5 214 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 NBPF4Q96M43 638 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 PNPLA7Q6ZV29 1317 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
BRCA1-226ENST00000591534 POTEIP0CG38 1075 aa13.07□□□□□ -0.32
BRCA1-226ENST00000591534 INSRP06213 1382 aa13.07□□□□□ -0.32
BRCA1-226ENST00000591534 BTAF1O14981 1849 aa13.06□□□□□ -0.32
BRCA1-226ENST00000591534 PAPPAQ13219 1627 aa13.06□□□□□ -0.32
BRCA1-226ENST00000591534 FBLN1P23142 703 aa13.06□□□□□ -0.32
BRCA1-226ENST00000591534 PELP1Q8IZL8 1130 aaKnown RBP13.06□□□□□ -0.32
BRCA1-226ENST00000591534 FLT4P35916 1363 aa13.06□□□□□ -0.32
BRCA1-226ENST00000591534 GRIN3BO60391 1043 aa13.05□□□□□ -0.32
BRCA1-226ENST00000591534 ZEB1P37275 1124 aaPredicted RBP13.05□□□□□ -0.32
BRCA1-226ENST00000591534 SMARCC1Q92922 1105 aaPredicted RBP13.05□□□□□ -0.32
BRCA1-226ENST00000591534 TIMELESSQ9UNS1 1208 aa13.05□□□□□ -0.32
BRCA1-226ENST00000591534 UTRNP46939 3433 aa13.05□□□□□ -0.32
BRCA1-226ENST00000591534 KCNQ4P56696 695 aa13.04□□□□□ -0.32
BRCA1-226ENST00000591534 HSP90AB2PQ58FF8 381 aa13.04□□□□□ -0.32
BRCA1-226ENST00000591534 USHBP1Q8N6Y0 703 aa13.04□□□□□ -0.32
BRCA1-226ENST00000591534 TMEM106CQ9BVX2 250 aa13.04□□□□□ -0.32
BRCA1-226ENST00000591534 MEGF6O75095 1541 aa13.03□□□□□ -0.32
BRCA1-226ENST00000591534 SPG7Q9UQ90 795 aa13.03□□□□□ -0.32
BRCA1-226ENST00000591534 NSD2O96028 1365 aa13.03□□□□□ -0.32
BRCA1-226ENST00000591534 KAT6BQ8WYB5 2073 aa13.03□□□□□ -0.32
BRCA1-226ENST00000591534 MPRIPQ6WCQ1 1025 aa13.02□□□□□ -0.33
BRCA1-226ENST00000591534 CLSPNQ9HAW4 1339 aa13.02□□□□□ -0.33
BRCA1-226ENST00000591534 PPM1GO15355 546 aaPredicted RBP13.01□□□□□ -0.33
BRCA1-226ENST00000591534 C1QTNF8P60827 252 aa13.01□□□□□ -0.33
BRCA1-226ENST00000591534 COL23A1Q86Y22 540 aaPredicted RBP13.01□□□□□ -0.33
BRCA1-226ENST00000591534 AK7Q96M32 723 aa13.01□□□□□ -0.33
BRCA1-226ENST00000591534 NSD3Q9BZ95 1437 aa13□□□□□ -0.33
BRCA1-226ENST00000591534 PALLDQ8WX93 1383 aa13□□□□□ -0.33
BRCA1-226ENST00000591534 GIGYF1O75420 1035 aaPredicted RBP13□□□□□ -0.33
BRCA1-226ENST00000591534 CD2APQ9Y5K6 639 aa13□□□□□ -0.33
BRCA1-226ENST00000591534 WDR70Q9NW82 654 aa12.99□□□□□ -0.33
BRCA1-226ENST00000591534 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.99□□□□□ -0.334e-6■■■■■ 27.4
BRCA1-226ENST00000591534 QSER1Q2KHR3 1735 aa12.99□□□□□ -0.33
BRCA1-226ENST00000591534 WASHC2AQ641Q2 1341 aa12.98□□□□□ -0.33
BRCA1-226ENST00000591534 SENP3-EIF4A1A0A087X0R7 540 aa12.98□□□□□ -0.33
BRCA1-226ENST00000591534 CYP27B1O15528 508 aa12.98□□□□□ -0.33
BRCA1-226ENST00000591534 NLGN2Q8NFZ4 835 aa12.98□□□□□ -0.33
BRCA1-226ENST00000591534 MS4A4AQ96JQ5 239 aa12.98□□□□□ -0.33
BRCA1-226ENST00000591534 DOT1LQ8TEK3 1739 aa12.97□□□□□ -0.33
BRCA1-226ENST00000591534 CARD14Q9BXL6 1004 aa12.97□□□□□ -0.33
BRCA1-226ENST00000591534 TMOD3Q9NYL9 352 aa12.97□□□□□ -0.33
BRCA1-226ENST00000591534 EMILIN1Q9Y6C2 1016 aa12.97□□□□□ -0.33
BRCA1-226ENST00000591534 GOLGA2Q08379 1002 aa12.96□□□□□ -0.33
BRCA1-226ENST00000591534 MSL1Q68DK7 614 aa12.96□□□□□ -0.33
BRCA1-226ENST00000591534 LHX8Q68G74 356 aa12.96□□□□□ -0.33
BRCA1-226ENST00000591534 IFNL2Q8IZJ0 200 aa12.96□□□□□ -0.33
BRCA1-226ENST00000591534 LY75O60449 1722 aa12.96□□□□□ -0.34
BRCA1-226ENST00000591534 SSFA2P28290 1259 aa12.95□□□□□ -0.34
BRCA1-226ENST00000591534 PIGBQ92521 554 aa12.95□□□□□ -0.34
BRCA1-226ENST00000591534 PLEKHG2Q9H7P9 1386 aa12.94□□□□□ -0.34
BRCA1-226ENST00000591534 CHD4Q14839 1912 aa12.94□□□□□ -0.34
BRCA1-226ENST00000591534 LOC102724428A0A0B4J2F2 783 aa12.94□□□□□ -0.34
BRCA1-226ENST00000591534 SIK1P57059 783 aa12.94□□□□□ -0.34
BRCA1-226ENST00000591534 GOLGB1Q14789 3259 aaKnown RBP12.93□□□□□ -0.34
BRCA1-226ENST00000591534 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.93□□□□□ -0.34
BRCA1-226ENST00000591534 GALR2O43603 387 aaPredicted RBP12.93□□□□□ -0.34
BRCA1-226ENST00000591534 PHF14O94880 888 aa12.93□□□□□ -0.34
BRCA1-226ENST00000591534 HSP90AB1P08238 724 aaKnown RBP12.93□□□□□ -0.34
BRCA1-226ENST00000591534 YBX3P16989 372 aaKnown RBP eCLIP12.93□□□□□ -0.347e-6■■■□□ 18.9
BRCA1-226ENST00000591534 CCER1Q8TC90 406 aaPredicted RBP12.93□□□□□ -0.34
BRCA1-226ENST00000591534 EYA1Q99502 592 aa12.93□□□□□ -0.34
BRCA1-226ENST00000591534 POLR3GLQ9BT43 218 aa12.93□□□□□ -0.34
BRCA1-226ENST00000591534 ATP6V1AP38606 617 aa12.92□□□□□ -0.34
BRCA1-226ENST00000591534 COL24A1Q17RW2 1714 aa12.92□□□□□ -0.34
BRCA1-226ENST00000591534 KCNV2Q8TDN2 545 aa12.92□□□□□ -0.34
BRCA1-226ENST00000591534 POLKQ9UBT6 870 aa12.92□□□□□ -0.34
BRCA1-226ENST00000591534 SHANK3Q9BYB0 1731 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms