RNA–Protein interactions for RNA: ENST00000591107.6

NPC1-212, Transcript of NPC intracellular cholesterol transporter 1, human

TSL 3

Gene NPC1, Length 890 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPC1-212	ENST00000591107	YBX3	P16989	372 aa	Known RBP eCLIP	18.34	■□□□□ 0.53	3e-6	■■■■□ 19.7
NPC1-212	ENST00000591107	EYA1	Q99502	592 aa		18.33	■□□□□ 0.52
NPC1-212	ENST00000591107	WWC3	Q9ULE0	1092 aa		18.33	■□□□□ 0.52
NPC1-212	ENST00000591107	PIGB	Q92521	554 aa		18.32	■□□□□ 0.52
NPC1-212	ENST00000591107	RTN4	Q9NQC3	1192 aa	Known RBP	18.32	■□□□□ 0.52
NPC1-212	ENST00000591107	FBXO3	Q9UK99	471 aa		18.31	■□□□□ 0.52
NPC1-212	ENST00000591107	LINC00116	Q8NCU8	138 aa		18.3	■□□□□ 0.52
NPC1-212	ENST00000591107	AK7	Q96M32	723 aa		18.3	■□□□□ 0.52
NPC1-212	ENST00000591107	POLK	Q9UBT6	870 aa		18.3	■□□□□ 0.52
NPC1-212	ENST00000591107	WASHC2A	Q641Q2	1341 aa		18.29	■□□□□ 0.52
NPC1-212	ENST00000591107	ZEB1	P37275	1124 aa	Predicted RBP	18.29	■□□□□ 0.52
NPC1-212	ENST00000591107	EIF4A2	Q14240	407 aa	Known RBP	18.29	■□□□□ 0.52
NPC1-212	ENST00000591107	SENP3-EIF4A1	A0A087X0R7	540 aa		18.27	■□□□□ 0.52
NPC1-212	ENST00000591107	HSPA5	P11021	654 aa	Known RBP	18.27	■□□□□ 0.52
NPC1-212	ENST00000591107	ITPK1	Q13572	414 aa		18.27	■□□□□ 0.52
NPC1-212	ENST00000591107	ASAP1	Q9ULH1	1129 aa		18.27	■□□□□ 0.52
NPC1-212	ENST00000591107	SPG7	Q9UQ90	795 aa		18.27	■□□□□ 0.52
NPC1-212	ENST00000591107	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.26	■□□□□ 0.51
NPC1-212	ENST00000591107	PHKG2	P15735	406 aa		18.26	■□□□□ 0.51
NPC1-212	ENST00000591107	TMOD3	Q9NYL9	352 aa		18.26	■□□□□ 0.51
NPC1-212	ENST00000591107	LOC102724428	A0A0B4J2F2	783 aa		18.25	■□□□□ 0.51
NPC1-212	ENST00000591107	SIK1	P57059	783 aa		18.25	■□□□□ 0.51
NPC1-212	ENST00000591107	NKX1-1	Q15270	411 aa	Predicted RBP	18.25	■□□□□ 0.51
NPC1-212	ENST00000591107	SMARCC1	Q92922	1105 aa	Predicted RBP	18.25	■□□□□ 0.51
NPC1-212	ENST00000591107	KDR	P35968	1356 aa		18.23	■□□□□ 0.51
NPC1-212	ENST00000591107	GNPAT	O15228	680 aa		18.23	■□□□□ 0.51
NPC1-212	ENST00000591107	C1QTNF8	P60827	252 aa		18.23	■□□□□ 0.51
NPC1-212	ENST00000591107	PANK3	Q9H999	370 aa		18.23	■□□□□ 0.51
NPC1-212	ENST00000591107	KDM6A	O15550	1401 aa	Predicted RBP	18.23	■□□□□ 0.51
NPC1-212	ENST00000591107	AEBP1	Q8IUX7	1158 aa		18.22	■□□□□ 0.51
NPC1-212	ENST00000591107	IFNL2	Q8IZJ0	200 aa		18.22	■□□□□ 0.51
NPC1-212	ENST00000591107	ATP10D	Q9P241	1426 aa		18.22	■□□□□ 0.51
NPC1-212	ENST00000591107	IGSF1	Q8N6C5	1336 aa		18.22	■□□□□ 0.51
NPC1-212	ENST00000591107	COL5A3	P25940	1745 aa	Predicted RBP	18.21	■□□□□ 0.51
NPC1-212	ENST00000591107	GIGYF1	O75420	1035 aa	Predicted RBP	18.21	■□□□□ 0.51
NPC1-212	ENST00000591107	ATP6V1A	P38606	617 aa		18.21	■□□□□ 0.51
NPC1-212	ENST00000591107	ATG3	Q9NT62	314 aa		18.21	■□□□□ 0.51
NPC1-212	ENST00000591107	FLAD1	Q8NFF5	587 aa		18.2	■□□□□ 0.5
NPC1-212	ENST00000591107	SLC4A9	Q96Q91	983 aa		18.2	■□□□□ 0.5
NPC1-212	ENST00000591107	TIMELESS	Q9UNS1	1208 aa		18.2	■□□□□ 0.5
NPC1-212	ENST00000591107	CIC	Q96RK0	1608 aa	Predicted RBP	18.2	■□□□□ 0.5
NPC1-212	ENST00000591107	C4A	P0C0L4	1744 aa		18.19	■□□□□ 0.5
NPC1-212	ENST00000591107	EIF4G2	P78344	907 aa	Known RBP eCLIP	18.19	■□□□□ 0.5
NPC1-212	ENST00000591107	KIAA1551	Q9HCM1	1747 aa		18.19	■□□□□ 0.5
NPC1-212	ENST00000591107	CD2AP	Q9Y5K6	639 aa		18.19	■□□□□ 0.5
NPC1-212	ENST00000591107	SSFA2	P28290	1259 aa		18.18	■□□□□ 0.5
NPC1-212	ENST00000591107	ZNF526	Q8TF50	670 aa	Predicted RBP	18.18	■□□□□ 0.5
NPC1-212	ENST00000591107	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	18.18	■□□□□ 0.5
NPC1-212	ENST00000591107	GRIN3B	O60391	1043 aa		18.17	■□□□□ 0.5
NPC1-212	ENST00000591107	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.17	■□□□□ 0.5
NPC1-212	ENST00000591107	RBM42	Q9BTD8	480 aa	Known RBP	18.17	■□□□□ 0.5
NPC1-212	ENST00000591107	N4BP2	Q86UW6	1770 aa	Predicted RBP	18.17	■□□□□ 0.5
NPC1-212	ENST00000591107	TJP1	Q07157	1748 aa		18.15	■□□□□ 0.5
NPC1-212	ENST00000591107	ADCY9	O60503	1353 aa		18.15	■□□□□ 0.5
NPC1-212	ENST00000591107	PXDNL	A1KZ92	1463 aa		18.14	■□□□□ 0.5
NPC1-212	ENST00000591107	MMP10	P09238	476 aa		18.14	■□□□□ 0.49
NPC1-212	ENST00000591107	MORC1	Q86VD1	984 aa		18.14	■□□□□ 0.49
NPC1-212	ENST00000591107	MYH14	Q7Z406	1995 aa	Known RBP	18.13	■□□□□ 0.49
NPC1-212	ENST00000591107	ZNF831	Q5JPB2	1677 aa		18.12	■□□□□ 0.49
NPC1-212	ENST00000591107	KIF13B	Q9NQT8	1826 aa		18.12	■□□□□ 0.49
NPC1-212	ENST00000591107	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.11	■□□□□ 0.49
NPC1-212	ENST00000591107	SULT6B1	Q6IMI4	303 aa		18.11	■□□□□ 0.49
NPC1-212	ENST00000591107	DCAF5	Q96JK2	942 aa		18.11	■□□□□ 0.49
NPC1-212	ENST00000591107	SCN11A	Q9UI33	1791 aa		18.1	■□□□□ 0.49
NPC1-212	ENST00000591107	C10orf71	Q711Q0	1435 aa		18.1	■□□□□ 0.49
NPC1-212	ENST00000591107	PTCD1	O75127	700 aa	Known RBP	18.1	■□□□□ 0.49
NPC1-212	ENST00000591107	CABP4	P57796	275 aa		18.1	■□□□□ 0.49
NPC1-212	ENST00000591107	RTCB	Q9Y3I0	505 aa	Known RBP	18.1	■□□□□ 0.49
NPC1-212	ENST00000591107	SPDYE2B	A6NHP3	402 aa		18.09	■□□□□ 0.49
NPC1-212	ENST00000591107	ERVV-2	B6SEH9	535 aa		18.09	■□□□□ 0.49
NPC1-212	ENST00000591107	SPDYE6	P0CI01	402 aa		18.09	■□□□□ 0.49
NPC1-212	ENST00000591107	SPDYE2	Q495Y8	402 aa		18.09	■□□□□ 0.49
NPC1-212	ENST00000591107	VIRMA	Q69YN4	1812 aa	Known RBP	18.09	■□□□□ 0.49
NPC1-212	ENST00000591107	PLEKHG2	Q9H7P9	1386 aa		18.08	■□□□□ 0.49
NPC1-212	ENST00000591107	CNTNAP4	Q9C0A0	1308 aa		18.08	■□□□□ 0.49
NPC1-212	ENST00000591107	ARHGEF1	Q92888	912 aa	Known RBP	18.08	■□□□□ 0.48
NPC1-212	ENST00000591107	GPBP1L1	Q9HC44	474 aa	Predicted RBP	18.08	■□□□□ 0.48
NPC1-212	ENST00000591107	SRP68	Q9UHB9	627 aa	Known RBP	18.08	■□□□□ 0.48
NPC1-212	ENST00000591107	KIF7	Q2M1P5	1343 aa		18.07	■□□□□ 0.48
NPC1-212	ENST00000591107	HSP90AB1	P08238	724 aa	Known RBP	18.07	■□□□□ 0.48
NPC1-212	ENST00000591107	IL13	P35225	146 aa		18.07	■□□□□ 0.48
NPC1-212	ENST00000591107	MTHFS	P49914	203 aa		18.07	■□□□□ 0.48
NPC1-212	ENST00000591107	C1orf141	Q5JVX7	400 aa		18.07	■□□□□ 0.48
NPC1-212	ENST00000591107	TRAPPC3L	Q5T215	181 aa		18.07	■□□□□ 0.48
NPC1-212	ENST00000591107	CEP350	Q5VT06	3117 aa		18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	BRCA1	P38398	1863 aa	Known RBP	18.06	■□□□□ 0.48
NPC1-212	ENST00000591107		A0A0G2JLW4	131 aa		18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	GYS1	P13807	737 aa		18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	HMGB2	P26583	209 aa	Known RBP	18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	CNGB1	Q14028	1251 aa	Predicted RBP	18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	KNSTRN	Q9Y448	316 aa		18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	ADAMTS7	Q9UKP4	1686 aa		18.06	■□□□□ 0.48
NPC1-212	ENST00000591107	HMOX1	P09601	288 aa		18.05	■□□□□ 0.48
NPC1-212	ENST00000591107	AMOT	Q4VCS5	1084 aa		18.05	■□□□□ 0.48
NPC1-212	ENST00000591107	NFATC2IP	Q8NCF5	419 aa		18.05	■□□□□ 0.48
NPC1-212	ENST00000591107	BCS1L	Q9Y276	419 aa		18.05	■□□□□ 0.48
NPC1-212	ENST00000591107	DPEP1	P16444	411 aa		18.04	■□□□□ 0.48
NPC1-212	ENST00000591107	CRKL	P46109	303 aa	Known RBP	18.04	■□□□□ 0.48
NPC1-212	ENST00000591107	RPS6KA4	O75676	772 aa		18.03	■□□□□ 0.48
NPC1-212	ENST00000591107	RFC4	P35249	363 aa		18.03	■□□□□ 0.48

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