RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ATG3Q9NT62 314 aa16.2■□□□□ 0.18
CLIP3-204ENST00000590559 MYH14Q7Z406 1995 aaKnown RBP16.19■□□□□ 0.18
CLIP3-204ENST00000590559 SLC4A9Q96Q91 983 aa16.19■□□□□ 0.18
CLIP3-204ENST00000590559 CICQ96RK0 1608 aaPredicted RBP16.19■□□□□ 0.18
CLIP3-204ENST00000590559 ERVV-2B6SEH9 535 aa16.18■□□□□ 0.18
CLIP3-204ENST00000590559 TNNT2P45379 298 aaPredicted RBP16.18■□□□□ 0.18
CLIP3-204ENST00000590559 PCGF6Q9BYE7 350 aa16.18■□□□□ 0.18
CLIP3-204ENST00000590559 KDM6AO15550 1401 aaPredicted RBP16.18■□□□□ 0.18
CLIP3-204ENST00000590559 ATP6V1AP38606 617 aa16.17■□□□□ 0.18
CLIP3-204ENST00000590559 C4AP0C0L4 1744 aa16.16■□□□□ 0.18
CLIP3-204ENST00000590559 ADCY9O60503 1353 aa16.16■□□□□ 0.18
CLIP3-204ENST00000590559 SCN11AQ9UI33 1791 aa16.16■□□□□ 0.18
CLIP3-204ENST00000590559 PHF14O94880 888 aa16.16■□□□□ 0.18
CLIP3-204ENST00000590559 VIRMAQ69YN4 1812 aaKnown RBP16.15■□□□□ 0.18
CLIP3-204ENST00000590559 DCAF5Q96JK2 942 aa16.15■□□□□ 0.18
CLIP3-204ENST00000590559 POLR3GLQ9BT43 218 aa16.15■□□□□ 0.18
CLIP3-204ENST00000590559 BRCA1P38398 1863 aaKnown RBP16.14■□□□□ 0.17
CLIP3-204ENST00000590559 GNPATO15228 680 aa16.14■□□□□ 0.17
CLIP3-204ENST00000590559 TJP1Q07157 1748 aa16.14■□□□□ 0.17
CLIP3-204ENST00000590559 N4BP2Q86UW6 1770 aaPredicted RBP16.13■□□□□ 0.17
CLIP3-204ENST00000590559 GIGYF1O75420 1035 aaPredicted RBP16.13■□□□□ 0.17
CLIP3-204ENST00000590559 HSP90AB1P08238 724 aaKnown RBP16.13■□□□□ 0.17
CLIP3-204ENST00000590559 AMOTQ4VCS5 1084 aa16.13■□□□□ 0.17
CLIP3-204ENST00000590559 PLEKHO1Q53GL0 409 aaPredicted RBP16.13■□□□□ 0.17
CLIP3-204ENST00000590559 RC3H1Q5TC82 1133 aaKnown RBP16.13■□□□□ 0.17
CLIP3-204ENST00000590559 ADAMTS7Q9UKP4 1686 aa16.13■□□□□ 0.17
CLIP3-204ENST00000590559 ATP10DQ9P241 1426 aa16.12■□□□□ 0.17
CLIP3-204ENST00000590559 AEBP1Q8IUX7 1158 aa16.12■□□□□ 0.17
CLIP3-204ENST00000590559 CNTNAP4Q9C0A0 1308 aa16.12■□□□□ 0.17
CLIP3-204ENST00000590559 SENP3-EIF4A1A0A087X0R7 540 aa16.11■□□□□ 0.17
CLIP3-204ENST00000590559 PXDNLA1KZ92 1463 aa16.1■□□□□ 0.17
CLIP3-204ENST00000590559 IL13P35225 146 aa16.1■□□□□ 0.17
CLIP3-204ENST00000590559 ZNF530Q6P9A1 599 aaPredicted RBP16.1■□□□□ 0.17
CLIP3-204ENST00000590559 C10orf71Q711Q0 1435 aa16.1■□□□□ 0.17
CLIP3-204ENST00000590559 RPS6KA4O75676 772 aa16.09■□□□□ 0.17
CLIP3-204ENST00000590559 MMP10P09238 476 aa16.09■□□□□ 0.17
CLIP3-204ENST00000590559 ADRA2BP18089 450 aa16.09■□□□□ 0.17
CLIP3-204ENST00000590559 AMER1Q5JTC6 1135 aaPredicted RBP16.09■□□□□ 0.17
CLIP3-204ENST00000590559 TRAPPC3LQ5T215 181 aa16.09■□□□□ 0.17
CLIP3-204ENST00000590559 MORC1Q86VD1 984 aa16.09■□□□□ 0.17
CLIP3-204ENST00000590559 ARHGEF1Q92888 912 aaKnown RBP16.09■□□□□ 0.17
CLIP3-204ENST00000590559 RTCBQ9Y3I0 505 aaKnown RBP16.09■□□□□ 0.17
CLIP3-204ENST00000590559 GYS1P13807 737 aa16.08■□□□□ 0.16
CLIP3-204ENST00000590559 NLGN1Q8N2Q7 840 aa16.08■□□□□ 0.16
CLIP3-204ENST00000590559 MTHFSP49914 203 aa16.07■□□□□ 0.16
CLIP3-204ENST00000590559 CABP4P57796 275 aa16.07■□□□□ 0.16
CLIP3-204ENST00000590559 SULT6B1Q6IMI4 303 aa16.07■□□□□ 0.16
CLIP3-204ENST00000590559 RBM42Q9BTD8 480 aaKnown RBP16.07■□□□□ 0.16
CLIP3-204ENST00000590559 ARFGEF1Q9Y6D6 1849 aa16.07■□□□□ 0.16
CLIP3-204ENST00000590559 MRC1P22897 1456 aa16.06■□□□□ 0.16
CLIP3-204ENST00000590559 NFATC2IPQ8NCF5 419 aa16.06■□□□□ 0.16
CLIP3-204ENST00000590559 KNSTRNQ9Y448 316 aa16.06■□□□□ 0.16
CLIP3-204ENST00000590559 PER1O15534 1290 aaPredicted RBP16.05■□□□□ 0.16
CLIP3-204ENST00000590559 TGFB2P61812 414 aa16.05■□□□□ 0.16
CLIP3-204ENST00000590559 KIF7Q2M1P5 1343 aa16.04■□□□□ 0.16
CLIP3-204ENST00000590559 C1orf141Q5JVX7 400 aa16.04■□□□□ 0.16
CLIP3-204ENST00000590559 UBR2Q8IWV8 1755 aa16.04■□□□□ 0.16
CLIP3-204ENST00000590559 CRKLP46109 303 aaKnown RBP16.03■□□□□ 0.16
CLIP3-204ENST00000590559 CCER1Q8TC90 406 aaPredicted RBP16.03■□□□□ 0.16
CLIP3-204ENST00000590559 GPBP1L1Q9HC44 474 aaPredicted RBP16.03■□□□□ 0.16
CLIP3-204ENST00000590559 WWC3Q9ULE0 1092 aa16.03■□□□□ 0.16
CLIP3-204ENST00000590559 PTCD1O75127 700 aaKnown RBP16.02■□□□□ 0.16
CLIP3-204ENST00000590559 KCNA3P22001 575 aa16.02■□□□□ 0.16
CLIP3-204ENST00000590559 RFC4P35249 363 aa16.02■□□□□ 0.16
CLIP3-204ENST00000590559 AKAP4Q5JQC9 854 aa16.02■□□□□ 0.16
CLIP3-204ENST00000590559 KCPQ6ZWJ8 1503 aa16.02■□□□□ 0.15
CLIP3-204ENST00000590559 A0A0G2JLW4 131 aa16.01■□□□□ 0.15
CLIP3-204ENST00000590559 INTS5Q6P9B9 1019 aaKnown RBP16.01■□□□□ 0.15
CLIP3-204ENST00000590559 SLC52A2Q9HAB3 445 aa16.01■□□□□ 0.15
CLIP3-204ENST00000590559 LGR6Q9HBX8 967 aa16.01■□□□□ 0.15
CLIP3-204ENST00000590559 NRXN2Q9P2S2 1712 aa16.01■□□□□ 0.15
CLIP3-204ENST00000590559 AFDNP55196 1824 aaKnown RBP16.01■□□□□ 0.15
CLIP3-204ENST00000590559 USP42Q9H9J4 1324 aaKnown RBP16■□□□□ 0.15
CLIP3-204ENST00000590559 COL3A1P02461 1466 aaPredicted RBP16■□□□□ 0.15
CLIP3-204ENST00000590559 CCDC87Q9NVE4 849 aa16■□□□□ 0.15
CLIP3-204ENST00000590559 SIPA1L3O60292 1781 aaPredicted RBP16■□□□□ 0.15
CLIP3-204ENST00000590559 KIF3CO14782 793 aa15.99■□□□□ 0.15
CLIP3-204ENST00000590559 DPEP1P16444 411 aa15.99■□□□□ 0.15
CLIP3-204ENST00000590559 FKBP8Q14318 412 aa15.99■□□□□ 0.15
CLIP3-204ENST00000590559 SRP68Q9UHB9 627 aaKnown RBP15.99■□□□□ 0.15
CLIP3-204ENST00000590559 SBF1O95248 1867 aa15.99■□□□□ 0.15
CLIP3-204ENST00000590559 RNMTO43148 476 aaKnown RBP15.98■□□□□ 0.15
CLIP3-204ENST00000590559 TM4SF1P30408 202 aa15.98■□□□□ 0.15
CLIP3-204ENST00000590559 DDR1Q08345 913 aa15.98■□□□□ 0.15
CLIP3-204ENST00000590559 PARP3Q9Y6F1 533 aa15.98■□□□□ 0.15
CLIP3-204ENST00000590559 MTHFSDQ2M296 383 aaKnown RBP15.97■□□□□ 0.15
CLIP3-204ENST00000590559 ZNF526Q8TF50 670 aaPredicted RBP15.97■□□□□ 0.15
CLIP3-204ENST00000590559 BCS1LQ9Y276 419 aa15.97■□□□□ 0.15
CLIP3-204ENST00000590559 DLEC1Q9Y238 1755 aa15.97■□□□□ 0.15
CLIP3-204ENST00000590559 NPC1L1Q9UHC9 1359 aa15.97■□□□□ 0.15
CLIP3-204ENST00000590559 SOS1Q07889 1333 aaPredicted RBP15.96■□□□□ 0.15
CLIP3-204ENST00000590559 HMOX1P09601 288 aa15.96■□□□□ 0.15
CLIP3-204ENST00000590559 CYP19A1P11511 503 aaPredicted RBP15.96■□□□□ 0.15
CLIP3-204ENST00000590559 DNAJC10Q8IXB1 793 aa15.96■□□□□ 0.15
CLIP3-204ENST00000590559 POLRMTO00411 1230 aaKnown RBP15.95■□□□□ 0.14
CLIP3-204ENST00000590559 HSPA6P17066 643 aa15.95■□□□□ 0.14
CLIP3-204ENST00000590559 DIAPH1O60610 1272 aaKnown RBP15.94■□□□□ 0.14
CLIP3-204ENST00000590559 SLC39A6Q13433 755 aa15.94■□□□□ 0.14
CLIP3-204ENST00000590559 VSIG10Q8N0Z9 540 aa15.94■□□□□ 0.14
CLIP3-204ENST00000590559 FCHSD2O94868 740 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms