RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 DISP2A7MBM2 1401 aa15.54■□□□□ 0.08
SMAD4-211ENST00000590499 C11orf95C9JLR9 678 aaPredicted RBP15.54■□□□□ 0.08
SMAD4-211ENST00000590499 ANKRD13DQ6ZTN6 518 aa15.54■□□□□ 0.08
SMAD4-211ENST00000590499 TOM1L2Q6ZVM7 507 aa15.54■□□□□ 0.08
SMAD4-211ENST00000590499 GGNBP2Q9H3C7 697 aa15.54■□□□□ 0.08
SMAD4-211ENST00000590499 FAM208AQ9UK61 1670 aaKnown RBP15.54■□□□□ 0.08
SMAD4-211ENST00000590499 MAP3K19Q56UN5 1328 aa15.53■□□□□ 0.08
SMAD4-211ENST00000590499 CARD10Q9BWT7 1032 aa15.53■□□□□ 0.08
SMAD4-211ENST00000590499 RGPD1P0DJD0 1748 aa15.53■□□□□ 0.08
SMAD4-211ENST00000590499 TNS1Q9HBL0 1735 aaKnown RBP15.53■□□□□ 0.08
SMAD4-211ENST00000590499 PEAK1Q9H792 1746 aa15.52■□□□□ 0.08
SMAD4-211ENST00000590499 ANKRD26Q9UPS8 1709 aa15.52■□□□□ 0.08
SMAD4-211ENST00000590499 FBLN1P23142 703 aa15.52■□□□□ 0.08
SMAD4-211ENST00000590499 FAM182BQ5T319 152 aa15.52■□□□□ 0.08
SMAD4-211ENST00000590499 IP6K1Q92551 441 aa15.51■□□□□ 0.07
SMAD4-211ENST00000590499 KHSRPQ92945 711 aaKnown RBP eCLIP15.51■□□□□ 0.07
SMAD4-211ENST00000590499 RTL1A6NKG5 1358 aa15.5■□□□□ 0.07
SMAD4-211ENST00000590499 CCDC7Q96M83 1385 aa15.5■□□□□ 0.07
SMAD4-211ENST00000590499 ZNF316A6NFI3 1004 aaPredicted RBP15.5■□□□□ 0.07
SMAD4-211ENST00000590499 CSB-PGBD3P0DP91 1061 aa15.5■□□□□ 0.07
SMAD4-211ENST00000590499 ANKRD24Q8TF21 1146 aa15.5■□□□□ 0.07
SMAD4-211ENST00000590499 POLR3GLQ9BT43 218 aa15.5■□□□□ 0.07
SMAD4-211ENST00000590499 HOXC9P31274 260 aa15.49■□□□□ 0.07
SMAD4-211ENST00000590499 RGPD2P0DJD1 1756 aa15.49■□□□□ 0.07
SMAD4-211ENST00000590499 CGNL1Q0VF96 1302 aa15.48■□□□□ 0.07
SMAD4-211ENST00000590499 KIF7Q2M1P5 1343 aa15.48■□□□□ 0.07
SMAD4-211ENST00000590499 SBF2Q86WG5 1849 aa15.48■□□□□ 0.07
SMAD4-211ENST00000590499 RRS1Q15050 365 aaKnown RBP15.48■□□□□ 0.07
SMAD4-211ENST00000590499 CDCA7Q9BWT1 371 aaPredicted RBP15.48■□□□□ 0.07
SMAD4-211ENST00000590499 PDE3BQ13370 1112 aa15.47■□□□□ 0.07
SMAD4-211ENST00000590499 FAM196AQ6ZSG2 479 aa15.47■□□□□ 0.07
SMAD4-211ENST00000590499 PANK3Q9H999 370 aa15.47■□□□□ 0.07
SMAD4-211ENST00000590499 MAP2P11137 1827 aaKnown RBP15.47■□□□□ 0.07
SMAD4-211ENST00000590499 KIF24Q5T7B8 1368 aa15.47■□□□□ 0.07
SMAD4-211ENST00000590499 TNS2Q63HR2 1409 aa15.46■□□□□ 0.07
SMAD4-211ENST00000590499 LSM11P83369 360 aaKnown RBP eCLIP15.46■□□□□ 0.07
SMAD4-211ENST00000590499 DDB1Q16531 1140 aa15.46■□□□□ 0.07
SMAD4-211ENST00000590499 DEFB132Q7Z7B7 95 aa15.46■□□□□ 0.07
SMAD4-211ENST00000590499 FBXO22Q8NEZ5 403 aa15.46■□□□□ 0.07
SMAD4-211ENST00000590499 MFRPQ9BY79 579 aa15.46■□□□□ 0.07
SMAD4-211ENST00000590499 SRCAPQ6ZRS2 3230 aa15.45■□□□□ 0.06
SMAD4-211ENST00000590499 OVOS2A0A0G2JMS6 1433 aa15.45■□□□□ 0.06
SMAD4-211ENST00000590499 BCL9O00512 1426 aa15.45■□□□□ 0.06
SMAD4-211ENST00000590499 AMPHP49418 695 aa15.45■□□□□ 0.06
SMAD4-211ENST00000590499 NLRP2Q9NX02 1062 aa15.45■□□□□ 0.06
SMAD4-211ENST00000590499 FLT4P35916 1363 aa15.45■□□□□ 0.06
SMAD4-211ENST00000590499 SF3B2Q13435 895 aaKnown RBP15.44■□□□□ 0.06
SMAD4-211ENST00000590499 INSRP06213 1382 aa15.44■□□□□ 0.06
SMAD4-211ENST00000590499 MARCH10Q8NA82 808 aaPredicted RBP15.43■□□□□ 0.06
SMAD4-211ENST00000590499 NSD2O96028 1365 aa15.43■□□□□ 0.06
SMAD4-211ENST00000590499 TRIM37O94972 964 aa15.42■□□□□ 0.06
SMAD4-211ENST00000590499 LTV1Q96GA3 475 aaPredicted RBP15.42■□□□□ 0.06
SMAD4-211ENST00000590499 EMILIN1Q9Y6C2 1016 aa15.42■□□□□ 0.06
SMAD4-211ENST00000590499 SHANK3Q9BYB0 1731 aa15.41■□□□□ 0.06
SMAD4-211ENST00000590499 IL2RBP14784 551 aa15.41■□□□□ 0.06
SMAD4-211ENST00000590499 BAG6P46379 1132 aa15.41■□□□□ 0.06
SMAD4-211ENST00000590499 HSP90AB2PQ58FF8 381 aa15.41■□□□□ 0.06
SMAD4-211ENST00000590499 EXOC5O00471 708 aa15.4■□□□□ 0.06
SMAD4-211ENST00000590499 SMG6Q86US8 1419 aaKnown RBP15.4■□□□□ 0.06
SMAD4-211ENST00000590499 WASHC2AQ641Q2 1341 aa15.4■□□□□ 0.06
SMAD4-211ENST00000590499 RGPD3A6NKT7 1758 aaPredicted RBP15.39■□□□□ 0.05
SMAD4-211ENST00000590499 RGPD4Q7Z3J3 1758 aa15.39■□□□□ 0.05
SMAD4-211ENST00000590499 MEGF6O75095 1541 aa15.39■□□□□ 0.05
SMAD4-211ENST00000590499 RREB1Q92766 1687 aa15.39■□□□□ 0.05
SMAD4-211ENST00000590499 POLKQ9UBT6 870 aa15.39■□□□□ 0.05
SMAD4-211ENST00000590499 NCAPD2Q15021 1401 aa15.39■□□□□ 0.05
SMAD4-211ENST00000590499 EN1Q05925 392 aaPredicted RBP15.38■□□□□ 0.05
SMAD4-211ENST00000590499 AMER1Q5JTC6 1135 aaPredicted RBP15.38■□□□□ 0.05
SMAD4-211ENST00000590499 NBPF6Q5VWK0 638 aa15.38■□□□□ 0.05
SMAD4-211ENST00000590499 NBPF4Q96M43 638 aa15.38■□□□□ 0.05
SMAD4-211ENST00000590499 NHSQ6T4R5 1651 aa15.38■□□□□ 0.05
SMAD4-211ENST00000590499 CAMKK2Q96RR4 588 aa15.37■□□□□ 0.05
SMAD4-211ENST00000590499 PARD3Q8TEW0 1356 aa15.36■□□□□ 0.05
SMAD4-211ENST00000590499 PER1O15534 1290 aaPredicted RBP15.36■□□□□ 0.05
SMAD4-211ENST00000590499 HS6ST3Q8IZP7 471 aa15.36■□□□□ 0.05
SMAD4-211ENST00000590499 KNSTRNQ9Y448 316 aa15.36■□□□□ 0.05
SMAD4-211ENST00000590499 NUP188Q5SRE5 1749 aa15.36■□□□□ 0.05
SMAD4-211ENST00000590499 APBA3O96018 575 aa15.35■□□□□ 0.05
SMAD4-211ENST00000590499 PTF1AQ7RTS3 328 aa15.35■□□□□ 0.05
SMAD4-211ENST00000590499 TNNT2P45379 298 aaPredicted RBP15.34■□□□□ 0.05
SMAD4-211ENST00000590499 EZH2Q15910 746 aaKnown RBP15.34■□□□□ 0.05
SMAD4-211ENST00000590499 USHBP1Q8N6Y0 703 aa15.34■□□□□ 0.05
SMAD4-211ENST00000590499 PKD1L3Q7Z443 1732 aa15.34■□□□□ 0.05
SMAD4-211ENST00000590499 KAT6BQ8WYB5 2073 aa15.33■□□□□ 0.04
SMAD4-211ENST00000590499 PPM1GO15355 546 aaPredicted RBP15.33■□□□□ 0.04
SMAD4-211ENST00000590499 PBX2P40425 430 aa15.33■□□□□ 0.04
SMAD4-211ENST00000590499 POTEEQ6S8J3 1075 aa15.33■□□□□ 0.04
SMAD4-211ENST00000590499 MORC1Q86VD1 984 aa15.32■□□□□ 0.04
SMAD4-211ENST00000590499 NPC1L1Q9UHC9 1359 aa15.32■□□□□ 0.04
SMAD4-211ENST00000590499 BTAF1O14981 1849 aa15.31■□□□□ 0.04
SMAD4-211ENST00000590499 KIF3CO14782 793 aa15.31■□□□□ 0.04
SMAD4-211ENST00000590499 NUDT7P0C024 238 aa15.31■□□□□ 0.04
SMAD4-211ENST00000590499 DOT1LQ8TEK3 1739 aa15.31■□□□□ 0.04
SMAD4-211ENST00000590499 PLSCR1O15162 318 aa15.3■□□□□ 0.04
SMAD4-211ENST00000590499 EIF4A2Q14240 407 aaKnown RBP15.3■□□□□ 0.04
SMAD4-211ENST00000590499 ZCRB1Q8TBF4 217 aaKnown RBP15.3■□□□□ 0.04
SMAD4-211ENST00000590499 EYA1Q99502 592 aa15.3■□□□□ 0.04
SMAD4-211ENST00000590499 KCNQ2O43526 872 aa15.29■□□□□ 0.04
SMAD4-211ENST00000590499 DDX54Q8TDD1 881 aaKnown RBP15.29■□□□□ 0.04
SMAD4-211ENST00000590499 RAPGEF4Q8WZA2 1011 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms