RNA–Protein interactions for RNA: ENST00000589933.1

TMC6-213, Transcript of transmembrane channel like 6, human

TSL 3

Gene TMC6, Length 580 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMC6-213	ENST00000589933	C1orf141	Q5JVX7	400 aa		28.72	■■■□□ 2.19
TMC6-213	ENST00000589933	LINC00116	Q8NCU8	138 aa		28.71	■■■□□ 2.19
TMC6-213	ENST00000589933	ATG3	Q9NT62	314 aa		28.71	■■■□□ 2.19
TMC6-213	ENST00000589933	GNPAT	O15228	680 aa		28.7	■■■□□ 2.18
TMC6-213	ENST00000589933	CABP4	P57796	275 aa		28.69	■■■□□ 2.18
TMC6-213	ENST00000589933	RBM42	Q9BTD8	480 aa	Known RBP	28.68	■■■□□ 2.18
TMC6-213	ENST00000589933	ZNF831	Q5JPB2	1677 aa		28.67	■■■□□ 2.18
TMC6-213	ENST00000589933	MTHFS	P49914	203 aa		28.67	■■■□□ 2.18
TMC6-213	ENST00000589933	ITPK1	Q13572	414 aa		28.66	■■■□□ 2.18
TMC6-213	ENST00000589933	SULT6B1	Q6IMI4	303 aa		28.66	■■■□□ 2.18
TMC6-213	ENST00000589933	RTCB	Q9Y3I0	505 aa	Known RBP	28.65	■■■□□ 2.18
TMC6-213	ENST00000589933	KIF7	Q2M1P5	1343 aa		28.65	■■■□□ 2.18
TMC6-213	ENST00000589933	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.62	■■■□□ 2.17
TMC6-213	ENST00000589933	TRAPPC3L	Q5T215	181 aa		28.62	■■■□□ 2.17
TMC6-213	ENST00000589933	AEBP1	Q8IUX7	1158 aa		28.62	■■■□□ 2.17
TMC6-213	ENST00000589933	YBX3	P16989	372 aa	Known RBP eCLIP	28.61	■■■□□ 2.17
TMC6-213	ENST00000589933	AMIGO3	Q86WK7	504 aa		28.61	■■■□□ 2.17
TMC6-213	ENST00000589933	IL13	P35225	146 aa		28.6	■■■□□ 2.17
TMC6-213	ENST00000589933	RC3H1	Q5TC82	1133 aa	Known RBP	28.6	■■■□□ 2.17
TMC6-213	ENST00000589933	KDR	P35968	1356 aa		28.6	■■■□□ 2.17
TMC6-213	ENST00000589933	KDM6A	O15550	1401 aa	Predicted RBP	28.6	■■■□□ 2.17
TMC6-213	ENST00000589933	ADRA2B	P18089	450 aa		28.59	■■■□□ 2.17
TMC6-213	ENST00000589933	SMIM5	Q71RC9	77 aa		28.59	■■■□□ 2.17
TMC6-213	ENST00000589933	SCN11A	Q9UI33	1791 aa		28.59	■■■□□ 2.17
TMC6-213	ENST00000589933	COL5A3	P25940	1745 aa	Predicted RBP	28.58	■■■□□ 2.17
TMC6-213	ENST00000589933	NLGN1	Q8N2Q7	840 aa		28.57	■■■□□ 2.16
TMC6-213	ENST00000589933	CNTNAP4	Q9C0A0	1308 aa		28.57	■■■□□ 2.16
TMC6-213	ENST00000589933	NFATC2IP	Q8NCF5	419 aa		28.56	■■■□□ 2.16
TMC6-213	ENST00000589933	RFC4	P35249	363 aa		28.55	■■■□□ 2.16
TMC6-213	ENST00000589933	AKAP4	Q5JQC9	854 aa		28.55	■■■□□ 2.16
TMC6-213	ENST00000589933	VIRMA	Q69YN4	1812 aa	Known RBP	28.54	■■■□□ 2.16
TMC6-213	ENST00000589933	PTCD1	O75127	700 aa	Known RBP	28.53	■■■□□ 2.16
TMC6-213	ENST00000589933	GIGYF1	O75420	1035 aa	Predicted RBP	28.53	■■■□□ 2.16
TMC6-213	ENST00000589933	RPS6KA4	O75676	772 aa		28.53	■■■□□ 2.16
TMC6-213	ENST00000589933	MMP10	P09238	476 aa		28.53	■■■□□ 2.16
TMC6-213	ENST00000589933	SLC4A9	Q96Q91	983 aa		28.53	■■■□□ 2.16
TMC6-213	ENST00000589933	CC2D1B	Q5T0F9	858 aa	Known RBP	28.52	■■■□□ 2.16
TMC6-213	ENST00000589933	DIAPH1	O60610	1272 aa	Known RBP	28.51	■■■□□ 2.15
TMC6-213	ENST00000589933	C1QTNF8	P60827	252 aa		28.51	■■■□□ 2.15
TMC6-213	ENST00000589933	MYH14	Q7Z406	1995 aa	Known RBP	28.51	■■■□□ 2.15
TMC6-213	ENST00000589933	ARHGEF1	Q92888	912 aa	Known RBP	28.5	■■■□□ 2.15
TMC6-213	ENST00000589933	PER1	O15534	1290 aa	Predicted RBP	28.49	■■■□□ 2.15
TMC6-213	ENST00000589933	HMOX1	P09601	288 aa		28.48	■■■□□ 2.15
TMC6-213	ENST00000589933	KIF13B	Q9NQT8	1826 aa		28.48	■■■□□ 2.15
TMC6-213	ENST00000589933	CCDC87	Q9NVE4	849 aa		28.47	■■■□□ 2.15
TMC6-213	ENST00000589933	PARP3	Q9Y6F1	533 aa		28.47	■■■□□ 2.15
TMC6-213	ENST00000589933	CRKL	P46109	303 aa	Known RBP	28.46	■■■□□ 2.15
TMC6-213	ENST00000589933	SLC52A2	Q9HAB3	445 aa		28.46	■■■□□ 2.15
TMC6-213	ENST00000589933	UTRN	P46939	3433 aa		28.46	■■■□□ 2.15
TMC6-213	ENST00000589933	C4A	P0C0L4	1744 aa		28.46	■■■□□ 2.15
TMC6-213	ENST00000589933	CIC	Q96RK0	1608 aa	Predicted RBP	28.45	■■■□□ 2.14
TMC6-213	ENST00000589933	TGFB2	P61812	414 aa		28.45	■■■□□ 2.14
TMC6-213	ENST00000589933	NPC1L1	Q9UHC9	1359 aa		28.45	■■■□□ 2.14
TMC6-213	ENST00000589933	SENP3-EIF4A1	A0A087X0R7	540 aa		28.43	■■■□□ 2.14
TMC6-213	ENST00000589933	GYS1	P13807	737 aa		28.43	■■■□□ 2.14
TMC6-213	ENST00000589933	WWC3	Q9ULE0	1092 aa		28.43	■■■□□ 2.14
TMC6-213	ENST00000589933	TJP1	Q07157	1748 aa		28.43	■■■□□ 2.14
TMC6-213	ENST00000589933	RNMT	O43148	476 aa	Known RBP	28.42	■■■□□ 2.14
TMC6-213	ENST00000589933	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.41	■■■□□ 2.14
TMC6-213	ENST00000589933	ATP10D	Q9P241	1426 aa		28.41	■■■□□ 2.14
TMC6-213	ENST00000589933	CNGB1	Q14028	1251 aa	Predicted RBP	28.4	■■■□□ 2.14
TMC6-213	ENST00000589933	LGR6	Q9HBX8	967 aa		28.4	■■■□□ 2.14
TMC6-213	ENST00000589933	GPBP1L1	Q9HC44	474 aa	Predicted RBP	28.39	■■■□□ 2.14
TMC6-213	ENST00000589933	U2SURP	O15042	1029 aa	Known RBP	28.38	■■■□□ 2.13
TMC6-213	ENST00000589933	MTHFSD	Q2M296	383 aa	Known RBP	28.38	■■■□□ 2.13
TMC6-213	ENST00000589933	MRC1	P22897	1456 aa		28.38	■■■□□ 2.13
TMC6-213	ENST00000589933	C10orf71	Q711Q0	1435 aa		28.37	■■■□□ 2.13
TMC6-213	ENST00000589933	ZPR1	O75312	459 aa		28.37	■■■□□ 2.13
TMC6-213	ENST00000589933	USP42	Q9H9J4	1324 aa	Known RBP	28.37	■■■□□ 2.13
TMC6-213	ENST00000589933	PXDNL	A1KZ92	1463 aa		28.36	■■■□□ 2.13
TMC6-213	ENST00000589933	DNAJC10	Q8IXB1	793 aa		28.36	■■■□□ 2.13
TMC6-213	ENST00000589933	CFAP53	Q96M91	514 aa		28.36	■■■□□ 2.13
TMC6-213	ENST00000589933	GAS2L2	Q8NHY3	880 aa		28.35	■■■□□ 2.13
TMC6-213	ENST00000589933	BCS1L	Q9Y276	419 aa		28.35	■■■□□ 2.13
TMC6-213	ENST00000589933		A0A0G2JLW4	131 aa		28.34	■■■□□ 2.13
TMC6-213	ENST00000589933	TTC5	Q8N0Z6	440 aa		28.34	■■■□□ 2.13
TMC6-213	ENST00000589933	ADAMTS7	Q9UKP4	1686 aa		28.33	■■■□□ 2.13
TMC6-213	ENST00000589933	KIAA1551	Q9HCM1	1747 aa		28.33	■■■□□ 2.13
TMC6-213	ENST00000589933	SLC39A6	Q13433	755 aa		28.33	■■■□□ 2.13
TMC6-213	ENST00000589933	INTS5	Q6P9B9	1019 aa	Known RBP	28.33	■■■□□ 2.13
TMC6-213	ENST00000589933	VSIG10	Q8N0Z9	540 aa		28.33	■■■□□ 2.13
TMC6-213	ENST00000589933	TEF	Q10587	303 aa		28.32	■■■□□ 2.12
TMC6-213	ENST00000589933	SRP68	Q9UHB9	627 aa	Known RBP	28.32	■■■□□ 2.12
TMC6-213	ENST00000589933	ADCY9	O60503	1353 aa		28.32	■■■□□ 2.12
TMC6-213	ENST00000589933	BRCA1	P38398	1863 aa	Known RBP	28.3	■■■□□ 2.12
TMC6-213	ENST00000589933	GNAT3	A8MTJ3	354 aa		28.3	■■■□□ 2.12
TMC6-213	ENST00000589933	FCHSD2	O94868	740 aa		28.3	■■■□□ 2.12
TMC6-213	ENST00000589933	DPEP1	P16444	411 aa		28.3	■■■□□ 2.12
TMC6-213	ENST00000589933	FKBP8	Q14318	412 aa		28.3	■■■□□ 2.12
TMC6-213	ENST00000589933	COL3A1	P02461	1466 aa	Predicted RBP	28.29	■■■□□ 2.12
TMC6-213	ENST00000589933	CYP19A1	P11511	503 aa	Predicted RBP	28.29	■■■□□ 2.12
TMC6-213	ENST00000589933	ZNF526	Q8TF50	670 aa	Predicted RBP	28.29	■■■□□ 2.12
TMC6-213	ENST00000589933	NUDC	Q9Y266	331 aa		28.29	■■■□□ 2.12
TMC6-213	ENST00000589933	SOS1	Q07889	1333 aa	Predicted RBP	28.28	■■■□□ 2.12
TMC6-213	ENST00000589933	ARFGEF1	Q9Y6D6	1849 aa		28.28	■■■□□ 2.12
TMC6-213	ENST00000589933	ARHGAP27	Q6ZUM4	889 aa		28.28	■■■□□ 2.12
TMC6-213	ENST00000589933	UBR2	Q8IWV8	1755 aa		28.28	■■■□□ 2.12
TMC6-213	ENST00000589933	KCP	Q6ZWJ8	1503 aa		28.28	■■■□□ 2.12
TMC6-213	ENST00000589933	STARD3NL	O95772	234 aa		28.27	■■■□□ 2.12
TMC6-213	ENST00000589933	USPL1	Q5W0Q7	1092 aa		28.27	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms