RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 CICQ96RK0 1608 aaPredicted RBP25.5■■□□□ 1.67
CCDC43-204ENST00000588687 TMOD3Q9NYL9 352 aa25.5■■□□□ 1.67
CCDC43-204ENST00000588687 IFNL2Q8IZJ0 200 aa25.49■■□□□ 1.67
CCDC43-204ENST00000588687 ATG3Q9NT62 314 aa25.48■■□□□ 1.67
CCDC43-204ENST00000588687 KDM6AO15550 1401 aaPredicted RBP25.46■■□□□ 1.67
CCDC43-204ENST00000588687 SLC4A9Q96Q91 983 aa25.45■■□□□ 1.66
CCDC43-204ENST00000588687 C4AP0C0L4 1744 aa25.45■■□□□ 1.66
CCDC43-204ENST00000588687 GNPATO15228 680 aa25.44■■□□□ 1.66
CCDC43-204ENST00000588687 TNNT2P45379 298 aaPredicted RBP25.44■■□□□ 1.66
CCDC43-204ENST00000588687 ATP6V1AP38606 617 aa25.43■■□□□ 1.66
CCDC43-204ENST00000588687 PXDNLA1KZ92 1463 aa25.42■■□□□ 1.66
CCDC43-204ENST00000588687 MYH14Q7Z406 1995 aaKnown RBP25.42■■□□□ 1.66
CCDC43-204ENST00000588687 C10orf71Q711Q0 1435 aa25.39■■□□□ 1.66
CCDC43-204ENST00000588687 N4BP2Q86UW6 1770 aaPredicted RBP25.39■■□□□ 1.66
CCDC43-204ENST00000588687 BRCA1P38398 1863 aaKnown RBP25.39■■□□□ 1.66
CCDC43-204ENST00000588687 POLR3GLQ9BT43 218 aa25.39■■□□□ 1.66
CCDC43-204ENST00000588687 TJP1Q07157 1748 aa25.38■■□□□ 1.65
CCDC43-204ENST00000588687 ERVV-2B6SEH9 535 aa25.38■■□□□ 1.65
CCDC43-204ENST00000588687 HSPA5P11021 654 aaKnown RBP25.38■■□□□ 1.65
CCDC43-204ENST00000588687 PANK3Q9H999 370 aa25.38■■□□□ 1.65
CCDC43-204ENST00000588687 DCAF5Q96JK2 942 aa25.37■■□□□ 1.65
CCDC43-204ENST00000588687 WWC3Q9ULE0 1092 aa25.37■■□□□ 1.65
CCDC43-204ENST00000588687 MMP10P09238 476 aa25.36■■□□□ 1.65
CCDC43-204ENST00000588687 EIF4G2P78344 907 aaKnown RBP eCLIP25.36■■□□□ 1.65
CCDC43-204ENST00000588687 CNTNAP4Q9C0A0 1308 aa25.36■■□□□ 1.65
CCDC43-204ENST00000588687 AEBP1Q8IUX7 1158 aa25.35■■□□□ 1.65
CCDC43-204ENST00000588687 SCN11AQ9UI33 1791 aa25.35■■□□□ 1.65
CCDC43-204ENST00000588687 ADAMTS7Q9UKP4 1686 aa25.35■■□□□ 1.65
CCDC43-204ENST00000588687 HSP90AB1P08238 724 aaKnown RBP25.34■■□□□ 1.65
CCDC43-204ENST00000588687 RC3H1Q5TC82 1133 aaKnown RBP25.33■■□□□ 1.65
CCDC43-204ENST00000588687 ZNF530Q6P9A1 599 aaPredicted RBP25.32■■□□□ 1.64
CCDC43-204ENST00000588687 GPBP1L1Q9HC44 474 aaPredicted RBP25.32■■□□□ 1.64
CCDC43-204ENST00000588687 RTCBQ9Y3I0 505 aaKnown RBP25.32■■□□□ 1.64
CCDC43-204ENST00000588687 ADRA2BP18089 450 aa25.31■■□□□ 1.64
CCDC43-204ENST00000588687 PLEKHO1Q53GL0 409 aaPredicted RBP25.31■■□□□ 1.64
CCDC43-204ENST00000588687 PCGF6Q9BYE7 350 aa25.31■■□□□ 1.64
CCDC43-204ENST00000588687 GYS1P13807 737 aa25.3■■□□□ 1.64
CCDC43-204ENST00000588687 AMOTQ4VCS5 1084 aa25.3■■□□□ 1.64
CCDC43-204ENST00000588687 ARHGEF1Q92888 912 aaKnown RBP25.3■■□□□ 1.64
CCDC43-204ENST00000588687 RBM42Q9BTD8 480 aaKnown RBP25.3■■□□□ 1.64
CCDC43-204ENST00000588687 TRAPPC3LQ5T215 181 aa25.29■■□□□ 1.64
CCDC43-204ENST00000588687 MRC1P22897 1456 aa25.28■■□□□ 1.64
CCDC43-204ENST00000588687 RPS6KA4O75676 772 aa25.28■■□□□ 1.64
CCDC43-204ENST00000588687 NLGN1Q8N2Q7 840 aa25.27■■□□□ 1.64
CCDC43-204ENST00000588687 ZNF526Q8TF50 670 aaPredicted RBP25.27■■□□□ 1.64
CCDC43-204ENST00000588687 VIRMAQ69YN4 1812 aaKnown RBP25.27■■□□□ 1.64
CCDC43-204ENST00000588687 ARFGEF1Q9Y6D6 1849 aa25.27■■□□□ 1.64
CCDC43-204ENST00000588687 CABP4P57796 275 aa25.26■■□□□ 1.63
CCDC43-204ENST00000588687 TGFB2P61812 414 aa25.26■■□□□ 1.63
CCDC43-204ENST00000588687 IL13P35225 146 aa25.25■■□□□ 1.63
CCDC43-204ENST00000588687 MORC1Q86VD1 984 aa25.25■■□□□ 1.63
CCDC43-204ENST00000588687 KIF3CO14782 793 aa25.24■■□□□ 1.63
CCDC43-204ENST00000588687 MTHFSP49914 203 aa25.24■■□□□ 1.63
CCDC43-204ENST00000588687 AMER1Q5JTC6 1135 aaPredicted RBP25.23■■□□□ 1.63
CCDC43-204ENST00000588687 SULT6B1Q6IMI4 303 aa25.23■■□□□ 1.63
CCDC43-204ENST00000588687 A0A0G2JLW4 131 aa25.22■■□□□ 1.63
CCDC43-204ENST00000588687 PTCD1O75127 700 aaKnown RBP25.22■■□□□ 1.63
CCDC43-204ENST00000588687 CRKLP46109 303 aaKnown RBP25.22■■□□□ 1.63
CCDC43-204ENST00000588687 C1orf141Q5JVX7 400 aa25.22■■□□□ 1.63
CCDC43-204ENST00000588687 NFATC2IPQ8NCF5 419 aa25.22■■□□□ 1.63
CCDC43-204ENST00000588687 USP42Q9H9J4 1324 aaKnown RBP25.21■■□□□ 1.63
CCDC43-204ENST00000588687 RFC4P35249 363 aa25.21■■□□□ 1.63
CCDC43-204ENST00000588687 KCPQ6ZWJ8 1503 aa25.21■■□□□ 1.63
CCDC43-204ENST00000588687 DPEP1P16444 411 aa25.2■■□□□ 1.62
CCDC43-204ENST00000588687 HSPA6P17066 643 aa25.2■■□□□ 1.62
CCDC43-204ENST00000588687 KCNA3P22001 575 aa25.2■■□□□ 1.62
CCDC43-204ENST00000588687 CCDC87Q9NVE4 849 aa25.19■■□□□ 1.62
CCDC43-204ENST00000588687 SRP68Q9UHB9 627 aaKnown RBP25.19■■□□□ 1.62
CCDC43-204ENST00000588687 BCS1LQ9Y276 419 aa25.19■■□□□ 1.62
CCDC43-204ENST00000588687 UBR2Q8IWV8 1755 aa25.18■■□□□ 1.62
CCDC43-204ENST00000588687 DDR1Q08345 913 aa25.18■■□□□ 1.62
CCDC43-204ENST00000588687 KNSTRNQ9Y448 316 aa25.18■■□□□ 1.62
CCDC43-204ENST00000588687 INTS5Q6P9B9 1019 aaKnown RBP25.17■■□□□ 1.62
CCDC43-204ENST00000588687 FKBP8Q14318 412 aa25.16■■□□□ 1.62
CCDC43-204ENST00000588687 NRXN2Q9P2S2 1712 aa25.16■■□□□ 1.62
CCDC43-204ENST00000588687 PARP3Q9Y6F1 533 aa25.16■■□□□ 1.62
CCDC43-204ENST00000588687 KIF7Q2M1P5 1343 aa25.15■■□□□ 1.62
CCDC43-204ENST00000588687 AKAP4Q5JQC9 854 aa25.15■■□□□ 1.62
CCDC43-204ENST00000588687 SLC52A2Q9HAB3 445 aa25.14■■□□□ 1.62
CCDC43-204ENST00000588687 COL3A1P02461 1466 aaPredicted RBP25.14■■□□□ 1.61
CCDC43-204ENST00000588687 AFDNP55196 1824 aaKnown RBP25.14■■□□□ 1.61
CCDC43-204ENST00000588687 LGR6Q9HBX8 967 aa25.12■■□□□ 1.61
CCDC43-204ENST00000588687 DLEC1Q9Y238 1755 aa25.12■■□□□ 1.61
CCDC43-204ENST00000588687 SOS1Q07889 1333 aaPredicted RBP25.12■■□□□ 1.61
CCDC43-204ENST00000588687 FCHSD2O94868 740 aa25.11■■□□□ 1.61
CCDC43-204ENST00000588687 DNAJC10Q8IXB1 793 aa25.11■■□□□ 1.61
CCDC43-204ENST00000588687 POLRMTO00411 1230 aaKnown RBP25.1■■□□□ 1.61
CCDC43-204ENST00000588687 SBF1O95248 1867 aa25.09■■□□□ 1.61
CCDC43-204ENST00000588687 PER1O15534 1290 aaPredicted RBP25.09■■□□□ 1.61
CCDC43-204ENST00000588687 RNMTO43148 476 aaKnown RBP25.09■■□□□ 1.61
CCDC43-204ENST00000588687 TM4SF1P30408 202 aa25.09■■□□□ 1.61
CCDC43-204ENST00000588687 ARHGAP27Q6ZUM4 889 aa25.09■■□□□ 1.61
CCDC43-204ENST00000588687 SIPA1L3O60292 1781 aaPredicted RBP25.08■■□□□ 1.61
CCDC43-204ENST00000588687 CYP19A1P11511 503 aaPredicted RBP25.08■■□□□ 1.61
CCDC43-204ENST00000588687 HMOX1P09601 288 aa25.07■■□□□ 1.6
CCDC43-204ENST00000588687 SLC39A6Q13433 755 aa25.07■■□□□ 1.6
CCDC43-204ENST00000588687 CCER1Q8TC90 406 aaPredicted RBP25.07■■□□□ 1.6
CCDC43-204ENST00000588687 NMRK2Q9NPI5 230 aa25.07■■□□□ 1.6
CCDC43-204ENST00000588687 COL15A1P39059 1388 aa25.06■■□□□ 1.6
CCDC43-204ENST00000588687 PIM2Q9P1W9 311 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms