RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 RTF1Q92541 710 aaKnown RBP14.48□□□□□ -0.09
CLIP3-203ENST00000586457 PTCD1O75127 700 aaKnown RBP14.47□□□□□ -0.09
CLIP3-203ENST00000586457 PDGFDQ9GZP0 370 aaPredicted RBP14.47□□□□□ -0.09
CLIP3-203ENST00000586457 ITGB4P16144 1822 aa14.47□□□□□ -0.09
CLIP3-203ENST00000586457 RNMTO43148 476 aaKnown RBP14.46□□□□□ -0.09
CLIP3-203ENST00000586457 LGR6Q9HBX8 967 aa14.46□□□□□ -0.09
CLIP3-203ENST00000586457 LRP5O75197 1615 aa14.45□□□□□ -0.1
CLIP3-203ENST00000586457 TTC5Q8N0Z6 440 aa14.45□□□□□ -0.1
CLIP3-203ENST00000586457 SLC52A2Q9HAB3 445 aa14.45□□□□□ -0.1
CLIP3-203ENST00000586457 MAPK8IP3Q9UPT6 1336 aa14.44□□□□□ -0.1
CLIP3-203ENST00000586457 LY75O60449 1722 aa14.44□□□□□ -0.1
CLIP3-203ENST00000586457 PHF14O94880 888 aa14.44□□□□□ -0.1
CLIP3-203ENST00000586457 KLHL34Q8N239 644 aa14.44□□□□□ -0.1
CLIP3-203ENST00000586457 RSPH6AQ9H0K4 717 aa14.44□□□□□ -0.1
CLIP3-203ENST00000586457 COL3A1P02461 1466 aaPredicted RBP14.44□□□□□ -0.1
CLIP3-203ENST00000586457 TOGARAM1Q9Y4F4 1720 aa14.44□□□□□ -0.1
CLIP3-203ENST00000586457 PNPLA7Q6ZV29 1317 aa14.43□□□□□ -0.1
CLIP3-203ENST00000586457 MYBBP1AQ9BQG0 1328 aaKnown RBP14.43□□□□□ -0.1
CLIP3-203ENST00000586457 KDM6AO15550 1401 aaPredicted RBP14.43□□□□□ -0.1
CLIP3-203ENST00000586457 ZNF316A6NFI3 1004 aaPredicted RBP14.43□□□□□ -0.1
CLIP3-203ENST00000586457 GNPATO15228 680 aa14.43□□□□□ -0.1
CLIP3-203ENST00000586457 PHACTR3Q96KR7 559 aa14.43□□□□□ -0.1
CLIP3-203ENST00000586457 RTCBQ9Y3I0 505 aaKnown RBP14.43□□□□□ -0.1
CLIP3-203ENST00000586457 MAP3K5Q99683 1374 aa14.43□□□□□ -0.1
CLIP3-203ENST00000586457 WDR43Q15061 677 aaKnown RBP eCLIP14.42□□□□□ -0.1
CLIP3-203ENST00000586457 TRAPPC3LQ5T215 181 aa14.42□□□□□ -0.1
CLIP3-203ENST00000586457 COL23A1Q86Y22 540 aaPredicted RBP14.42□□□□□ -0.1
CLIP3-203ENST00000586457 ARXQ96QS3 562 aa14.42□□□□□ -0.1
CLIP3-203ENST00000586457 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.41□□□□□ -0.1
CLIP3-203ENST00000586457 ITPK1Q13572 414 aa14.41□□□□□ -0.1
CLIP3-203ENST00000586457 LINC00116Q8NCU8 138 aa14.41□□□□□ -0.1
CLIP3-203ENST00000586457 SRCAPQ6ZRS2 3230 aa14.4□□□□□ -0.1
CLIP3-203ENST00000586457 SSFA2P28290 1259 aa14.4□□□□□ -0.1
CLIP3-203ENST00000586457 SLC39A6Q13433 755 aa14.4□□□□□ -0.1
CLIP3-203ENST00000586457 NPM2Q86SE8 214 aaKnown RBP14.4□□□□□ -0.1
CLIP3-203ENST00000586457 PAPPAQ13219 1627 aa14.4□□□□□ -0.1
CLIP3-203ENST00000586457 C5P01031 1676 aa14.39□□□□□ -0.11
CLIP3-203ENST00000586457 BTBD11A6QL63 1104 aa14.39□□□□□ -0.11
CLIP3-203ENST00000586457 RFC4P35249 363 aa14.39□□□□□ -0.11
CLIP3-203ENST00000586457 PTGER2P43116 358 aa14.39□□□□□ -0.11
CLIP3-203ENST00000586457 RC3H1Q5TC82 1133 aaKnown RBP14.39□□□□□ -0.11
CLIP3-203ENST00000586457 CASZ1Q86V15 1759 aa14.38□□□□□ -0.11
CLIP3-203ENST00000586457 HTATSF1O43719 755 aaKnown RBP14.38□□□□□ -0.11
CLIP3-203ENST00000586457 MSL1Q68DK7 614 aa14.38□□□□□ -0.11
CLIP3-203ENST00000586457 IL17REQ8NFR9 667 aa14.38□□□□□ -0.11
CLIP3-203ENST00000586457 SCN11AQ9UI33 1791 aa14.37□□□□□ -0.11
CLIP3-203ENST00000586457 STARD3NLO95772 234 aa14.37□□□□□ -0.11
CLIP3-203ENST00000586457 MCM10Q7L590 875 aa14.37□□□□□ -0.11
CLIP3-203ENST00000586457 TEX13AQ9BXU3 409 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-203ENST00000586457 FHDC1Q9C0D6 1143 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-203ENST00000586457 PRKRIP1Q9H875 184 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-203ENST00000586457 C4BP0C0L5 1744 aa14.37□□□□□ -0.11
CLIP3-203ENST00000586457 RPS6KA4O75676 772 aa14.36□□□□□ -0.11
CLIP3-203ENST00000586457 ADRA2BP18089 450 aa14.36□□□□□ -0.11
CLIP3-203ENST00000586457 FMNL2Q96PY5 1086 aa14.36□□□□□ -0.11
CLIP3-203ENST00000586457 ANP32CO43423 234 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 CRKLP46109 303 aaKnown RBP14.35□□□□□ -0.11
CLIP3-203ENST00000586457 NFE2L2Q16236 605 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 ZNF790Q6PG37 636 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 DNAJC10Q8IXB1 793 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 VSIG10Q8N0Z9 540 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 SLC4A9Q96Q91 983 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 CNTNAP4Q9C0A0 1308 aa14.35□□□□□ -0.11
CLIP3-203ENST00000586457 TAF1LQ8IZX4 1826 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 ZPR1O75312 459 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 TAF7Q15545 349 aaPredicted RBP14.34□□□□□ -0.11
CLIP3-203ENST00000586457 SMIM5Q71RC9 77 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 NLGN1Q8N2Q7 840 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 SYT17Q9BSW7 474 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 CCDC87Q9NVE4 849 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 QSER1Q2KHR3 1735 aa14.34□□□□□ -0.11
CLIP3-203ENST00000586457 RIPK4P57078 832 aa14.33□□□□□ -0.12
CLIP3-203ENST00000586457 LMOD3Q0VAK6 560 aa14.33□□□□□ -0.12
CLIP3-203ENST00000586457 DCTN1Q14203 1278 aa14.33□□□□□ -0.12
CLIP3-203ENST00000586457 PNISRQ8TF01 805 aaKnown RBP14.33□□□□□ -0.12
CLIP3-203ENST00000586457 ARHGEF1Q92888 912 aaKnown RBP14.33□□□□□ -0.12
CLIP3-203ENST00000586457 NEUROD2Q15784 382 aa14.32□□□□□ -0.12
CLIP3-203ENST00000586457 PELP1Q8IZL8 1130 aaKnown RBP14.32□□□□□ -0.12
CLIP3-203ENST00000586457 SGIP1Q9BQI5 828 aa14.32□□□□□ -0.12
CLIP3-203ENST00000586457 ZNF330Q9Y3S2 320 aaPredicted RBP14.32□□□□□ -0.12
CLIP3-203ENST00000586457 CYP19A1P11511 503 aaPredicted RBP14.31□□□□□ -0.12
CLIP3-203ENST00000586457 CANXP27824 592 aaKnown RBP14.31□□□□□ -0.12
CLIP3-203ENST00000586457 GPR162Q16538 588 aa14.31□□□□□ -0.12
CLIP3-203ENST00000586457 CCDC146Q8IYE0 955 aa14.31□□□□□ -0.12
CLIP3-203ENST00000586457 ZNF496Q96IT1 587 aaPredicted RBP14.31□□□□□ -0.12
CLIP3-203ENST00000586457 PLEKHF1Q96S99 279 aa14.31□□□□□ -0.12
CLIP3-203ENST00000586457 A0A087WZG4 1122 aa14.3□□□□□ -0.12
CLIP3-203ENST00000586457 RUNDC1Q96C34 613 aa14.3□□□□□ -0.12
CLIP3-203ENST00000586457 PARP3Q9Y6F1 533 aa14.3□□□□□ -0.12
CLIP3-203ENST00000586457 CEMIPQ8WUJ3 1361 aa14.3□□□□□ -0.12
CLIP3-203ENST00000586457 MRC1P22897 1456 aa14.3□□□□□ -0.12
CLIP3-203ENST00000586457 ZNF831Q5JPB2 1677 aa14.3□□□□□ -0.12
CLIP3-203ENST00000586457 TUBGCP6Q96RT7 1819 aa14.29□□□□□ -0.12
CLIP3-203ENST00000586457 SNRPA1P09661 255 aaKnown RBP14.29□□□□□ -0.12
CLIP3-203ENST00000586457 INTS5Q6P9B9 1019 aaKnown RBP14.29□□□□□ -0.12
CLIP3-203ENST00000586457 AMIGO3Q86WK7 504 aa14.29□□□□□ -0.12
CLIP3-203ENST00000586457 ADAMTS8Q9UP79 889 aa14.29□□□□□ -0.12
CLIP3-203ENST00000586457 HEG1Q9ULI3 1381 aa14.29□□□□□ -0.12
CLIP3-203ENST00000586457 VIRMAQ69YN4 1812 aaKnown RBP14.29□□□□□ -0.12
CLIP3-203ENST00000586457 MMP10P09238 476 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms