RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 PCGF6Q9BYE7 350 aa16.32■□□□□ 0.2
LIG3-209ENST00000586435 ATG3Q9NT62 314 aa16.32■□□□□ 0.2
LIG3-209ENST00000586435 CICQ96RK0 1608 aaPredicted RBP16.31■□□□□ 0.2
LIG3-209ENST00000586435 ERVV-2B6SEH9 535 aa16.31■□□□□ 0.2
LIG3-209ENST00000586435 HSP90AB1P08238 724 aaKnown RBP16.31■□□□□ 0.2
LIG3-209ENST00000586435 HSPA5P11021 654 aaKnown RBP16.31■□□□□ 0.2
LIG3-209ENST00000586435 PANK3Q9H999 370 aa16.31■□□□□ 0.2
LIG3-209ENST00000586435 KDM6AO15550 1401 aaPredicted RBP16.3■□□□□ 0.2
LIG3-209ENST00000586435 ADCY9O60503 1353 aa16.3■□□□□ 0.2
LIG3-209ENST00000586435 SENP3-EIF4A1A0A087X0R7 540 aa16.3■□□□□ 0.2
LIG3-209ENST00000586435 GNPATO15228 680 aa16.3■□□□□ 0.2
LIG3-209ENST00000586435 DCAF5Q96JK2 942 aa16.3■□□□□ 0.2
LIG3-209ENST00000586435 KIAA1551Q9HCM1 1747 aa16.3■□□□□ 0.2
LIG3-209ENST00000586435 ATP10DQ9P241 1426 aa16.29■□□□□ 0.2
LIG3-209ENST00000586435 C4AP0C0L4 1744 aa16.29■□□□□ 0.2
LIG3-209ENST00000586435 AMOTQ4VCS5 1084 aa16.29■□□□□ 0.2
LIG3-209ENST00000586435 PLEKHO1Q53GL0 409 aaPredicted RBP16.29■□□□□ 0.2
LIG3-209ENST00000586435 SMIM5Q71RC9 77 aa16.29■□□□□ 0.2
LIG3-209ENST00000586435 MYH14Q7Z406 1995 aaKnown RBP16.29■□□□□ 0.2
LIG3-209ENST00000586435 SCN11AQ9UI33 1791 aa16.28■□□□□ 0.2
LIG3-209ENST00000586435 CNTNAP4Q9C0A0 1308 aa16.27■□□□□ 0.2
LIG3-209ENST00000586435 ADRA2BP18089 450 aa16.27■□□□□ 0.2
LIG3-209ENST00000586435 RC3H1Q5TC82 1133 aaKnown RBP16.26■□□□□ 0.19
LIG3-209ENST00000586435 ZNF530Q6P9A1 599 aaPredicted RBP16.26■□□□□ 0.19
LIG3-209ENST00000586435 SLC4A9Q96Q91 983 aa16.26■□□□□ 0.19
LIG3-209ENST00000586435 RTCBQ9Y3I0 505 aaKnown RBP16.26■□□□□ 0.19
LIG3-209ENST00000586435 BRCA1P38398 1863 aaKnown RBP16.26■□□□□ 0.19
LIG3-209ENST00000586435 VIRMAQ69YN4 1812 aaKnown RBP16.26■□□□□ 0.19
LIG3-209ENST00000586435 TJP1Q07157 1748 aa16.25■□□□□ 0.19
LIG3-209ENST00000586435 MORC1Q86VD1 984 aa16.25■□□□□ 0.19
LIG3-209ENST00000586435 N4BP2Q86UW6 1770 aaPredicted RBP16.25■□□□□ 0.19
LIG3-209ENST00000586435 PXDNLA1KZ92 1463 aa16.24■□□□□ 0.19
LIG3-209ENST00000586435 MMP10P09238 476 aa16.24■□□□□ 0.19
LIG3-209ENST00000586435 TRAPPC3LQ5T215 181 aa16.24■□□□□ 0.19
LIG3-209ENST00000586435 C10orf71Q711Q0 1435 aa16.24■□□□□ 0.19
LIG3-209ENST00000586435 CABP4P57796 275 aa16.23■□□□□ 0.19
LIG3-209ENST00000586435 C1orf141Q5JVX7 400 aa16.23■□□□□ 0.19
LIG3-209ENST00000586435 AEBP1Q8IUX7 1158 aa16.23■□□□□ 0.19
LIG3-209ENST00000586435 NLGN1Q8N2Q7 840 aa16.23■□□□□ 0.19
LIG3-209ENST00000586435 RBM42Q9BTD8 480 aaKnown RBP16.23■□□□□ 0.19
LIG3-209ENST00000586435 KNSTRNQ9Y448 316 aa16.23■□□□□ 0.19
LIG3-209ENST00000586435 RPS6KA4O75676 772 aa16.22■□□□□ 0.19
LIG3-209ENST00000586435 MTHFSP49914 203 aa16.22■□□□□ 0.19
LIG3-209ENST00000586435 IL13P35225 146 aa16.21■□□□□ 0.19
LIG3-209ENST00000586435 TGFB2P61812 414 aa16.21■□□□□ 0.19
LIG3-209ENST00000586435 SULT6B1Q6IMI4 303 aa16.21■□□□□ 0.19
LIG3-209ENST00000586435 ARHGEF1Q92888 912 aaKnown RBP16.21■□□□□ 0.19
LIG3-209ENST00000586435 GPBP1L1Q9HC44 474 aaPredicted RBP16.21■□□□□ 0.19
LIG3-209ENST00000586435 ARFGEF1Q9Y6D6 1849 aa16.21■□□□□ 0.19
LIG3-209ENST00000586435 MRC1P22897 1456 aa16.21■□□□□ 0.19
LIG3-209ENST00000586435 ADAMTS7Q9UKP4 1686 aa16.21■□□□□ 0.18
LIG3-209ENST00000586435 GYS1P13807 737 aa16.2■□□□□ 0.18
LIG3-209ENST00000586435 AMER1Q5JTC6 1135 aaPredicted RBP16.2■□□□□ 0.18
LIG3-209ENST00000586435 RFC4P35249 363 aa16.19■□□□□ 0.18
LIG3-209ENST00000586435 CCER1Q8TC90 406 aaPredicted RBP16.19■□□□□ 0.18
LIG3-209ENST00000586435 NFATC2IPQ8NCF5 419 aa16.18■□□□□ 0.18
LIG3-209ENST00000586435 CCDC87Q9NVE4 849 aa16.18■□□□□ 0.18
LIG3-209ENST00000586435 WWC3Q9ULE0 1092 aa16.18■□□□□ 0.18
LIG3-209ENST00000586435 CRKLP46109 303 aaKnown RBP16.17■□□□□ 0.18
LIG3-209ENST00000586435 AKAP4Q5JQC9 854 aa16.17■□□□□ 0.18
LIG3-209ENST00000586435 PTCD1O75127 700 aaKnown RBP16.16■□□□□ 0.18
LIG3-209ENST00000586435 PARP3Q9Y6F1 533 aa16.16■□□□□ 0.18
LIG3-209ENST00000586435 KIF7Q2M1P5 1343 aa16.16■□□□□ 0.18
LIG3-209ENST00000586435 UBR2Q8IWV8 1755 aa16.15■□□□□ 0.18
LIG3-209ENST00000586435 USP42Q9H9J4 1324 aaKnown RBP16.15■□□□□ 0.18
LIG3-209ENST00000586435 SLC52A2Q9HAB3 445 aa16.14■□□□□ 0.17
LIG3-209ENST00000586435 KCPQ6ZWJ8 1503 aa16.14■□□□□ 0.17
LIG3-209ENST00000586435 A0A0G2JLW4 131 aa16.13■□□□□ 0.17
LIG3-209ENST00000586435 DPEP1P16444 411 aa16.13■□□□□ 0.17
LIG3-209ENST00000586435 ZNF526Q8TF50 670 aaPredicted RBP16.13■□□□□ 0.17
LIG3-209ENST00000586435 BCS1LQ9Y276 419 aa16.13■□□□□ 0.17
LIG3-209ENST00000586435 NRXN2Q9P2S2 1712 aa16.12■□□□□ 0.17
LIG3-209ENST00000586435 PER1O15534 1290 aaPredicted RBP16.12■□□□□ 0.17
LIG3-209ENST00000586435 INTS5Q6P9B9 1019 aaKnown RBP16.12■□□□□ 0.17
LIG3-209ENST00000586435 AFDNP55196 1824 aaKnown RBP16.12■□□□□ 0.17
LIG3-209ENST00000586435 KIF3CO14782 793 aa16.11■□□□□ 0.17
LIG3-209ENST00000586435 RNMTO43148 476 aaKnown RBP16.11■□□□□ 0.17
LIG3-209ENST00000586435 HSPA6P17066 643 aa16.11■□□□□ 0.17
LIG3-209ENST00000586435 FKBP8Q14318 412 aa16.11■□□□□ 0.17
LIG3-209ENST00000586435 SRP68Q9UHB9 627 aaKnown RBP16.11■□□□□ 0.17
LIG3-209ENST00000586435 CEP350Q5VT06 3117 aa16.11■□□□□ 0.17
LIG3-209ENST00000586435 NPC1L1Q9UHC9 1359 aa16.11■□□□□ 0.17
LIG3-209ENST00000586435 COL3A1P02461 1466 aaPredicted RBP16.1■□□□□ 0.17
LIG3-209ENST00000586435 FCHSD2O94868 740 aa16.1■□□□□ 0.17
LIG3-209ENST00000586435 KCNA3P22001 575 aa16.1■□□□□ 0.17
LIG3-209ENST00000586435 DDR1Q08345 913 aa16.1■□□□□ 0.17
LIG3-209ENST00000586435 DNAJC10Q8IXB1 793 aa16.1■□□□□ 0.17
LIG3-209ENST00000586435 LGR6Q9HBX8 967 aa16.1■□□□□ 0.17
LIG3-209ENST00000586435 SOS1Q07889 1333 aaPredicted RBP16.1■□□□□ 0.17
LIG3-209ENST00000586435 DLEC1Q9Y238 1755 aa16.1■□□□□ 0.17
LIG3-209ENST00000586435 SIPA1L3O60292 1781 aaPredicted RBP16.09■□□□□ 0.17
LIG3-209ENST00000586435 DIAPH1O60610 1272 aaKnown RBP16.09■□□□□ 0.17
LIG3-209ENST00000586435 HMOX1P09601 288 aa16.09■□□□□ 0.17
LIG3-209ENST00000586435 PIM2Q9P1W9 311 aa16.09■□□□□ 0.17
LIG3-209ENST00000586435 SBF1O95248 1867 aa16.09■□□□□ 0.17
LIG3-209ENST00000586435 POLRMTO00411 1230 aaKnown RBP16.08■□□□□ 0.16
LIG3-209ENST00000586435 CYP19A1P11511 503 aaPredicted RBP16.08■□□□□ 0.16
LIG3-209ENST00000586435 TM4SF1P30408 202 aa16.08■□□□□ 0.16
LIG3-209ENST00000586435 MTHFSDQ2M296 383 aaKnown RBP16.08■□□□□ 0.16
LIG3-209ENST00000586435 VSIG10Q8N0Z9 540 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms