RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 IP6K1Q92551 441 aa10.93□□□□□ -0.66
SMAD4-204ENST00000586253 AXIN2Q9Y2T1 843 aa10.93□□□□□ -0.66
SMAD4-204ENST00000586253 CRB1P82279 1406 aa10.92□□□□□ -0.66
SMAD4-204ENST00000586253 SPATA31A1Q5TZJ5 1347 aa10.92□□□□□ -0.66
SMAD4-204ENST00000586253 WDR17Q8IZU2 1322 aa10.92□□□□□ -0.66
SMAD4-204ENST00000586253 AMPHP49418 695 aa10.92□□□□□ -0.66
SMAD4-204ENST00000586253 RRS1Q15050 365 aaKnown RBP10.92□□□□□ -0.66
SMAD4-204ENST00000586253 MORC1Q86VD1 984 aa10.92□□□□□ -0.66
SMAD4-204ENST00000586253 STRN4Q9NRL3 753 aa10.92□□□□□ -0.66
SMAD4-204ENST00000586253 MAP2P11137 1827 aaKnown RBP10.92□□□□□ -0.66
SMAD4-204ENST00000586253 SMG6Q86US8 1419 aaKnown RBP10.92□□□□□ -0.66
SMAD4-204ENST00000586253 FAM208AQ9UK61 1670 aaKnown RBP10.92□□□□□ -0.66
SMAD4-204ENST00000586253 FLT4P35916 1363 aa10.91□□□□□ -0.66
SMAD4-204ENST00000586253 ONECUT3O60422 494 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-204ENST00000586253 PPP1R37O75864 691 aa10.91□□□□□ -0.66
SMAD4-204ENST00000586253 FBLN1P23142 703 aa10.91□□□□□ -0.66
SMAD4-204ENST00000586253 HOXC9P31274 260 aa10.91□□□□□ -0.66
SMAD4-204ENST00000586253 LARP1Q6PKG0 1096 aaKnown RBP10.91□□□□□ -0.66
SMAD4-204ENST00000586253 CFAP44Q96MT7 982 aa10.91□□□□□ -0.66
SMAD4-204ENST00000586253 THRAP3Q9Y2W1 955 aaKnown RBP10.91□□□□□ -0.66
SMAD4-204ENST00000586253 PEAK1Q9H792 1746 aa10.91□□□□□ -0.66
SMAD4-204ENST00000586253 INSRP06213 1382 aa10.9□□□□□ -0.66
SMAD4-204ENST00000586253 SLC34A2O95436 690 aa10.9□□□□□ -0.66
SMAD4-204ENST00000586253 BARGINQ6ZT62 677 aa10.9□□□□□ -0.66
SMAD4-204ENST00000586253 ILDR2Q71H61 639 aa10.9□□□□□ -0.66
SMAD4-204ENST00000586253 POLKQ9UBT6 870 aa10.9□□□□□ -0.66
SMAD4-204ENST00000586253 CCDC9Q9Y3X0 531 aaKnown RBP10.9□□□□□ -0.66
SMAD4-204ENST00000586253 RGS12O14924 1447 aa10.9□□□□□ -0.66
SMAD4-204ENST00000586253 CSB-PGBD3P0DP91 1061 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 CC2D1BQ5T0F9 858 aaKnown RBP10.89□□□□□ -0.67
SMAD4-204ENST00000586253 POTEEQ6S8J3 1075 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 TOM1L2Q6ZVM7 507 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 TCP11L2Q8N4U5 519 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 ANKRD24Q8TF21 1146 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 RNF166Q96A37 237 aaPredicted RBP10.89□□□□□ -0.67
SMAD4-204ENST00000586253 CARD10Q9BWT7 1032 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 EMILIN1Q9Y6C2 1016 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 THSD7AQ9UPZ6 1657 aa10.89□□□□□ -0.67
SMAD4-204ENST00000586253 TNNT2P45379 298 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-204ENST00000586253 WNK3Q9BYP7 1800 aa10.87□□□□□ -0.67
SMAD4-204ENST00000586253 DDX10Q13206 875 aaKnown RBP10.87□□□□□ -0.67
SMAD4-204ENST00000586253 HSP90AB2PQ58FF8 381 aa10.87□□□□□ -0.67
SMAD4-204ENST00000586253 PPM1GO15355 546 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-204ENST00000586253 FAM98CQ17RN3 349 aaKnown RBP10.86□□□□□ -0.67
SMAD4-204ENST00000586253 CDCA7Q9BWT1 371 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-204ENST00000586253 USP35Q9P2H5 1018 aa10.86□□□□□ -0.67
SMAD4-204ENST00000586253 PARP4Q9UKK3 1724 aaKnown RBP10.86□□□□□ -0.67
SMAD4-204ENST00000586253 DISP2A7MBM2 1401 aa10.85□□□□□ -0.67
SMAD4-204ENST00000586253 SEPT12Q8IYM1 358 aa10.85□□□□□ -0.67
SMAD4-204ENST00000586253 SPRYD3Q8NCJ5 442 aa10.85□□□□□ -0.67
SMAD4-204ENST00000586253 NLRP2Q9NX02 1062 aa10.85□□□□□ -0.67
SMAD4-204ENST00000586253 BRWD3Q6RI45 1802 aa10.84□□□□□ -0.67
SMAD4-204ENST00000586253 NUDT7P0C024 238 aa10.84□□□□□ -0.67
SMAD4-204ENST00000586253 LTV1Q96GA3 475 aaPredicted RBP10.84□□□□□ -0.67
SMAD4-204ENST00000586253 PCDHGA4Q9Y5G9 962 aa10.84□□□□□ -0.67
SMAD4-204ENST00000586253 PARD3Q8TEW0 1356 aa10.84□□□□□ -0.67
SMAD4-204ENST00000586253 NCAPD2Q15021 1401 aa10.84□□□□□ -0.67
SMAD4-204ENST00000586253 RGPD2P0DJD1 1756 aa10.83□□□□□ -0.68
SMAD4-204ENST00000586253 MTHFSP49914 203 aa10.83□□□□□ -0.68
SMAD4-204ENST00000586253 LRRC37A3O60309 1634 aa10.83□□□□□ -0.68
SMAD4-204ENST00000586253 PLEKHG2Q9H7P9 1386 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 A0A0G2JS52 829 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 IL2RBP14784 551 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 MYT1Q01538 1121 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 EIF4A2Q14240 407 aaKnown RBP10.82□□□□□ -0.68
SMAD4-204ENST00000586253 RALBP1Q15311 655 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 KRT27Q7Z3Y8 459 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 LHX6Q9UPM6 363 aa10.82□□□□□ -0.68
SMAD4-204ENST00000586253 LSM11P83369 360 aaKnown RBP eCLIP10.81□□□□□ -0.68
SMAD4-204ENST00000586253 NBPF6Q5VWK0 638 aa10.81□□□□□ -0.68
SMAD4-204ENST00000586253 NBPF4Q96M43 638 aa10.81□□□□□ -0.68
SMAD4-204ENST00000586253 RGPD1P0DJD0 1748 aa10.81□□□□□ -0.68
SMAD4-204ENST00000586253 COL3A1P02461 1466 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-204ENST00000586253 PPP2R1AP30153 589 aa10.8□□□□□ -0.68
SMAD4-204ENST00000586253 PDE3BQ13370 1112 aa10.8□□□□□ -0.68
SMAD4-204ENST00000586253 CNGB1Q14028 1251 aaPredicted RBP10.8□□□□□ -0.68
SMAD4-204ENST00000586253 DDB1Q16531 1140 aa10.8□□□□□ -0.68
SMAD4-204ENST00000586253 EYA1Q99502 592 aa10.8□□□□□ -0.68
SMAD4-204ENST00000586253 TNS2Q63HR2 1409 aa10.8□□□□□ -0.68
SMAD4-204ENST00000586253 IGSF1Q8N6C5 1336 aa10.8□□□□□ -0.68
SMAD4-204ENST00000586253 OVOS2A0A0G2JMS6 1433 aa10.79□□□□□ -0.68
SMAD4-204ENST00000586253 SOCS7O14512 581 aa10.79□□□□□ -0.68
SMAD4-204ENST00000586253 IL13P35225 146 aa10.79□□□□□ -0.68
SMAD4-204ENST00000586253 PTGER2P43116 358 aa10.79□□□□□ -0.68
SMAD4-204ENST00000586253 CFAP53Q96M91 514 aa10.79□□□□□ -0.68
SMAD4-204ENST00000586253 MEGF6O75095 1541 aa10.79□□□□□ -0.68
SMAD4-204ENST00000586253 BCL9O00512 1426 aa10.78□□□□□ -0.68
SMAD4-204ENST00000586253 EXOC5O00471 708 aa10.78□□□□□ -0.68
SMAD4-204ENST00000586253 DIAPH1O60610 1272 aaKnown RBP10.78□□□□□ -0.68
SMAD4-204ENST00000586253 PRKCSHP14314 528 aaPredicted RBP10.78□□□□□ -0.68
SMAD4-204ENST00000586253 ANKRD13DQ6ZTN6 518 aa10.78□□□□□ -0.68
SMAD4-204ENST00000586253 RAPGEF4Q8WZA2 1011 aa10.78□□□□□ -0.68
SMAD4-204ENST00000586253 KDRP35968 1356 aa10.77□□□□□ -0.68
SMAD4-204ENST00000586253 EP400Q96L91 3159 aa10.77□□□□□ -0.69
SMAD4-204ENST00000586253 TATP17735 454 aaPredicted RBP10.77□□□□□ -0.69
SMAD4-204ENST00000586253 FAM196AQ6ZSG2 479 aa10.77□□□□□ -0.69
SMAD4-204ENST00000586253 USHBP1Q8N6Y0 703 aa10.77□□□□□ -0.69
SMAD4-204ENST00000586253 PKD1L3Q7Z443 1732 aa10.77□□□□□ -0.69
SMAD4-204ENST00000586253 MYBBP1AQ9BQG0 1328 aaKnown RBP10.77□□□□□ -0.69
SMAD4-204ENST00000586253 SHANK3Q9BYB0 1731 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms