RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SIPA1L3O60292 1781 aaPredicted RBP17.88■□□□□ 0.45
LIG3-205ENST00000585941 CCT4P50991 539 aaKnown RBP17.87■□□□□ 0.45
LIG3-205ENST00000585941 BTBD11A6QL63 1104 aa17.87■□□□□ 0.45
LIG3-205ENST00000585941 EIF4A1P60842 406 aaKnown RBP17.87■□□□□ 0.45
LIG3-205ENST00000585941 MPRIPQ6WCQ1 1025 aa17.87■□□□□ 0.45
LIG3-205ENST00000585941 GCC1Q96CN9 775 aa17.87■□□□□ 0.45
LIG3-205ENST00000585941 SCN11AQ9UI33 1791 aa17.86■□□□□ 0.45
LIG3-205ENST00000585941 CHRNA2Q15822 529 aa17.86■□□□□ 0.45
LIG3-205ENST00000585941 PKD1L3Q7Z443 1732 aa17.86■□□□□ 0.45
LIG3-205ENST00000585941 PRDM11Q9NQV5 511 aa17.86■□□□□ 0.45
LIG3-205ENST00000585941 N4BP2Q86UW6 1770 aaPredicted RBP17.85■□□□□ 0.45
LIG3-205ENST00000585941 FLIIQ13045 1269 aa17.84■□□□□ 0.45
LIG3-205ENST00000585941 HDGFL1Q5TGJ6 251 aa17.84■□□□□ 0.45
LIG3-205ENST00000585941 PXDNLA1KZ92 1463 aa17.84■□□□□ 0.45
LIG3-205ENST00000585941 WDR17Q8IZU2 1322 aa17.84■□□□□ 0.45
LIG3-205ENST00000585941 PARP4Q9UKK3 1724 aaKnown RBP17.84■□□□□ 0.45
LIG3-205ENST00000585941 C8orf34Q49A92 452 aa17.83■□□□□ 0.45
LIG3-205ENST00000585941 IFNL2Q8IZJ0 200 aa17.83■□□□□ 0.45
LIG3-205ENST00000585941 MEGF6O75095 1541 aa17.83■□□□□ 0.45
LIG3-205ENST00000585941 HSP90AB1P08238 724 aaKnown RBP17.83■□□□□ 0.44
LIG3-205ENST00000585941 NUCB1Q02818 461 aa17.82■□□□□ 0.44
LIG3-205ENST00000585941 G2E3Q7L622 706 aa17.82■□□□□ 0.44
LIG3-205ENST00000585941 RPAP2Q8IXW5 612 aaPredicted RBP17.82■□□□□ 0.44
LIG3-205ENST00000585941 PHKG2P15735 406 aa17.81■□□□□ 0.44
LIG3-205ENST00000585941 FKBP5Q13451 457 aaPredicted RBP17.81■□□□□ 0.44
LIG3-205ENST00000585941 COL5A2P05997 1499 aaPredicted RBP17.81■□□□□ 0.44
LIG3-205ENST00000585941 HEG1Q9ULI3 1381 aa17.8■□□□□ 0.44
LIG3-205ENST00000585941 DCAF5Q96JK2 942 aa17.8■□□□□ 0.44
LIG3-205ENST00000585941 ANKRD44Q8N8A2 993 aa17.79■□□□□ 0.44
LIG3-205ENST00000585941 C1orf115Q9H7X2 142 aa17.79■□□□□ 0.44
LIG3-205ENST00000585941 MRC1P22897 1456 aa17.79■□□□□ 0.44
LIG3-205ENST00000585941 SLC4A10Q6U841 1118 aa17.78■□□□□ 0.44
LIG3-205ENST00000585941 CHD1LQ86WJ1 897 aa17.78■□□□□ 0.44
LIG3-205ENST00000585941 IPO9Q96P70 1041 aaKnown RBP17.78■□□□□ 0.44
LIG3-205ENST00000585941 SLC52A2Q9HAB3 445 aa17.78■□□□□ 0.44
LIG3-205ENST00000585941 AHDC1Q5TGY3 1603 aaPredicted RBP17.78■□□□□ 0.44
LIG3-205ENST00000585941 KDM6AO15550 1401 aaPredicted RBP17.78■□□□□ 0.44
LIG3-205ENST00000585941 GNAI3P08754 354 aa17.77■□□□□ 0.44
LIG3-205ENST00000585941 TOM1L2Q6ZVM7 507 aa17.77■□□□□ 0.44
LIG3-205ENST00000585941 SIRT2Q8IXJ6 389 aa17.77■□□□□ 0.44
LIG3-205ENST00000585941 CARD10Q9BWT7 1032 aa17.77■□□□□ 0.44
LIG3-205ENST00000585941 DBF4Q9UBU7 674 aaPredicted RBP17.77■□□□□ 0.44
LIG3-205ENST00000585941 ATP10DQ9P241 1426 aa17.77■□□□□ 0.44
LIG3-205ENST00000585941 NECTIN2Q92692 538 aa17.77■□□□□ 0.43
LIG3-205ENST00000585941 ROBO1Q9Y6N7 1651 aa17.76■□□□□ 0.43
LIG3-205ENST00000585941 F6X3S4 739 aa17.76■□□□□ 0.43
LIG3-205ENST00000585941 KCNQ3O43525 872 aa17.76■□□□□ 0.43
LIG3-205ENST00000585941 HMMRO75330 724 aa17.76■□□□□ 0.43
LIG3-205ENST00000585941 GIGYF1O75420 1035 aaPredicted RBP17.76■□□□□ 0.43
LIG3-205ENST00000585941 LTBP4Q8N2S1 1624 aa17.76■□□□□ 0.43
LIG3-205ENST00000585941 EIF2S2P20042 333 aaKnown RBP17.75■□□□□ 0.43
LIG3-205ENST00000585941 CEP85Q6P2H3 762 aa17.75■□□□□ 0.43
LIG3-205ENST00000585941 MEIS3Q99687 375 aa17.75■□□□□ 0.43
LIG3-205ENST00000585941 DCTPP1Q9H773 170 aa17.75■□□□□ 0.43
LIG3-205ENST00000585941 PCDH11XQ9BZA7 1347 aa17.75■□□□□ 0.43
LIG3-205ENST00000585941 PCDH11YQ9BZA8 1340 aa17.75■□□□□ 0.43
LIG3-205ENST00000585941 COL22A1Q8NFW1 1626 aaPredicted RBP17.74■□□□□ 0.43
LIG3-205ENST00000585941 CYP27B1O15528 508 aa17.74■□□□□ 0.43
LIG3-205ENST00000585941 GNAI2P04899 355 aa17.74■□□□□ 0.43
LIG3-205ENST00000585941 ANKRD45Q5TZF3 282 aa17.74■□□□□ 0.43
LIG3-205ENST00000585941 ZNF790Q6PG37 636 aa17.74■□□□□ 0.43
LIG3-205ENST00000585941 DDRGK1Q96HY6 314 aa17.74■□□□□ 0.43
LIG3-205ENST00000585941 CHPF2Q9P2E5 772 aa17.74■□□□□ 0.43
LIG3-205ENST00000585941 EVA1CP58658 441 aa17.73■□□□□ 0.43
LIG3-205ENST00000585941 NPM2Q86SE8 214 aaKnown RBP17.73■□□□□ 0.43
LIG3-205ENST00000585941 ZCRB1Q8TBF4 217 aaKnown RBP17.73■□□□□ 0.43
LIG3-205ENST00000585941 ZBTB47Q9UFB7 747 aaPredicted RBP17.73■□□□□ 0.43
LIG3-205ENST00000585941 COL14A1Q05707 1796 aaKnown RBP17.72■□□□□ 0.43
LIG3-205ENST00000585941 IL2RBP14784 551 aa17.72■□□□□ 0.43
LIG3-205ENST00000585941 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
LIG3-205ENST00000585941 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
LIG3-205ENST00000585941 NFATC2IPQ8NCF5 419 aa17.71■□□□□ 0.43
LIG3-205ENST00000585941 PHAXQ9H814 394 aaKnown RBP17.71■□□□□ 0.43
LIG3-205ENST00000585941 MSH5O43196 834 aa17.71■□□□□ 0.42
LIG3-205ENST00000585941 TTC5Q8N0Z6 440 aa17.7■□□□□ 0.42
LIG3-205ENST00000585941 DNAAF4Q8WXU2 420 aa17.7■□□□□ 0.42
LIG3-205ENST00000585941 SRCIN1Q9C0H9 1055 aa17.7■□□□□ 0.42
LIG3-205ENST00000585941 UPF2Q9HAU5 1272 aaKnown RBP17.7■□□□□ 0.42
LIG3-205ENST00000585941 DDX21Q9NR30 783 aaKnown RBP eCLIP17.7■□□□□ 0.42
LIG3-205ENST00000585941 ERVV-2B6SEH9 535 aa17.69■□□□□ 0.42
LIG3-205ENST00000585941 CABP4P57796 275 aa17.69■□□□□ 0.42
LIG3-205ENST00000585941 NKX1-1Q15270 411 aaPredicted RBP17.69■□□□□ 0.42
LIG3-205ENST00000585941 ERICH6Q7L0X2 663 aa17.69■□□□□ 0.42
LIG3-205ENST00000585941 DDX58O95786 925 aaKnown RBP17.67■□□□□ 0.42
LIG3-205ENST00000585941 UBTFL1P0CB47 393 aaPredicted RBP17.67■□□□□ 0.42
LIG3-205ENST00000585941 BMP2KLQ5H9B9 411 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 FMNL2Q96PY5 1086 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 STRN4Q9NRL3 753 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 HDAC5Q9UQL6 1122 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 NOP58Q9Y2X3 529 aaKnown RBP17.67■□□□□ 0.42
LIG3-205ENST00000585941 PI4KAP2A4QPH2 592 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 SNRPA1P09661 255 aaKnown RBP17.67■□□□□ 0.42
LIG3-205ENST00000585941 LARP1Q6PKG0 1096 aaKnown RBP17.67■□□□□ 0.42
LIG3-205ENST00000585941 PI4KAP1Q8N8J0 262 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 C5P01031 1676 aa17.67■□□□□ 0.42
LIG3-205ENST00000585941 SHANK3Q9BYB0 1731 aa17.66■□□□□ 0.42
LIG3-205ENST00000585941 KSR2Q6VAB6 950 aa17.66■□□□□ 0.42
LIG3-205ENST00000585941 USP44Q9H0E7 712 aa17.66■□□□□ 0.42
LIG3-205ENST00000585941 IBTKQ9P2D0 1353 aaPredicted RBP17.65■□□□□ 0.42
LIG3-205ENST00000585941 ALDH1L1O75891 902 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms