RNA–Protein interactions for RNA: ENST00000585395.6

LSM7-202, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM7, Length 621 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-202ENST00000585395 ATP10DQ9P241 1426 aa30.9■■■□□ 2.54
LSM7-202ENST00000585395 HSP90AB1P08238 724 aaKnown RBP30.89■■■□□ 2.54
LSM7-202ENST00000585395 NKX1-1Q15270 411 aaPredicted RBP30.89■■■□□ 2.54
LSM7-202ENST00000585395 C1orf141Q5JVX7 400 aa30.89■■■□□ 2.54
LSM7-202ENST00000585395 PRKRIP1Q9H875 184 aaPredicted RBP30.89■■■□□ 2.54
LSM7-202ENST00000585395 TMOD3Q9NYL9 352 aa30.89■■■□□ 2.54
LSM7-202ENST00000585395 CCNL1Q9UK58 526 aaPredicted RBP30.89■■■□□ 2.54
LSM7-202ENST00000585395 HMOX1P09601 288 aa30.88■■■□□ 2.53
LSM7-202ENST00000585395 U2SURPO15042 1029 aaKnown RBP30.87■■■□□ 2.53
LSM7-202ENST00000585395 ANP32CO43423 234 aa30.87■■■□□ 2.53
LSM7-202ENST00000585395 MSH5O43196 834 aa30.86■■■□□ 2.53
LSM7-202ENST00000585395 SMARCC1Q92922 1105 aaPredicted RBP30.86■■■□□ 2.53
LSM7-202ENST00000585395 KDRP35968 1356 aa30.85■■■□□ 2.53
LSM7-202ENST00000585395 PALLDQ8WX93 1383 aa30.85■■■□□ 2.53
LSM7-202ENST00000585395 GPBP1L1Q9HC44 474 aaPredicted RBP30.85■■■□□ 2.53
LSM7-202ENST00000585395 COL3A1P02461 1466 aaPredicted RBP30.84■■■□□ 2.53
LSM7-202ENST00000585395 COL23A1Q86Y22 540 aaPredicted RBP30.84■■■□□ 2.53
LSM7-202ENST00000585395 CD2APQ9Y5K6 639 aa30.83■■■□□ 2.53
LSM7-202ENST00000585395 HSPA6P17066 643 aa30.82■■■□□ 2.52
LSM7-202ENST00000585395 PIGBQ92521 554 aa30.82■■■□□ 2.52
LSM7-202ENST00000585395 DCAF5Q96JK2 942 aa30.82■■■□□ 2.52
LSM7-202ENST00000585395 HMGB2P26583 209 aaKnown RBP30.8■■■□□ 2.52
LSM7-202ENST00000585395 ADCY9O60503 1353 aa30.79■■■□□ 2.52
LSM7-202ENST00000585395 CABP4P57796 275 aa30.77■■■□□ 2.52
LSM7-202ENST00000585395 MSL1Q68DK7 614 aa30.77■■■□□ 2.52
LSM7-202ENST00000585395 ERVV-2B6SEH9 535 aa30.76■■■□□ 2.51
LSM7-202ENST00000585395 C5P01031 1676 aa30.75■■■□□ 2.51
LSM7-202ENST00000585395 FLAD1Q8NFF5 587 aa30.75■■■□□ 2.51
LSM7-202ENST00000585395 U2AF1L5P0DN76 240 aaPredicted RBP30.73■■■□□ 2.51
LSM7-202ENST00000585395 U2AF1Q01081 240 aaKnown RBP eCLIP30.73■■■□□ 2.51
LSM7-202ENST00000585395 AKAP4Q5JQC9 854 aa30.73■■■□□ 2.51
LSM7-202ENST00000585395 KDM6AO15550 1401 aaPredicted RBP30.73■■■□□ 2.51
LSM7-202ENST00000585395 ASAP1Q9ULH1 1129 aa30.72■■■□□ 2.51
LSM7-202ENST00000585395 TAF1LQ8IZX4 1826 aa30.7■■■□□ 2.51
LSM7-202ENST00000585395 PNNQ9H307 717 aaKnown RBP30.7■■■□□ 2.51
LSM7-202ENST00000585395 LOC102724428A0A0B4J2F2 783 aa30.69■■■□□ 2.5
LSM7-202ENST00000585395 NEFMP07197 916 aa30.69■■■□□ 2.5
LSM7-202ENST00000585395 SIK1P57059 783 aa30.69■■■□□ 2.5
LSM7-202ENST00000585395 ZNF526Q8TF50 670 aaPredicted RBP30.69■■■□□ 2.5
LSM7-202ENST00000585395 SCN11AQ9UI33 1791 aa30.69■■■□□ 2.5
LSM7-202ENST00000585395 AK7Q96M32 723 aa30.68■■■□□ 2.5
LSM7-202ENST00000585395 FCHSD2O94868 740 aa30.67■■■□□ 2.5
LSM7-202ENST00000585395 ATP6V1AP38606 617 aa30.67■■■□□ 2.5
LSM7-202ENST00000585395 MTHFSDQ2M296 383 aaKnown RBP30.67■■■□□ 2.5
LSM7-202ENST00000585395 RBM42Q9BTD8 480 aaKnown RBP30.67■■■□□ 2.5
LSM7-202ENST00000585395 ATG3Q9NT62 314 aa30.67■■■□□ 2.5
LSM7-202ENST00000585395 VIRMAQ69YN4 1812 aaKnown RBP30.66■■■□□ 2.5
LSM7-202ENST00000585395 WDR43Q15061 677 aaKnown RBP eCLIP30.65■■■□□ 2.5
LSM7-202ENST00000585395 C4BP0C0L5 1744 aa30.64■■■□□ 2.5
LSM7-202ENST00000585395 NFATC2IPQ8NCF5 419 aa30.64■■■□□ 2.5
LSM7-202ENST00000585395 GAS2L2Q8NHY3 880 aa30.64■■■□□ 2.5
LSM7-202ENST00000585395 PRKAR2BP31323 418 aa30.63■■■□□ 2.49
LSM7-202ENST00000585395 RNMTO43148 476 aaKnown RBP30.61■■■□□ 2.49
LSM7-202ENST00000585395 RSPH6AQ9H0K4 717 aa30.61■■■□□ 2.49
LSM7-202ENST00000585395 LGR6Q9HBX8 967 aa30.59■■■□□ 2.49
LSM7-202ENST00000585395 KIF3CO14782 793 aa30.58■■■□□ 2.49
LSM7-202ENST00000585395 SLC52A2Q9HAB3 445 aa30.58■■■□□ 2.49
LSM7-202ENST00000585395 PTCD1O75127 700 aaKnown RBP30.57■■■□□ 2.48
LSM7-202ENST00000585395 PHF14O94880 888 aa30.57■■■□□ 2.48
LSM7-202ENST00000585395 LINC00116Q8NCU8 138 aa30.57■■■□□ 2.48
LSM7-202ENST00000585395 GNAT3A8MTJ3 354 aa30.56■■■□□ 2.48
LSM7-202ENST00000585395 ITPK1Q13572 414 aa30.56■■■□□ 2.48
LSM7-202ENST00000585395 MAPK8IP3Q9UPT6 1336 aa30.55■■■□□ 2.48
LSM7-202ENST00000585395 APLP1P51693 650 aa30.55■■■□□ 2.48
LSM7-202ENST00000585395 GNPATO15228 680 aa30.54■■■□□ 2.48
LSM7-202ENST00000585395 DIEXFQ68CQ4 756 aaKnown RBP30.54■■■□□ 2.48
LSM7-202ENST00000585395 MRS2Q9HD23 443 aa30.54■■■□□ 2.48
LSM7-202ENST00000585395 TEFQ10587 303 aa30.53■■■□□ 2.48
LSM7-202ENST00000585395 UBR3Q6ZT12 1888 aa30.53■■■□□ 2.48
LSM7-202ENST00000585395 MRC1P22897 1456 aa30.52■■■□□ 2.48
LSM7-202ENST00000585395 PHACTR3Q96KR7 559 aa30.51■■■□□ 2.47
LSM7-202ENST00000585395 ZNF831Q5JPB2 1677 aa30.5■■■□□ 2.47
LSM7-202ENST00000585395 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.5■■■□□ 2.47
LSM7-202ENST00000585395 WWC3Q9ULE0 1092 aa30.5■■■□□ 2.47
LSM7-202ENST00000585395 CICQ96RK0 1608 aaPredicted RBP30.5■■■□□ 2.47
LSM7-202ENST00000585395 SSFA2P28290 1259 aa30.49■■■□□ 2.47
LSM7-202ENST00000585395 AMIGO3Q86WK7 504 aa30.49■■■□□ 2.47
LSM7-202ENST00000585395 RTF1Q92541 710 aaKnown RBP30.49■■■□□ 2.47
LSM7-202ENST00000585395 ADAMTS7Q9UKP4 1686 aa30.49■■■□□ 2.47
LSM7-202ENST00000585395 TTC5Q8N0Z6 440 aa30.48■■■□□ 2.47
LSM7-202ENST00000585395 SLC39A6Q13433 755 aa30.47■■■□□ 2.47
LSM7-202ENST00000585395 SLC4A9Q96Q91 983 aa30.47■■■□□ 2.47
LSM7-202ENST00000585395 RTCBQ9Y3I0 505 aaKnown RBP30.47■■■□□ 2.47
LSM7-202ENST00000585395 COL5A3P25940 1745 aaPredicted RBP30.47■■■□□ 2.47
LSM7-202ENST00000585395 TOMM70O94826 608 aa30.46■■■□□ 2.47
LSM7-202ENST00000585395 SMIM5Q71RC9 77 aa30.45■■■□□ 2.47
LSM7-202ENST00000585395 DNAJC5GQ8N7S2 189 aa30.44■■■□□ 2.46
LSM7-202ENST00000585395 PLEKHF1Q96S99 279 aa30.44■■■□□ 2.46
LSM7-202ENST00000585395 ADAMTS8Q9UP79 889 aa30.44■■■□□ 2.46
LSM7-202ENST00000585395 CNTNAP4Q9C0A0 1308 aa30.44■■■□□ 2.46
LSM7-202ENST00000585395 IL17REQ8NFR9 667 aa30.43■■■□□ 2.46
LSM7-202ENST00000585395 RC3H1Q5TC82 1133 aaKnown RBP30.42■■■□□ 2.46
LSM7-202ENST00000585395 RUNDC1Q96C34 613 aa30.42■■■□□ 2.46
LSM7-202ENST00000585395 TJP1Q07157 1748 aa30.42■■■□□ 2.46
LSM7-202ENST00000585395 HTATSF1O43719 755 aaKnown RBP30.41■■■□□ 2.46
LSM7-202ENST00000585395 TRAPPC3LQ5T215 181 aa30.41■■■□□ 2.46
LSM7-202ENST00000585395 CRKLP46109 303 aaKnown RBP30.39■■■□□ 2.46
LSM7-202ENST00000585395 NFE2L2Q16236 605 aa30.39■■■□□ 2.46
LSM7-202ENST00000585395 CCDC184Q52MB2 194 aa30.39■■■□□ 2.46
LSM7-202ENST00000585395 CCER2I3L3R5 266 aa30.38■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms