RNA–Protein interactions for RNA: ENST00000582671.1

LIMS2-218, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 4

Gene LIMS2, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-218ENST00000582671 COL5A3P25940 1745 aaPredicted RBP25.2■■□□□ 1.63
LIMS2-218ENST00000582671 CFAP53Q96M91 514 aa25.2■■□□□ 1.62
LIMS2-218ENST00000582671 ITPK1Q13572 414 aa25.19■■□□□ 1.62
LIMS2-218ENST00000582671 COL23A1Q86Y22 540 aaPredicted RBP25.19■■□□□ 1.62
LIMS2-218ENST00000582671 NFATC2IPQ8NCF5 419 aa25.18■■□□□ 1.62
LIMS2-218ENST00000582671 LINC00116Q8NCU8 138 aa25.18■■□□□ 1.62
LIMS2-218ENST00000582671 LGR6Q9HBX8 967 aa25.18■■□□□ 1.62
LIMS2-218ENST00000582671 SLC4A9Q96Q91 983 aa25.17■■□□□ 1.62
LIMS2-218ENST00000582671 ATP6V1AP38606 617 aa25.16■■□□□ 1.62
LIMS2-218ENST00000582671 DDX10Q13206 875 aaKnown RBP25.16■■□□□ 1.62
LIMS2-218ENST00000582671 AMIGO3Q86WK7 504 aa25.16■■□□□ 1.62
LIMS2-218ENST00000582671 SLC16A10Q8TF71 515 aa25.16■■□□□ 1.62
LIMS2-218ENST00000582671 MRC1P22897 1456 aa25.15■■□□□ 1.62
LIMS2-218ENST00000582671 TJP1Q07157 1748 aa25.15■■□□□ 1.62
LIMS2-218ENST00000582671 MYH14Q7Z406 1995 aaKnown RBP25.14■■□□□ 1.62
LIMS2-218ENST00000582671 SIPA1L3O60292 1781 aaPredicted RBP25.14■■□□□ 1.62
LIMS2-218ENST00000582671 RNMTO43148 476 aaKnown RBP25.14■■□□□ 1.62
LIMS2-218ENST00000582671 SMIM5Q71RC9 77 aa25.14■■□□□ 1.62
LIMS2-218ENST00000582671 RBM42Q9BTD8 480 aaKnown RBP25.13■■□□□ 1.61
LIMS2-218ENST00000582671 RSPH6AQ9H0K4 717 aa25.13■■□□□ 1.61
LIMS2-218ENST00000582671 HMGB2P26583 209 aaKnown RBP25.12■■□□□ 1.61
LIMS2-218ENST00000582671 PRKAR2BP31323 418 aa25.12■■□□□ 1.61
LIMS2-218ENST00000582671 PHACTR3Q96KR7 559 aa25.12■■□□□ 1.61
LIMS2-218ENST00000582671 AK7Q96M32 723 aa25.12■■□□□ 1.61
LIMS2-218ENST00000582671 SLC52A2Q9HAB3 445 aa25.12■■□□□ 1.61
LIMS2-218ENST00000582671 NUDCQ9Y266 331 aa25.12■■□□□ 1.61
LIMS2-218ENST00000582671 CICQ96RK0 1608 aaPredicted RBP25.12■■□□□ 1.61
LIMS2-218ENST00000582671 MSH5O43196 834 aa25.11■■□□□ 1.61
LIMS2-218ENST00000582671 U2AF1L5P0DN76 240 aaPredicted RBP25.1■■□□□ 1.61
LIMS2-218ENST00000582671 U2AF1Q01081 240 aaKnown RBP eCLIP25.1■■□□□ 1.61
LIMS2-218ENST00000582671 UBR2Q8IWV8 1755 aa25.09■■□□□ 1.61
LIMS2-218ENST00000582671 ARXQ96QS3 562 aa25.09■■□□□ 1.61
LIMS2-218ENST00000582671 PTCD1O75127 700 aaKnown RBP25.08■■□□□ 1.61
LIMS2-218ENST00000582671 PHF14O94880 888 aa25.08■■□□□ 1.61
LIMS2-218ENST00000582671 FLAD1Q8NFF5 587 aa25.08■■□□□ 1.61
LIMS2-218ENST00000582671 GAS2L2Q8NHY3 880 aa25.08■■□□□ 1.61
LIMS2-218ENST00000582671 FHDC1Q9C0D6 1143 aaPredicted RBP25.08■■□□□ 1.61
LIMS2-218ENST00000582671 DLG5Q8TDM6 1919 aa25.08■■□□□ 1.6
LIMS2-218ENST00000582671 MAP3K5Q99683 1374 aa25.07■■□□□ 1.6
LIMS2-218ENST00000582671 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.07■■□□□ 1.6
LIMS2-218ENST00000582671 IL17REQ8NFR9 667 aa25.06■■□□□ 1.6
LIMS2-218ENST00000582671 GNAT3A8MTJ3 354 aa25.05■■□□□ 1.6
LIMS2-218ENST00000582671 GNPATO15228 680 aa25.05■■□□□ 1.6
LIMS2-218ENST00000582671 ZEB1P37275 1124 aaPredicted RBP25.05■■□□□ 1.6
LIMS2-218ENST00000582671 SLC39A6Q13433 755 aa25.05■■□□□ 1.6
LIMS2-218ENST00000582671 MSL1Q68DK7 614 aa25.05■■□□□ 1.6
LIMS2-218ENST00000582671 SYT17Q9BSW7 474 aa25.05■■□□□ 1.6
LIMS2-218ENST00000582671 KCPQ6ZWJ8 1503 aa25.05■■□□□ 1.6
LIMS2-218ENST00000582671 C4AP0C0L4 1744 aa25.04■■□□□ 1.6
LIMS2-218ENST00000582671 FCHSD2O94868 740 aa25.04■■□□□ 1.6
LIMS2-218ENST00000582671 SSFA2P28290 1259 aa25.04■■□□□ 1.6
LIMS2-218ENST00000582671 POLD1P28340 1107 aa25.04■■□□□ 1.6
LIMS2-218ENST00000582671 RALBP1Q15311 655 aa25.03■■□□□ 1.6
LIMS2-218ENST00000582671 RC3H1Q5TC82 1133 aaKnown RBP25.01■■□□□ 1.59
LIMS2-218ENST00000582671 CNTNAP4Q9C0A0 1308 aa25.01■■□□□ 1.59
LIMS2-218ENST00000582671 CEMIPQ8WUJ3 1361 aa24.99■■□□□ 1.59
LIMS2-218ENST00000582671 DNAJC10Q8IXB1 793 aa24.98■■□□□ 1.59
LIMS2-218ENST00000582671 RTCBQ9Y3I0 505 aaKnown RBP24.98■■□□□ 1.59
LIMS2-218ENST00000582671 RPS6KA4O75676 772 aa24.96■■□□□ 1.59
LIMS2-218ENST00000582671 CRKLP46109 303 aaKnown RBP24.96■■□□□ 1.59
LIMS2-218ENST00000582671 TEFQ10587 303 aa24.96■■□□□ 1.59
LIMS2-218ENST00000582671 KLHL34Q8N239 644 aa24.96■■□□□ 1.59
LIMS2-218ENST00000582671 TRAPPC3LQ5T215 181 aa24.95■■□□□ 1.58
LIMS2-218ENST00000582671 PLEKHF1Q96S99 279 aa24.95■■□□□ 1.58
LIMS2-218ENST00000582671 MYBBP1AQ9BQG0 1328 aaKnown RBP24.94■■□□□ 1.58
LIMS2-218ENST00000582671 INTS5Q6P9B9 1019 aaKnown RBP24.94■■□□□ 1.58
LIMS2-218ENST00000582671 ARHGEF1Q92888 912 aaKnown RBP24.94■■□□□ 1.58
LIMS2-218ENST00000582671 MCM10Q7L590 875 aa24.93■■□□□ 1.58
LIMS2-218ENST00000582671 DCTN1Q14203 1278 aa24.92■■□□□ 1.58
LIMS2-218ENST00000582671 CYP19A1P11511 503 aaPredicted RBP24.91■■□□□ 1.58
LIMS2-218ENST00000582671 ADRA2BP18089 450 aa24.91■■□□□ 1.58
LIMS2-218ENST00000582671 ZNF790Q6PG37 636 aa24.91■■□□□ 1.58
LIMS2-218ENST00000582671 NLGN2Q8NFZ4 835 aa24.91■■□□□ 1.58
LIMS2-218ENST00000582671 ZNF496Q96IT1 587 aaPredicted RBP24.91■■□□□ 1.58
LIMS2-218ENST00000582671 KCNQ3O43525 872 aa24.9■■□□□ 1.58
LIMS2-218ENST00000582671 TTC5Q8N0Z6 440 aa24.9■■□□□ 1.58
LIMS2-218ENST00000582671 VSIG10Q8N0Z9 540 aa24.9■■□□□ 1.58
LIMS2-218ENST00000582671 RTF1Q92541 710 aaKnown RBP24.89■■□□□ 1.58
LIMS2-218ENST00000582671 CCDC87Q9NVE4 849 aa24.89■■□□□ 1.58
LIMS2-218ENST00000582671 DCAF8L1A6NGE4 600 aa24.88■■□□□ 1.57
LIMS2-218ENST00000582671 HTATSF1O43719 755 aaKnown RBP24.88■■□□□ 1.57
LIMS2-218ENST00000582671 RFC4P35249 363 aa24.88■■□□□ 1.57
LIMS2-218ENST00000582671 PRKRIP1Q9H875 184 aaPredicted RBP24.88■■□□□ 1.57
LIMS2-218ENST00000582671 HEG1Q9ULI3 1381 aa24.88■■□□□ 1.57
LIMS2-218ENST00000582671 KIF13BQ9NQT8 1826 aa24.88■■□□□ 1.57
LIMS2-218ENST00000582671 BTBD11A6QL63 1104 aa24.87■■□□□ 1.57
LIMS2-218ENST00000582671 GYS1P13807 737 aa24.87■■□□□ 1.57
LIMS2-218ENST00000582671 KDM3BQ7LBC6 1761 aa24.86■■□□□ 1.57
LIMS2-218ENST00000582671 ZBTB1Q9Y2K1 713 aa24.86■■□□□ 1.57
LIMS2-218ENST00000582671 CHD4Q14839 1912 aa24.86■■□□□ 1.57
LIMS2-218ENST00000582671 SOS1Q07889 1333 aaPredicted RBP24.86■■□□□ 1.57
LIMS2-218ENST00000582671 NEFMP07197 916 aa24.85■■□□□ 1.57
LIMS2-218ENST00000582671 SRP68Q9UHB9 627 aaKnown RBP24.85■■□□□ 1.57
LIMS2-218ENST00000582671 MMP10P09238 476 aa24.84■■□□□ 1.57
LIMS2-218ENST00000582671 NFE2L2Q16236 605 aa24.84■■□□□ 1.57
LIMS2-218ENST00000582671 CD2APQ9Y5K6 639 aa24.84■■□□□ 1.57
LIMS2-218ENST00000582671 USP42Q9H9J4 1324 aaKnown RBP24.84■■□□□ 1.57
LIMS2-218ENST00000582671 KIAA1551Q9HCM1 1747 aa24.83■■□□□ 1.57
LIMS2-218ENST00000582671 NLGN1Q8N2Q7 840 aa24.83■■□□□ 1.57
LIMS2-218ENST00000582671 PNNQ9H307 717 aaKnown RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms