RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 SIRT1Q96EB6 747 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 STK31Q9BXU1 1019 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 ANO2Q9NQ90 1003 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 TUBGCP6Q96RT7 1819 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 BRD1O95696 1058 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 ZKSCAN5Q9Y2L8 839 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 NALCNQ8IZF0 1738 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 TRIM6-TRIM34B2RNG4 842 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 ANAPC15P60006 121 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 SYAP1Q96A49 352 aaPredicted RBP14.85□□□□□ -0.03
SHMT1-208ENST00000582352 PDCL3Q9H2J4 239 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 NSFL1CQ9UNZ2 370 aaKnown RBP14.85□□□□□ -0.03
SHMT1-208ENST00000582352 SSH2Q76I76 1423 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 ARHGEF10O15013 1369 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 CUL4AQ13619 759 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 NOL8Q76FK4 1167 aaKnown RBP14.85□□□□□ -0.03
SHMT1-208ENST00000582352 RILPL2Q969X0 211 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 CCDC39Q9UFE4 941 aa14.85□□□□□ -0.03
SHMT1-208ENST00000582352 R3HCC1Q9Y3T6 440 aaKnown RBP14.85□□□□□ -0.03
SHMT1-208ENST00000582352 SOX12O15370 315 aa14.84□□□□□ -0.03
SHMT1-208ENST00000582352 MCM5P33992 734 aa14.84□□□□□ -0.03
SHMT1-208ENST00000582352 INTS4Q96HW7 963 aaKnown RBP14.84□□□□□ -0.03
SHMT1-208ENST00000582352 SALL3Q9BXA9 1300 aa14.84□□□□□ -0.03
SHMT1-208ENST00000582352 GNAI3P08754 354 aa14.84□□□□□ -0.03
SHMT1-208ENST00000582352 XPCQ01831 940 aaPredicted RBP14.84□□□□□ -0.03
SHMT1-208ENST00000582352 MLECQ14165 292 aa14.84□□□□□ -0.03
SHMT1-208ENST00000582352 ACEP12821 1306 aa14.83□□□□□ -0.03
SHMT1-208ENST00000582352 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.83□□□□□ -0.04
SHMT1-208ENST00000582352 PALD1Q9ULE6 856 aa14.83□□□□□ -0.04
SHMT1-208ENST00000582352 RIMS1Q86UR5 1692 aaKnown RBP14.83□□□□□ -0.04
SHMT1-208ENST00000582352 MAP3K19Q56UN5 1328 aa14.83□□□□□ -0.04
SHMT1-208ENST00000582352 FMN2Q9NZ56 1722 aa14.83□□□□□ -0.04
SHMT1-208ENST00000582352 HDGFP51858 240 aaKnown RBP14.83□□□□□ -0.04
SHMT1-208ENST00000582352 CSPP1Q1MSJ5 1256 aa14.83□□□□□ -0.04
SHMT1-208ENST00000582352 RNF214Q8ND24 703 aa14.83□□□□□ -0.04
SHMT1-208ENST00000582352 TOPAZ1Q8N9V7 1692 aa14.83□□□□□ -0.04
SHMT1-208ENST00000582352 USP6P35125 1406 aa14.82□□□□□ -0.04
SHMT1-208ENST00000582352 FOXO3O43524 673 aa14.82□□□□□ -0.04
SHMT1-208ENST00000582352 CHMLP26374 656 aa14.82□□□□□ -0.04
SHMT1-208ENST00000582352 FKBP5Q13451 457 aaPredicted RBP14.82□□□□□ -0.04
SHMT1-208ENST00000582352 TSPY26PQ9H489 355 aa14.82□□□□□ -0.04
SHMT1-208ENST00000582352 PHF14O94880 888 aa14.82□□□□□ -0.04
SHMT1-208ENST00000582352 MTHFSDQ2M296 383 aaKnown RBP14.82□□□□□ -0.04
SHMT1-208ENST00000582352 SRCIN1Q9C0H9 1055 aa14.82□□□□□ -0.04
SHMT1-208ENST00000582352 FAM208AQ9UK61 1670 aaKnown RBP14.81□□□□□ -0.04
SHMT1-208ENST00000582352 ROBO2Q9HCK4 1378 aa14.81□□□□□ -0.04
SHMT1-208ENST00000582352 FLIIQ13045 1269 aa14.81□□□□□ -0.04
SHMT1-208ENST00000582352 USP31Q70CQ4 1352 aa14.81□□□□□ -0.04
SHMT1-208ENST00000582352 PNMA6EA0A0J9YXQ4 647 aa14.8□□□□□ -0.04
SHMT1-208ENST00000582352 PTMAP06454 111 aaKnown RBP14.8□□□□□ -0.04
SHMT1-208ENST00000582352 NUTM2FA1L443 756 aa14.8□□□□□ -0.04
SHMT1-208ENST00000582352 UPF3BQ9BZI7 483 aaKnown RBP14.8□□□□□ -0.04
SHMT1-208ENST00000582352 CCDC30Q5VVM6 783 aa14.79□□□□□ -0.04
SHMT1-208ENST00000582352 XRN1Q8IZH2 1706 aaKnown RBP14.79□□□□□ -0.04
SHMT1-208ENST00000582352 ATP8B2P98198 1209 aa14.79□□□□□ -0.04
SHMT1-208ENST00000582352 STAP2Q9UGK3 403 aa14.79□□□□□ -0.04
SHMT1-208ENST00000582352 WDR33Q9C0J8 1336 aaKnown RBP14.79□□□□□ -0.04
SHMT1-208ENST00000582352 FLT4P35916 1363 aa14.79□□□□□ -0.04
SHMT1-208ENST00000582352 UQCRHLA0A096LP55 91 aa14.79□□□□□ -0.04
SHMT1-208ENST00000582352 UQCRHP07919 91 aa14.79□□□□□ -0.04
SHMT1-208ENST00000582352 FOXD4L6Q3SYB3 417 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-208ENST00000582352 FOXD4L3Q6VB84 417 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-208ENST00000582352 PLEKHG3A1L390 1219 aa14.78□□□□□ -0.04
SHMT1-208ENST00000582352 ESF1Q9H501 851 aaKnown RBP14.78□□□□□ -0.04
SHMT1-208ENST00000582352 LRRFIP2Q9Y608 721 aaKnown RBP14.78□□□□□ -0.04
SHMT1-208ENST00000582352 AOX1Q06278 1338 aa14.78□□□□□ -0.04
SHMT1-208ENST00000582352 TSPOAP1O95153 1857 aa14.78□□□□□ -0.04
SHMT1-208ENST00000582352 RBM10P98175 930 aaKnown RBP14.78□□□□□ -0.04
SHMT1-208ENST00000582352 ZMYND15Q9H091 742 aa14.78□□□□□ -0.04
SHMT1-208ENST00000582352 KDRP35968 1356 aa14.78□□□□□ -0.04
SHMT1-208ENST00000582352 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.77□□□□□ -0.04
SHMT1-208ENST00000582352 FAM69CQ0P6D2 419 aa14.77□□□□□ -0.04
SHMT1-208ENST00000582352 IL17RAQ96F46 866 aa14.77□□□□□ -0.04
SHMT1-208ENST00000582352 SBNO1A3KN83 1393 aa14.77□□□□□ -0.04
SHMT1-208ENST00000582352 NECTIN2Q92692 538 aa14.77□□□□□ -0.05
SHMT1-208ENST00000582352 GDPD2Q9HCC8 539 aa14.77□□□□□ -0.05
SHMT1-208ENST00000582352 FAM13BQ9NYF5 915 aa14.77□□□□□ -0.05
SHMT1-208ENST00000582352 LRRC37A3O60309 1634 aa14.77□□□□□ -0.05
SHMT1-208ENST00000582352 N4BP2Q86UW6 1770 aaPredicted RBP14.77□□□□□ -0.05
SHMT1-208ENST00000582352 UNC5CLQ8IV45 518 aa14.76□□□□□ -0.05
SHMT1-208ENST00000582352 MAP7D2Q96T17 732 aa14.76□□□□□ -0.05
SHMT1-208ENST00000582352 PXDNLA1KZ92 1463 aa14.76□□□□□ -0.05
SHMT1-208ENST00000582352 SOS1Q07889 1333 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-208ENST00000582352 EPB41L2O43491 1005 aaKnown RBP14.76□□□□□ -0.05
SHMT1-208ENST00000582352 UBTFL1P0CB47 393 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-208ENST00000582352 PKNOX2Q96KN3 472 aa14.76□□□□□ -0.05
SHMT1-208ENST00000582352 CEP170BQ9Y4F5 1589 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-208ENST00000582352 CACNA1FO60840 1977 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 AMPHP49418 695 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 KIAA2012Q0VF49 1180 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 TTC21AQ8NDW8 1320 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 HSPA4P34932 840 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 USP48Q86UV5 1035 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 FAM184AQ8NB25 1140 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 IL1RAPL2Q9NP60 686 aa14.75□□□□□ -0.05
SHMT1-208ENST00000582352 IGSF1Q8N6C5 1336 aa14.74□□□□□ -0.05
SHMT1-208ENST00000582352 GADD45BO75293 160 aaPredicted RBP14.74□□□□□ -0.05
SHMT1-208ENST00000582352 DIP2BQ9P265 1576 aa14.74□□□□□ -0.05
SHMT1-208ENST00000582352 HTATSF1O43719 755 aaKnown RBP14.74□□□□□ -0.05
SHMT1-208ENST00000582352 SASS6Q6UVJ0 657 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms