RNA–Protein interactions for RNA: ENST00000580446.1

CSNK1D-213, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 612 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-213ENST00000580446 TMC1Q8TDI8 760 aa20.27■□□□□ 0.84
CSNK1D-213ENST00000580446 SMARCC1Q92922 1105 aaPredicted RBP20.27■□□□□ 0.84
CSNK1D-213ENST00000580446 PIM2Q9P1W9 311 aa20.27■□□□□ 0.84
CSNK1D-213ENST00000580446 CCDC85CA6NKD9 419 aa20.26■□□□□ 0.83
CSNK1D-213ENST00000580446 CYP27B1O15528 508 aa20.26■□□□□ 0.83
CSNK1D-213ENST00000580446 TMF1P82094 1093 aa20.26■□□□□ 0.83
CSNK1D-213ENST00000580446 AIDAQ96BJ3 306 aa20.26■□□□□ 0.83
CSNK1D-213ENST00000580446 AMPHP49418 695 aa20.25■□□□□ 0.83
CSNK1D-213ENST00000580446 RAPGEF4Q8WZA2 1011 aa20.25■□□□□ 0.83
CSNK1D-213ENST00000580446 PARP3Q9Y6F1 533 aa20.24■□□□□ 0.83
CSNK1D-213ENST00000580446 BRCA1P38398 1863 aaKnown RBP20.24■□□□□ 0.83
CSNK1D-213ENST00000580446 POTECB2RU33 542 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 POTEIP0CG38 1075 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 POTEJP0CG39 1038 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 ATP6V1AP38606 617 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 CREBZFQ9NS37 354 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 ASAP1Q9ULH1 1129 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 PCDH11XQ9BZA7 1347 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 PCDH11YQ9BZA8 1340 aa20.23■□□□□ 0.83
CSNK1D-213ENST00000580446 C4AP0C0L4 1744 aa20.22■□□□□ 0.83
CSNK1D-213ENST00000580446 GLTPD2A6NH11 291 aa20.22■□□□□ 0.83
CSNK1D-213ENST00000580446 TATP17735 454 aaPredicted RBP20.22■□□□□ 0.83
CSNK1D-213ENST00000580446 NLGN1Q8N2Q7 840 aa20.22■□□□□ 0.83
CSNK1D-213ENST00000580446 GYS1P13807 737 aa20.21■□□□□ 0.83
CSNK1D-213ENST00000580446 TRAPPC3LQ5T215 181 aa20.21■□□□□ 0.83
CSNK1D-213ENST00000580446 SLC12A5Q9H2X9 1139 aa20.21■□□□□ 0.83
CSNK1D-213ENST00000580446 CNTNAP1P78357 1384 aa20.21■□□□□ 0.83
CSNK1D-213ENST00000580446 HMGB2P26583 209 aaKnown RBP20.2■□□□□ 0.82
CSNK1D-213ENST00000580446 VEGFBP49765 207 aa20.2■□□□□ 0.82
CSNK1D-213ENST00000580446 ARHGEF1Q92888 912 aaKnown RBP20.2■□□□□ 0.82
CSNK1D-213ENST00000580446 ARFGEF1Q9Y6D6 1849 aa20.19■□□□□ 0.82
CSNK1D-213ENST00000580446 HSPA8P11142 646 aaKnown RBP20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 RRS1Q15050 365 aaKnown RBP20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 HDGFL2Q7Z4V5 671 aaPredicted RBP20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 CFAP44Q96MT7 982 aa20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 RTCBQ9Y3I0 505 aaKnown RBP20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 MAP2P11137 1827 aaKnown RBP20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 EDC4Q6P2E9 1401 aaKnown RBP20.18■□□□□ 0.82
CSNK1D-213ENST00000580446 DDR1Q08345 913 aa20.17■□□□□ 0.82
CSNK1D-213ENST00000580446 WBP1LQ9NX94 342 aa20.16■□□□□ 0.82
CSNK1D-213ENST00000580446 SRP68Q9UHB9 627 aaKnown RBP20.16■□□□□ 0.82
CSNK1D-213ENST00000580446 A0A1W2PP64 1363 aa20.16■□□□□ 0.82
CSNK1D-213ENST00000580446 LMNB1P20700 586 aa20.15■□□□□ 0.82
CSNK1D-213ENST00000580446 CGNL1Q0VF96 1302 aa20.15■□□□□ 0.82
CSNK1D-213ENST00000580446 KDM6AO15550 1401 aaPredicted RBP20.15■□□□□ 0.82
CSNK1D-213ENST00000580446 ITGB4P16144 1822 aa20.15■□□□□ 0.82
CSNK1D-213ENST00000580446 RFC4P35249 363 aa20.14■□□□□ 0.81
CSNK1D-213ENST00000580446 CHADLQ6NUI6 762 aa20.14■□□□□ 0.81
CSNK1D-213ENST00000580446 SBF1O95248 1867 aa20.13■□□□□ 0.81
CSNK1D-213ENST00000580446 SLC4A9Q96Q91 983 aa20.13■□□□□ 0.81
CSNK1D-213ENST00000580446 TMOD3Q9NYL9 352 aa20.13■□□□□ 0.81
CSNK1D-213ENST00000580446 RGS19P49795 217 aa20.12■□□□□ 0.81
CSNK1D-213ENST00000580446 COG3Q96JB2 828 aa20.12■□□□□ 0.81
CSNK1D-213ENST00000580446 ATG3Q9NT62 314 aa20.12■□□□□ 0.81
CSNK1D-213ENST00000580446 ZC3H4Q9UPT8 1303 aaKnown RBP20.11■□□□□ 0.81
CSNK1D-213ENST00000580446 FKBP8Q14318 412 aa20.11■□□□□ 0.81
CSNK1D-213ENST00000580446 HSP90AB2PQ58FF8 381 aa20.09■□□□□ 0.81
CSNK1D-213ENST00000580446 RBM42Q9BTD8 480 aaKnown RBP20.09■□□□□ 0.81
CSNK1D-213ENST00000580446 TIAM2Q8IVF5 1701 aa20.09■□□□□ 0.81
CSNK1D-213ENST00000580446 NFKBIEO00221 500 aa20.08■□□□□ 0.81
CSNK1D-213ENST00000580446 ROCK2O75116 1388 aaKnown RBP20.08■□□□□ 0.8
CSNK1D-213ENST00000580446 SMG6Q86US8 1419 aaKnown RBP20.07■□□□□ 0.8
CSNK1D-213ENST00000580446 KDRP35968 1356 aa20.07■□□□□ 0.8
CSNK1D-213ENST00000580446 TERF2IPQ9NYB0 399 aa20.06■□□□□ 0.8
CSNK1D-213ENST00000580446 ZNF219Q9P2Y4 722 aaPredicted RBP20.06■□□□□ 0.8
CSNK1D-213ENST00000580446 TSKSQ9UJT2 592 aa20.06■□□□□ 0.8
CSNK1D-213ENST00000580446 PASKQ96RG2 1323 aa20.05■□□□□ 0.8
CSNK1D-213ENST00000580446 TNRC18O15417 2968 aaPredicted RBP20.05■□□□□ 0.8
CSNK1D-213ENST00000580446 RTL1A6NKG5 1358 aa20.05■□□□□ 0.8
CSNK1D-213ENST00000580446 RPS6KA4O75676 772 aa20.04■□□□□ 0.8
CSNK1D-213ENST00000580446 ADRA2BP18089 450 aa20.04■□□□□ 0.8
CSNK1D-213ENST00000580446 NKX1-1Q15270 411 aaPredicted RBP20.04■□□□□ 0.8
CSNK1D-213ENST00000580446 DDNO94850 711 aaPredicted RBP20.03■□□□□ 0.8
CSNK1D-213ENST00000580446 L3MBTL2Q969R5 705 aa20.03■□□□□ 0.8
CSNK1D-213ENST00000580446 TMEM88BA6NKF7 163 aa20.02■□□□□ 0.8
CSNK1D-213ENST00000580446 POLRMTO00411 1230 aaKnown RBP20.02■□□□□ 0.8
CSNK1D-213ENST00000580446 DPY19L2Q6NUT2 758 aa20.02■□□□□ 0.8
CSNK1D-213ENST00000580446 CNTNAP4Q9C0A0 1308 aa20.01■□□□□ 0.79
CSNK1D-213ENST00000580446 ERFEQ4G0M1 354 aa20■□□□□ 0.79
CSNK1D-213ENST00000580446 GGNBP2Q9H3C7 697 aa20■□□□□ 0.79
CSNK1D-213ENST00000580446 USP42Q9H9J4 1324 aaKnown RBP20■□□□□ 0.79
CSNK1D-213ENST00000580446 GRM1Q13255 1194 aa19.99■□□□□ 0.79
CSNK1D-213ENST00000580446 RC3H1Q5TC82 1133 aaKnown RBP19.99■□□□□ 0.79
CSNK1D-213ENST00000580446 SPG7Q9UQ90 795 aa19.98■□□□□ 0.79
CSNK1D-213ENST00000580446 WDR33Q9C0J8 1336 aaKnown RBP19.98■□□□□ 0.79
CSNK1D-213ENST00000580446 EAPPQ56P03 285 aaPredicted RBP19.97■□□□□ 0.79
CSNK1D-213ENST00000580446 TTLL6Q8N841 843 aa19.97■□□□□ 0.79
CSNK1D-213ENST00000580446 VIRMAQ69YN4 1812 aaKnown RBP19.97■□□□□ 0.79
CSNK1D-213ENST00000580446 INSRP06213 1382 aa19.96■□□□□ 0.79
CSNK1D-213ENST00000580446 ITGBL1O95965 494 aaPredicted RBP19.96■□□□□ 0.79
CSNK1D-213ENST00000580446 PHKG2P15735 406 aa19.96■□□□□ 0.79
CSNK1D-213ENST00000580446 DEFB115Q30KQ5 88 aa19.96■□□□□ 0.79
CSNK1D-213ENST00000580446 C2CD5Q86YS7 1000 aa19.96■□□□□ 0.79
CSNK1D-213ENST00000580446 MCOLN1Q9GZU1 580 aa19.96■□□□□ 0.79
CSNK1D-213ENST00000580446 CRKLP46109 303 aaKnown RBP19.95■□□□□ 0.78
CSNK1D-213ENST00000580446 MAP2K1Q02750 393 aaPredicted RBP19.95■□□□□ 0.78
CSNK1D-213ENST00000580446 LDHDQ86WU2 507 aa19.95■□□□□ 0.78
CSNK1D-213ENST00000580446 CARMIL3Q8ND23 1372 aa19.95■□□□□ 0.78
CSNK1D-213ENST00000580446 PTCD1O75127 700 aaKnown RBP19.94■□□□□ 0.78
CSNK1D-213ENST00000580446 TM4SF1P30408 202 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms