RNA–Protein interactions for RNA: ENST00000577246.5

COPS3-214, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 639 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-214ENST00000577246 SMIM5Q71RC9 77 aa18.52■□□□□ 0.56
COPS3-214ENST00000577246 RTCBQ9Y3I0 505 aaKnown RBP18.52■□□□□ 0.56
COPS3-214ENST00000577246 ADRA2BP18089 450 aa18.51■□□□□ 0.55
COPS3-214ENST00000577246 TRAPPC3LQ5T215 181 aa18.51■□□□□ 0.55
COPS3-214ENST00000577246 EYA1Q99502 592 aa18.51■□□□□ 0.55
COPS3-214ENST00000577246 TOMM70O94826 608 aa18.5■□□□□ 0.55
COPS3-214ENST00000577246 CARD14Q9BXL6 1004 aa18.5■□□□□ 0.55
COPS3-214ENST00000577246 BCS1LQ9Y276 419 aa18.5■□□□□ 0.55
COPS3-214ENST00000577246 PXDNLA1KZ92 1463 aa18.5■□□□□ 0.55
COPS3-214ENST00000577246 MAP2P11137 1827 aaKnown RBP18.49■□□□□ 0.55
COPS3-214ENST00000577246 HSP90AB1P08238 724 aaKnown RBP18.49■□□□□ 0.55
COPS3-214ENST00000577246 ATG3Q9NT62 314 aa18.49■□□□□ 0.55
COPS3-214ENST00000577246 CCDC87Q9NVE4 849 aa18.49■□□□□ 0.55
COPS3-214ENST00000577246 C10orf71Q711Q0 1435 aa18.48■□□□□ 0.55
COPS3-214ENST00000577246 ANKRD26Q9UPS8 1709 aa18.47■□□□□ 0.55
COPS3-214ENST00000577246 ERVV-2B6SEH9 535 aa18.47■□□□□ 0.55
COPS3-214ENST00000577246 RC3H1Q5TC82 1133 aaKnown RBP18.47■□□□□ 0.55
COPS3-214ENST00000577246 KDRP35968 1356 aa18.46■□□□□ 0.55
COPS3-214ENST00000577246 RFC4P35249 363 aa18.46■□□□□ 0.55
COPS3-214ENST00000577246 ARHGAP27Q6ZUM4 889 aa18.46■□□□□ 0.55
COPS3-214ENST00000577246 PARP3Q9Y6F1 533 aa18.46■□□□□ 0.55
COPS3-214ENST00000577246 A0A0G2JLW4 131 aa18.45■□□□□ 0.54
COPS3-214ENST00000577246 DCAF5Q96JK2 942 aa18.45■□□□□ 0.54
COPS3-214ENST00000577246 RBM42Q9BTD8 480 aaKnown RBP18.45■□□□□ 0.54
COPS3-214ENST00000577246 POLKQ9UBT6 870 aa18.45■□□□□ 0.54
COPS3-214ENST00000577246 CNTNAP4Q9C0A0 1308 aa18.45■□□□□ 0.54
COPS3-214ENST00000577246 FCHSD2O94868 740 aa18.44■□□□□ 0.54
COPS3-214ENST00000577246 C16orf71Q8IYS4 520 aaPredicted RBP18.44■□□□□ 0.54
COPS3-214ENST00000577246 ARHGEF1Q92888 912 aaKnown RBP18.44■□□□□ 0.54
COPS3-214ENST00000577246 KIF13BQ9NQT8 1826 aa18.43■□□□□ 0.54
COPS3-214ENST00000577246 ZNF831Q5JPB2 1677 aa18.42■□□□□ 0.54
COPS3-214ENST00000577246 RPS6KA4O75676 772 aa18.42■□□□□ 0.54
COPS3-214ENST00000577246 GYS1P13807 737 aa18.42■□□□□ 0.54
COPS3-214ENST00000577246 DPEP1P16444 411 aa18.42■□□□□ 0.54
COPS3-214ENST00000577246 EIF4A2Q14240 407 aaKnown RBP18.42■□□□□ 0.54
COPS3-214ENST00000577246 RBM46Q8TBY0 533 aaKnown RBP18.42■□□□□ 0.54
COPS3-214ENST00000577246 AMOTQ4VCS5 1084 aa18.41■□□□□ 0.54
COPS3-214ENST00000577246 PLEKHO1Q53GL0 409 aaPredicted RBP18.41■□□□□ 0.54
COPS3-214ENST00000577246 CABP4P57796 275 aa18.4■□□□□ 0.54
COPS3-214ENST00000577246 NMRK2Q9NPI5 230 aa18.4■□□□□ 0.54
COPS3-214ENST00000577246 PIM2Q9P1W9 311 aa18.4■□□□□ 0.54
COPS3-214ENST00000577246 KDM2BQ8NHM5 1336 aa18.4■□□□□ 0.54
COPS3-214ENST00000577246 C4AP0C0L4 1744 aa18.4■□□□□ 0.54
COPS3-214ENST00000577246 C9orf131Q5VYM1 1079 aa18.39■□□□□ 0.53
COPS3-214ENST00000577246 DNAJC5GQ8N7S2 189 aa18.39■□□□□ 0.53
COPS3-214ENST00000577246 SLC4A9Q96Q91 983 aa18.39■□□□□ 0.53
COPS3-214ENST00000577246 KIAA1551Q9HCM1 1747 aa18.38■□□□□ 0.53
COPS3-214ENST00000577246 FSTL1Q12841 308 aa18.38■□□□□ 0.53
COPS3-214ENST00000577246 DALRD3Q5D0E6 543 aaKnown RBP18.38■□□□□ 0.53
COPS3-214ENST00000577246 TNNT2P45379 298 aaPredicted RBP18.37■□□□□ 0.53
COPS3-214ENST00000577246 C1orf141Q5JVX7 400 aa18.37■□□□□ 0.53
COPS3-214ENST00000577246 ZNF530Q6P9A1 599 aaPredicted RBP18.37■□□□□ 0.53
COPS3-214ENST00000577246 N4BP2Q86UW6 1770 aaPredicted RBP18.37■□□□□ 0.53
COPS3-214ENST00000577246 MTHFSP49914 203 aa18.36■□□□□ 0.53
COPS3-214ENST00000577246 KCNA3P22001 575 aa18.35■□□□□ 0.53
COPS3-214ENST00000577246 USP42Q9H9J4 1324 aaKnown RBP18.34■□□□□ 0.53
COPS3-214ENST00000577246 PTCD1O75127 700 aaKnown RBP18.34■□□□□ 0.53
COPS3-214ENST00000577246 CRKLP46109 303 aaKnown RBP18.34■□□□□ 0.53
COPS3-214ENST00000577246 TIMELESSQ9UNS1 1208 aa18.34■□□□□ 0.53
COPS3-214ENST00000577246 COL5A3P25940 1745 aaPredicted RBP18.34■□□□□ 0.53
COPS3-214ENST00000577246 KDM6AO15550 1401 aaPredicted RBP18.33■□□□□ 0.53
COPS3-214ENST00000577246 KLRG1Q96E93 195 aa18.33■□□□□ 0.52
COPS3-214ENST00000577246 POLR3GLQ9BT43 218 aa18.33■□□□□ 0.52
COPS3-214ENST00000577246 RNF181Q9P0P0 153 aa18.33■□□□□ 0.52
COPS3-214ENST00000577246 ZC3H4Q9UPT8 1303 aaKnown RBP18.31■□□□□ 0.52
COPS3-214ENST00000577246 FKBP8Q14318 412 aa18.31■□□□□ 0.52
COPS3-214ENST00000577246 KCPQ6ZWJ8 1503 aa18.3■□□□□ 0.52
COPS3-214ENST00000577246 WDR90Q96KV7 1748 aa18.3■□□□□ 0.52
COPS3-214ENST00000577246 ZPR1O75312 459 aa18.3■□□□□ 0.52
COPS3-214ENST00000577246 JMYQ8N9B5 988 aa18.3■□□□□ 0.52
COPS3-214ENST00000577246 NFATC2IPQ8NCF5 419 aa18.3■□□□□ 0.52
COPS3-214ENST00000577246 SRP68Q9UHB9 627 aaKnown RBP18.3■□□□□ 0.52
COPS3-214ENST00000577246 BRCA1P38398 1863 aaKnown RBP18.29■□□□□ 0.52
COPS3-214ENST00000577246 ARFGEF1Q9Y6D6 1849 aa18.29■□□□□ 0.52
COPS3-214ENST00000577246 DDR1Q08345 913 aa18.29■□□□□ 0.52
COPS3-214ENST00000577246 SMC1BQ8NDV3 1235 aa18.29■□□□□ 0.52
COPS3-214ENST00000577246 RRAGCQ9HB90 399 aa18.28■□□□□ 0.52
COPS3-214ENST00000577246 POLRMTO00411 1230 aaKnown RBP18.27■□□□□ 0.52
COPS3-214ENST00000577246 CHRNA5P30532 468 aa18.27■□□□□ 0.52
COPS3-214ENST00000577246 TM4SF1P30408 202 aa18.26■□□□□ 0.51
COPS3-214ENST00000577246 TNRC6CQ9HCJ0 1690 aaKnown RBP18.25■□□□□ 0.51
COPS3-214ENST00000577246 SULT6B1Q6IMI4 303 aa18.25■□□□□ 0.51
COPS3-214ENST00000577246 INTS5Q6P9B9 1019 aaKnown RBP18.25■□□□□ 0.51
COPS3-214ENST00000577246 MORC1Q86VD1 984 aa18.25■□□□□ 0.51
COPS3-214ENST00000577246 AEBP1Q8IUX7 1158 aa18.25■□□□□ 0.51
COPS3-214ENST00000577246 LMNB1P20700 586 aa18.24■□□□□ 0.51
COPS3-214ENST00000577246 HTRA3P83110 453 aa18.24■□□□□ 0.51
COPS3-214ENST00000577246 AKAP4Q5JQC9 854 aa18.24■□□□□ 0.51
COPS3-214ENST00000577246 USPL1Q5W0Q7 1092 aa18.24■□□□□ 0.51
COPS3-214ENST00000577246 PANK3Q9H999 370 aa18.24■□□□□ 0.51
COPS3-214ENST00000577246 SOS1Q07889 1333 aaPredicted RBP18.23■□□□□ 0.51
COPS3-214ENST00000577246 MYH14Q7Z406 1995 aaKnown RBP18.23■□□□□ 0.51
COPS3-214ENST00000577246 VEGFAP15692 232 aaPredicted RBP18.22■□□□□ 0.51
COPS3-214ENST00000577246 SLC52A2Q9HAB3 445 aa18.22■□□□□ 0.51
COPS3-214ENST00000577246 TJP1Q07157 1748 aa18.22■□□□□ 0.51
COPS3-214ENST00000577246 GLTPD2A6NH11 291 aa18.21■□□□□ 0.51
COPS3-214ENST00000577246 EIF4G2P78344 907 aaKnown RBP eCLIP18.21■□□□□ 0.51
COPS3-214ENST00000577246 COL13A1Q5TAT6 717 aaPredicted RBP18.21■□□□□ 0.51
COPS3-214ENST00000577246 DNAJC10Q8IXB1 793 aa18.21■□□□□ 0.51
COPS3-214ENST00000577246 TTLL6Q8N841 843 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms