RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 TNS4Q8IZW8 715 aa19.43■□□□□ 0.7
CIITA-211ENST00000576601 BCS1LQ9Y276 419 aa19.43■□□□□ 0.7
CIITA-211ENST00000576601 CCDC88AQ3V6T2 1871 aa19.43■□□□□ 0.7
CIITA-211ENST00000576601 INSRP06213 1382 aa19.43■□□□□ 0.7
CIITA-211ENST00000576601 PLEKHG2Q9H7P9 1386 aa19.43■□□□□ 0.7
CIITA-211ENST00000576601 LOC102724428A0A0B4J2F2 783 aa19.42■□□□□ 0.7
CIITA-211ENST00000576601 A0A0G2JLW4 131 aa19.42■□□□□ 0.7
CIITA-211ENST00000576601 SIK1P57059 783 aa19.42■□□□□ 0.7
CIITA-211ENST00000576601 PUS7Q96PZ0 661 aaKnown RBP19.42■□□□□ 0.7
CIITA-211ENST00000576601 GNPATO15228 680 aa19.41■□□□□ 0.7
CIITA-211ENST00000576601 KDRP35968 1356 aa19.41■□□□□ 0.7
CIITA-211ENST00000576601 TGFB2P61812 414 aa19.4■□□□□ 0.7
CIITA-211ENST00000576601 FSTL1Q12841 308 aa19.4■□□□□ 0.7
CIITA-211ENST00000576601 TIAM2Q8IVF5 1701 aa19.39■□□□□ 0.7
CIITA-211ENST00000576601 HSP90AB2PQ58FF8 381 aa19.39■□□□□ 0.69
CIITA-211ENST00000576601 ARHGAP27Q6ZUM4 889 aa19.39■□□□□ 0.69
CIITA-211ENST00000576601 DPEP1P16444 411 aa19.38■□□□□ 0.69
CIITA-211ENST00000576601 FLT4P35916 1363 aa19.38■□□□□ 0.69
CIITA-211ENST00000576601 NKX1-1Q15270 411 aaPredicted RBP19.38■□□□□ 0.69
CIITA-211ENST00000576601 C9orf131Q5VYM1 1079 aa19.38■□□□□ 0.69
CIITA-211ENST00000576601 TESK2Q96S53 571 aa19.38■□□□□ 0.69
CIITA-211ENST00000576601 DLEC1Q9Y238 1755 aa19.37■□□□□ 0.69
CIITA-211ENST00000576601 ADAMTS7Q9UKP4 1686 aa19.37■□□□□ 0.69
CIITA-211ENST00000576601 KCNA3P22001 575 aa19.37■□□□□ 0.69
CIITA-211ENST00000576601 ASAP1Q9ULH1 1129 aa19.37■□□□□ 0.69
CIITA-211ENST00000576601 KIF24Q5T7B8 1368 aa19.35■□□□□ 0.69
CIITA-211ENST00000576601 FYB1O15117 783 aa19.35■□□□□ 0.69
CIITA-211ENST00000576601 FCHSD2O94868 740 aa19.35■□□□□ 0.69
CIITA-211ENST00000576601 AFDNP55196 1824 aaKnown RBP19.35■□□□□ 0.69
CIITA-211ENST00000576601 ST20-MTHFSA0A0A6YYL1 179 aa19.34■□□□□ 0.69
CIITA-211ENST00000576601 C16orf71Q8IYS4 520 aaPredicted RBP19.34■□□□□ 0.69
CIITA-211ENST00000576601 GGNBP2Q9H3C7 697 aa19.34■□□□□ 0.69
CIITA-211ENST00000576601 SLC4A9Q96Q91 983 aa19.33■□□□□ 0.68
CIITA-211ENST00000576601 TJP1Q07157 1748 aa19.33■□□□□ 0.68
CIITA-211ENST00000576601 GYS1P13807 737 aa19.32■□□□□ 0.68
CIITA-211ENST00000576601 ATP6V1AP38606 617 aa19.32■□□□□ 0.68
CIITA-211ENST00000576601 DCAF5Q96JK2 942 aa19.32■□□□□ 0.68
CIITA-211ENST00000576601 KDM2BQ8NHM5 1336 aa19.31■□□□□ 0.68
CIITA-211ENST00000576601 HSPA1AP0DMV8 641 aaKnown RBP19.31■□□□□ 0.68
CIITA-211ENST00000576601 HSPA1BP0DMV9 641 aaKnown RBP19.31■□□□□ 0.68
CIITA-211ENST00000576601 TMF1P82094 1093 aa19.31■□□□□ 0.68
CIITA-211ENST00000576601 ATG3Q9NT62 314 aa19.31■□□□□ 0.68
CIITA-211ENST00000576601 KDM6AO15550 1401 aaPredicted RBP19.31■□□□□ 0.68
CIITA-211ENST00000576601 NLGN1Q8N2Q7 840 aa19.3■□□□□ 0.68
CIITA-211ENST00000576601 RRAGCQ9HB90 399 aa19.3■□□□□ 0.68
CIITA-211ENST00000576601 CCDC87Q9NVE4 849 aa19.3■□□□□ 0.68
CIITA-211ENST00000576601 TMOD3Q9NYL9 352 aa19.3■□□□□ 0.68
CIITA-211ENST00000576601 DICER1Q9UPY3 1922 aaKnown RBP19.29■□□□□ 0.68
CIITA-211ENST00000576601 ARHGEF1Q92888 912 aaKnown RBP19.29■□□□□ 0.68
CIITA-211ENST00000576601 RNF181Q9P0P0 153 aa19.29■□□□□ 0.68
CIITA-211ENST00000576601 NRXN2Q9P2S2 1712 aa19.28■□□□□ 0.68
CIITA-211ENST00000576601 TRIM26Q12899 539 aaPredicted RBP19.28■□□□□ 0.68
CIITA-211ENST00000576601 RTCBQ9Y3I0 505 aaKnown RBP19.28■□□□□ 0.68
CIITA-211ENST00000576601 TRAPPC3LQ5T215 181 aa19.27■□□□□ 0.68
CIITA-211ENST00000576601 SMC1BQ8NDV3 1235 aa19.27■□□□□ 0.68
CIITA-211ENST00000576601 EMILIN1Q9Y6C2 1016 aa19.27■□□□□ 0.68
CIITA-211ENST00000576601 CNTNAP4Q9C0A0 1308 aa19.26■□□□□ 0.67
CIITA-211ENST00000576601 ADRA2BP18089 450 aa19.26■□□□□ 0.67
CIITA-211ENST00000576601 PHKG2P15735 406 aa19.25■□□□□ 0.67
CIITA-211ENST00000576601 PIM2Q9P1W9 311 aa19.25■□□□□ 0.67
CIITA-211ENST00000576601 SPG7Q9UQ90 795 aa19.25■□□□□ 0.67
CIITA-211ENST00000576601 VIRMAQ69YN4 1812 aaKnown RBP19.24■□□□□ 0.67
CIITA-211ENST00000576601 DDR1Q08345 913 aa19.24■□□□□ 0.67
CIITA-211ENST00000576601 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.24■□□□□ 0.67
CIITA-211ENST00000576601 PARP3Q9Y6F1 533 aa19.24■□□□□ 0.67
CIITA-211ENST00000576601 DALRD3Q5D0E6 543 aaKnown RBP19.23■□□□□ 0.67
CIITA-211ENST00000576601 RC3H1Q5TC82 1133 aaKnown RBP19.23■□□□□ 0.67
CIITA-211ENST00000576601 RPS6KA4O75676 772 aa19.22■□□□□ 0.67
CIITA-211ENST00000576601 SLC34A2O95436 690 aa19.22■□□□□ 0.67
CIITA-211ENST00000576601 RASSF7Q02833 373 aa19.22■□□□□ 0.67
CIITA-211ENST00000576601 ZC3H4Q9UPT8 1303 aaKnown RBP19.22■□□□□ 0.67
CIITA-211ENST00000576601 CHRNA5P30532 468 aa19.21■□□□□ 0.67
CIITA-211ENST00000576601 FER1L6Q2WGJ9 1857 aa19.21■□□□□ 0.67
CIITA-211ENST00000576601 EYA1Q99502 592 aa19.21■□□□□ 0.67
CIITA-211ENST00000576601 SCN11AQ9UI33 1791 aa19.2■□□□□ 0.66
CIITA-211ENST00000576601 RFC4P35249 363 aa19.2■□□□□ 0.66
CIITA-211ENST00000576601 IFNL2Q8IZJ0 200 aa19.2■□□□□ 0.66
CIITA-211ENST00000576601 SRP68Q9UHB9 627 aaKnown RBP19.2■□□□□ 0.66
CIITA-211ENST00000576601 ANKRD31Q8N7Z5 1873 aa19.2■□□□□ 0.66
CIITA-211ENST00000576601 TNRC18O15417 2968 aaPredicted RBP19.19■□□□□ 0.66
CIITA-211ENST00000576601 FKBP8Q14318 412 aa19.19■□□□□ 0.66
CIITA-211ENST00000576601 USP42Q9H9J4 1324 aaKnown RBP19.19■□□□□ 0.66
CIITA-211ENST00000576601 COL11A2P13942 1736 aaPredicted RBP19.17■□□□□ 0.66
CIITA-211ENST00000576601 RBM42Q9BTD8 480 aaKnown RBP19.17■□□□□ 0.66
CIITA-211ENST00000576601 CACNA1SQ13698 1873 aa19.17■□□□□ 0.66
CIITA-211ENST00000576601 WASHC2AQ641Q2 1341 aa19.17■□□□□ 0.66
CIITA-211ENST00000576601 GLTPD2A6NH11 291 aa19.16■□□□□ 0.66
CIITA-211ENST00000576601 POTECB2RU33 542 aa19.15■□□□□ 0.66
CIITA-211ENST00000576601 POLRMTO00411 1230 aaKnown RBP19.15■□□□□ 0.66
CIITA-211ENST00000576601 VEGFAP15692 232 aaPredicted RBP19.15■□□□□ 0.66
CIITA-211ENST00000576601 CARD14Q9BXL6 1004 aa19.15■□□□□ 0.66
CIITA-211ENST00000576601 ERVV-2B6SEH9 535 aa19.13■□□□□ 0.65
CIITA-211ENST00000576601 LMNB1P20700 586 aa19.13■□□□□ 0.65
CIITA-211ENST00000576601 CRKLP46109 303 aaKnown RBP19.13■□□□□ 0.65
CIITA-211ENST00000576601 PPM1GO15355 546 aaPredicted RBP19.12■□□□□ 0.65
CIITA-211ENST00000576601 TM4SF1P30408 202 aa19.11■□□□□ 0.65
CIITA-211ENST00000576601 ARFGEF2Q9Y6D5 1785 aa19.11■□□□□ 0.65
CIITA-211ENST00000576601 NFKBIEO00221 500 aa19.1■□□□□ 0.65
CIITA-211ENST00000576601 FOXN1O15353 648 aa19.1■□□□□ 0.65
CIITA-211ENST00000576601 CARMIL3Q8ND23 1372 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms