RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PLEKHG2Q9H7P9 1386 aa18.72■□□□□ 0.59
CCDC40-216ENST00000576241 IFNL2Q8IZJ0 200 aa18.72■□□□□ 0.59
CCDC40-216ENST00000576241 PIGBQ92521 554 aa18.72■□□□□ 0.59
CCDC40-216ENST00000576241 TMOD3Q9NYL9 352 aa18.72■□□□□ 0.59
CCDC40-216ENST00000576241 SLC34A2O95436 690 aa18.71■□□□□ 0.59
CCDC40-216ENST00000576241 PHKG2P15735 406 aa18.71■□□□□ 0.59
CCDC40-216ENST00000576241 NMRK2Q9NPI5 230 aa18.71■□□□□ 0.59
CCDC40-216ENST00000576241 PCNTO95613 3336 aa18.71■□□□□ 0.59
CCDC40-216ENST00000576241 TOGARAM1Q9Y4F4 1720 aa18.71■□□□□ 0.59
CCDC40-216ENST00000576241 FLAD1Q8NFF5 587 aa18.7■□□□□ 0.58
CCDC40-216ENST00000576241 AK7Q96M32 723 aa18.69■□□□□ 0.58
CCDC40-216ENST00000576241 C5P01031 1676 aa18.69■□□□□ 0.58
CCDC40-216ENST00000576241 CICQ96RK0 1608 aaPredicted RBP18.68■□□□□ 0.58
CCDC40-216ENST00000576241 RBM46Q8TBY0 533 aaKnown RBP18.67■□□□□ 0.58
CCDC40-216ENST00000576241 KIF7Q2M1P5 1343 aa18.67■□□□□ 0.58
CCDC40-216ENST00000576241 ITGB4P16144 1822 aa18.67■□□□□ 0.58
CCDC40-216ENST00000576241 LOC102724428A0A0B4J2F2 783 aa18.66■□□□□ 0.58
CCDC40-216ENST00000576241 HSP90AB1P08238 724 aaKnown RBP18.66■□□□□ 0.58
CCDC40-216ENST00000576241 SIK1P57059 783 aa18.66■□□□□ 0.58
CCDC40-216ENST00000576241 PLEKHO1Q53GL0 409 aaPredicted RBP18.66■□□□□ 0.58
CCDC40-216ENST00000576241 ASAP1Q9ULH1 1129 aa18.65■□□□□ 0.58
CCDC40-216ENST00000576241 C4BP0C0L5 1744 aa18.64■□□□□ 0.57
CCDC40-216ENST00000576241 AMOTQ4VCS5 1084 aa18.64■□□□□ 0.57
CCDC40-216ENST00000576241 AMER1Q5JTC6 1135 aaPredicted RBP18.64■□□□□ 0.57
CCDC40-216ENST00000576241 DCAF5Q96JK2 942 aa18.64■□□□□ 0.57
CCDC40-216ENST00000576241 ERVV-2B6SEH9 535 aa18.63■□□□□ 0.57
CCDC40-216ENST00000576241 PHF14O94880 888 aa18.63■□□□□ 0.57
CCDC40-216ENST00000576241 ZNF530Q6P9A1 599 aaPredicted RBP18.63■□□□□ 0.57
CCDC40-216ENST00000576241 C1orf141Q5JVX7 400 aa18.62■□□□□ 0.57
CCDC40-216ENST00000576241 C16orf71Q8IYS4 520 aaPredicted RBP18.62■□□□□ 0.57
CCDC40-216ENST00000576241 TAF1LQ8IZX4 1826 aa18.62■□□□□ 0.57
CCDC40-216ENST00000576241 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.61■□□□□ 0.57
CCDC40-216ENST00000576241 SSFA2P28290 1259 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 ATP6V1AP38606 617 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 FSTL1Q12841 308 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 SULT6B1Q6IMI4 303 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 AEBP1Q8IUX7 1158 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 LINC00116Q8NCU8 138 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 ATG3Q9NT62 314 aa18.61■□□□□ 0.57
CCDC40-216ENST00000576241 AMIGO3Q86WK7 504 aa18.6■□□□□ 0.57
CCDC40-216ENST00000576241 GNPATO15228 680 aa18.59■□□□□ 0.57
CCDC40-216ENST00000576241 HSPA1AP0DMV8 641 aaKnown RBP18.59■□□□□ 0.57
CCDC40-216ENST00000576241 HSPA1BP0DMV9 641 aaKnown RBP18.59■□□□□ 0.57
CCDC40-216ENST00000576241 IL13P35225 146 aa18.59■□□□□ 0.57
CCDC40-216ENST00000576241 MTHFSP49914 203 aa18.59■□□□□ 0.57
CCDC40-216ENST00000576241 CABP4P57796 275 aa18.59■□□□□ 0.57
CCDC40-216ENST00000576241 ITPK1Q13572 414 aa18.59■□□□□ 0.57
CCDC40-216ENST00000576241 SMIM5Q71RC9 77 aa18.58■□□□□ 0.56
CCDC40-216ENST00000576241 RBM42Q9BTD8 480 aaKnown RBP18.58■□□□□ 0.56
CCDC40-216ENST00000576241 KDM6AO15550 1401 aaPredicted RBP18.57■□□□□ 0.56
CCDC40-216ENST00000576241 KDRP35968 1356 aa18.57■□□□□ 0.56
CCDC40-216ENST00000576241 ARHGAP27Q6ZUM4 889 aa18.57■□□□□ 0.56
CCDC40-216ENST00000576241 CC2D1BQ5T0F9 858 aaKnown RBP18.56■□□□□ 0.56
CCDC40-216ENST00000576241 BCS1LQ9Y276 419 aa18.56■□□□□ 0.56
CCDC40-216ENST00000576241 PER1O15534 1290 aaPredicted RBP18.55■□□□□ 0.56
CCDC40-216ENST00000576241 N4BP2Q86UW6 1770 aaPredicted RBP18.55■□□□□ 0.56
CCDC40-216ENST00000576241 UBR3Q6ZT12 1888 aa18.54■□□□□ 0.56
CCDC40-216ENST00000576241 PXDNLA1KZ92 1463 aa18.54■□□□□ 0.56
CCDC40-216ENST00000576241 RTCBQ9Y3I0 505 aaKnown RBP18.54■□□□□ 0.56
CCDC40-216ENST00000576241 KIAA1551Q9HCM1 1747 aa18.54■□□□□ 0.56
CCDC40-216ENST00000576241 AKAP4Q5JQC9 854 aa18.52■□□□□ 0.56
CCDC40-216ENST00000576241 C9orf131Q5VYM1 1079 aa18.52■□□□□ 0.56
CCDC40-216ENST00000576241 KCPQ6ZWJ8 1503 aa18.52■□□□□ 0.56
CCDC40-216ENST00000576241 KIF13BQ9NQT8 1826 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 A0A0G2JLW4 131 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 DIAPH1O60610 1272 aaKnown RBP18.51■□□□□ 0.55
CCDC40-216ENST00000576241 PTCD1O75127 700 aaKnown RBP18.51■□□□□ 0.55
CCDC40-216ENST00000576241 HMOX1P09601 288 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 NFATC2IPQ8NCF5 419 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 SLC4A9Q96Q91 983 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 RRAGCQ9HB90 399 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 NPC1L1Q9UHC9 1359 aa18.51■□□□□ 0.55
CCDC40-216ENST00000576241 CNTNAP4Q9C0A0 1308 aa18.5■□□□□ 0.55
CCDC40-216ENST00000576241 ADRA2BP18089 450 aa18.5■□□□□ 0.55
CCDC40-216ENST00000576241 CNGB1Q14028 1251 aaPredicted RBP18.5■□□□□ 0.55
CCDC40-216ENST00000576241 TRAPPC3LQ5T215 181 aa18.5■□□□□ 0.55
CCDC40-216ENST00000576241 RC3H1Q5TC82 1133 aaKnown RBP18.5■□□□□ 0.55
CCDC40-216ENST00000576241 ZNF831Q5JPB2 1677 aa18.5■□□□□ 0.55
CCDC40-216ENST00000576241 KDM2BQ8NHM5 1336 aa18.49■□□□□ 0.55
CCDC40-216ENST00000576241 MMP10P09238 476 aa18.48■□□□□ 0.55
CCDC40-216ENST00000576241 TGFB2P61812 414 aa18.48■□□□□ 0.55
CCDC40-216ENST00000576241 SMC1BQ8NDV3 1235 aa18.48■□□□□ 0.55
CCDC40-216ENST00000576241 C10orf71Q711Q0 1435 aa18.48■□□□□ 0.55
CCDC40-216ENST00000576241 RPS6KA4O75676 772 aa18.47■□□□□ 0.55
CCDC40-216ENST00000576241 FCHSD2O94868 740 aa18.47■□□□□ 0.55
CCDC40-216ENST00000576241 RFC4P35249 363 aa18.47■□□□□ 0.55
CCDC40-216ENST00000576241 NLGN1Q8N2Q7 840 aa18.47■□□□□ 0.55
CCDC40-216ENST00000576241 ARHGEF1Q92888 912 aaKnown RBP18.46■□□□□ 0.55
CCDC40-216ENST00000576241 SLC52A2Q9HAB3 445 aa18.46■□□□□ 0.55
CCDC40-216ENST00000576241 PCDH10Q9P2E7 1040 aa18.46■□□□□ 0.55
CCDC40-216ENST00000576241 TNRC6CQ9HCJ0 1690 aaKnown RBP18.45■□□□□ 0.54
CCDC40-216ENST00000576241 DPEP1P16444 411 aa18.45■□□□□ 0.54
CCDC40-216ENST00000576241 CRKLP46109 303 aaKnown RBP18.45■□□□□ 0.54
CCDC40-216ENST00000576241 BRCA1P38398 1863 aaKnown RBP18.45■□□□□ 0.54
CCDC40-216ENST00000576241 COL5A3P25940 1745 aaPredicted RBP18.44■□□□□ 0.54
CCDC40-216ENST00000576241 U2SURPO15042 1029 aaKnown RBP18.44■□□□□ 0.54
CCDC40-216ENST00000576241 RNMTO43148 476 aaKnown RBP18.44■□□□□ 0.54
CCDC40-216ENST00000576241 MTHFSDQ2M296 383 aaKnown RBP18.44■□□□□ 0.54
CCDC40-216ENST00000576241 LGR6Q9HBX8 967 aa18.44■□□□□ 0.54
CCDC40-216ENST00000576241 SCN11AQ9UI33 1791 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms