RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 EVC2Q86UK5 1308 aa23.59■■□□□ 1.37
VPS53-218ENST00000575207 GNPATO15228 680 aa23.59■■□□□ 1.37
VPS53-218ENST00000575207 TMF1P82094 1093 aa23.59■■□□□ 1.37
VPS53-218ENST00000575207 CGNL1Q0VF96 1302 aa23.59■■□□□ 1.37
VPS53-218ENST00000575207 C4AP0C0L4 1744 aa23.57■■□□□ 1.36
VPS53-218ENST00000575207 CHADLQ6NUI6 762 aa23.57■■□□□ 1.36
VPS53-218ENST00000575207 NME9Q86XW9 330 aa23.57■■□□□ 1.36
VPS53-218ENST00000575207 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.57■■□□□ 1.364e-6■■■■□ 21.2
VPS53-218ENST00000575207 MAP2P11137 1827 aaKnown RBP23.55■■□□□ 1.36
VPS53-218ENST00000575207 VIRMAQ69YN4 1812 aaKnown RBP23.55■■□□□ 1.36
VPS53-218ENST00000575207 LOC102724428A0A0B4J2F2 783 aa23.55■■□□□ 1.36
VPS53-218ENST00000575207 LMNB1P20700 586 aa23.55■■□□□ 1.36
VPS53-218ENST00000575207 SIK1P57059 783 aa23.55■■□□□ 1.36
VPS53-218ENST00000575207 PARP3Q9Y6F1 533 aa23.54■■□□□ 1.36
VPS53-218ENST00000575207 RASSF7Q02833 373 aa23.53■■□□□ 1.36
VPS53-218ENST00000575207 MON2Q7Z3U7 1717 aa23.53■■□□□ 1.36
VPS53-218ENST00000575207 TRAPPC3LQ5T215 181 aa23.51■■□□□ 1.35
VPS53-218ENST00000575207 PASKQ96RG2 1323 aa23.51■■□□□ 1.35
VPS53-218ENST00000575207 SBNO2Q9Y2G9 1366 aa23.51■■□□□ 1.35
VPS53-218ENST00000575207 GYS1P13807 737 aa23.5■■□□□ 1.35
VPS53-218ENST00000575207 ITPK1Q13572 414 aa23.5■■□□□ 1.35
VPS53-218ENST00000575207 PIGBQ92521 554 aa23.5■■□□□ 1.35
VPS53-218ENST00000575207 MAP2K1Q02750 393 aaPredicted RBP23.49■■□□□ 1.35
VPS53-218ENST00000575207 PCDH11XQ9BZA7 1347 aa23.49■■□□□ 1.35
VPS53-218ENST00000575207 PCDH11YQ9BZA8 1340 aa23.49■■□□□ 1.35
VPS53-218ENST00000575207 DPY19L2Q6NUT2 758 aa23.47■■□□□ 1.35
VPS53-218ENST00000575207 RTCBQ9Y3I0 505 aaKnown RBP23.47■■□□□ 1.35
VPS53-218ENST00000575207 CD163L1Q9NR16 1453 aa23.47■■□□□ 1.35
VPS53-218ENST00000575207 ITGB4P16144 1822 aa23.47■■□□□ 1.35
VPS53-218ENST00000575207 TMEM88BA6NKF7 163 aa23.46■■□□□ 1.35
VPS53-218ENST00000575207 RGPD2P0DJD1 1756 aa23.46■■□□□ 1.35
VPS53-218ENST00000575207 CHRNA5P30532 468 aa23.46■■□□□ 1.35
VPS53-218ENST00000575207 HOXC9P31274 260 aa23.46■■□□□ 1.35
VPS53-218ENST00000575207 RAPGEF4Q8WZA2 1011 aa23.46■■□□□ 1.35
VPS53-218ENST00000575207 POTEIP0CG38 1075 aa23.45■■□□□ 1.34
VPS53-218ENST00000575207 POTEJP0CG39 1038 aa23.45■■□□□ 1.34
VPS53-218ENST00000575207 ADRA2BP18089 450 aa23.45■■□□□ 1.34
VPS53-218ENST00000575207 ARHGEF1Q92888 912 aaKnown RBP23.45■■□□□ 1.34
VPS53-218ENST00000575207 CYP27B1O15528 508 aa23.44■■□□□ 1.34
VPS53-218ENST00000575207 ATP6V1AP38606 617 aa23.44■■□□□ 1.34
VPS53-218ENST00000575207 NBPF6Q5VWK0 638 aa23.44■■□□□ 1.34
VPS53-218ENST00000575207 NBPF4Q96M43 638 aa23.44■■□□□ 1.34
VPS53-218ENST00000575207 TIAM2Q8IVF5 1701 aa23.42■■□□□ 1.34
VPS53-218ENST00000575207 RASSF10A6NK89 507 aa23.42■■□□□ 1.34
VPS53-218ENST00000575207 TATP17735 454 aaPredicted RBP23.42■■□□□ 1.34
VPS53-218ENST00000575207 CFAP44Q96MT7 982 aa23.42■■□□□ 1.34
VPS53-218ENST00000575207 MAP3K19Q56UN5 1328 aa23.41■■□□□ 1.34
VPS53-218ENST00000575207 PRPF38BQ5VTL8 546 aaKnown RBP23.4■■□□□ 1.34
VPS53-218ENST00000575207 RFC4P35249 363 aa23.39■■□□□ 1.33
VPS53-218ENST00000575207 DEFB115Q30KQ5 88 aa23.38■■□□□ 1.33
VPS53-218ENST00000575207 USHBP1Q8N6Y0 703 aa23.38■■□□□ 1.33
VPS53-218ENST00000575207 WDR33Q9C0J8 1336 aaKnown RBP23.37■■□□□ 1.33
VPS53-218ENST00000575207 ITGBL1O95965 494 aaPredicted RBP23.37■■□□□ 1.33
VPS53-218ENST00000575207 AMPHP49418 695 aa23.37■■□□□ 1.33
VPS53-218ENST00000575207 NKX1-1Q15270 411 aaPredicted RBP23.37■■□□□ 1.33
VPS53-218ENST00000575207 ASAP1Q9ULH1 1129 aa23.37■■□□□ 1.33
VPS53-218ENST00000575207 EDC4Q6P2E9 1401 aaKnown RBP23.36■■□□□ 1.33
VPS53-218ENST00000575207 DDR1Q08345 913 aa23.36■■□□□ 1.33
VPS53-218ENST00000575207 RC3H1Q5TC82 1133 aaKnown RBP23.36■■□□□ 1.33
VPS53-218ENST00000575207 LDHDQ86WU2 507 aa23.36■■□□□ 1.33
VPS53-218ENST00000575207 MCOLN1Q9GZU1 580 aa23.36■■□□□ 1.33
VPS53-218ENST00000575207 CCDC88AQ3V6T2 1871 aa23.36■■□□□ 1.33
VPS53-218ENST00000575207 NFKBIEO00221 500 aa23.35■■□□□ 1.33
VPS53-218ENST00000575207 RPS6KA4O75676 772 aa23.34■■□□□ 1.33
VPS53-218ENST00000575207 KDRP35968 1356 aa23.31■■□□□ 1.32
VPS53-218ENST00000575207 BEGAINQ9BUH8 593 aa23.31■■□□□ 1.32
VPS53-218ENST00000575207 TMOD3Q9NYL9 352 aa23.31■■□□□ 1.32
VPS53-218ENST00000575207 CNTNAP4Q9C0A0 1308 aa23.31■■□□□ 1.32
VPS53-218ENST00000575207 RTL1A6NKG5 1358 aa23.3■■□□□ 1.32
VPS53-218ENST00000575207 HDGFL2Q7Z4V5 671 aaPredicted RBP23.3■■□□□ 1.32
VPS53-218ENST00000575207 ATG3Q9NT62 314 aa23.3■■□□□ 1.32
VPS53-218ENST00000575207 SMG6Q86US8 1419 aaKnown RBP23.3■■□□□ 1.32
VPS53-218ENST00000575207 FKBP8Q14318 412 aa23.29■■□□□ 1.32
VPS53-218ENST00000575207 POLRMTO00411 1230 aaKnown RBP23.28■■□□□ 1.32
VPS53-218ENST00000575207 DDNO94850 711 aaPredicted RBP23.28■■□□□ 1.32
VPS53-218ENST00000575207 FBLN1P23142 703 aa23.28■■□□□ 1.32
VPS53-218ENST00000575207 ERFEQ4G0M1 354 aa23.28■■□□□ 1.32
VPS53-218ENST00000575207 TTLL6Q8N841 843 aa23.28■■□□□ 1.32
VPS53-218ENST00000575207 SLC4A9Q96Q91 983 aa23.28■■□□□ 1.32
VPS53-218ENST00000575207 THSD7BQ9C0I4 1608 aa23.28■■□□□ 1.32
VPS53-218ENST00000575207 IQCA1LA6NCM1 817 aa23.27■■□□□ 1.32
VPS53-218ENST00000575207 DICER1Q9UPY3 1922 aaKnown RBP23.25■■□□□ 1.31
VPS53-218ENST00000575207 ZNF831Q5JPB2 1677 aa23.25■■□□□ 1.31
VPS53-218ENST00000575207 TM4SF1P30408 202 aa23.25■■□□□ 1.31
VPS53-218ENST00000575207 TAF1DQ9H5J8 278 aaPredicted RBP23.25■■□□□ 1.31
VPS53-218ENST00000575207 USP42Q9H9J4 1324 aaKnown RBP23.25■■□□□ 1.31
VPS53-218ENST00000575207 RAB3GAP2Q9H2M9 1393 aa23.24■■□□□ 1.31
VPS53-218ENST00000575207 COG3Q96JB2 828 aa23.23■■□□□ 1.31
VPS53-218ENST00000575207 L3MBTL3Q96JM7 780 aaPredicted RBP23.23■■□□□ 1.31
VPS53-218ENST00000575207 SLC12A5Q9H2X9 1139 aa23.23■■□□□ 1.31
VPS53-218ENST00000575207 SRP68Q9UHB9 627 aaKnown RBP23.23■■□□□ 1.31
VPS53-218ENST00000575207 COL5A3P25940 1745 aaPredicted RBP23.22■■□□□ 1.31
VPS53-218ENST00000575207 TMC1Q8TDI8 760 aa23.21■■□□□ 1.31
VPS53-218ENST00000575207 TSKSQ9UJT2 592 aa23.21■■□□□ 1.31
VPS53-218ENST00000575207 A0A1W2PP64 1363 aa23.21■■□□□ 1.31
VPS53-218ENST00000575207 MYH14Q7Z406 1995 aaKnown RBP23.21■■□□□ 1.31
VPS53-218ENST00000575207 SCN4AP35499 1836 aa23.2■■□□□ 1.3
VPS53-218ENST00000575207 DLEC1Q9Y238 1755 aa23.2■■□□□ 1.3
VPS53-218ENST00000575207 DGKZQ13574 1117 aa23.2■■□□□ 1.3
VPS53-218ENST00000575207 CAPNS2Q96L46 248 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms