RNA–Protein interactions for RNA: ENST00000575176.5

SMG6-216, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 557 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-216ENST00000575176 ATG3Q9NT62 314 aa11.73□□□□□ -0.53
SMG6-216ENST00000575176 ASAP1Q9ULH1 1129 aa11.73□□□□□ -0.53
SMG6-216ENST00000575176 MAP3K5Q99683 1374 aa11.72□□□□□ -0.53
SMG6-216ENST00000575176 ZEB1P37275 1124 aaPredicted RBP11.72□□□□□ -0.53
SMG6-216ENST00000575176 ITPK1Q13572 414 aa11.72□□□□□ -0.53
SMG6-216ENST00000575176 PLEKHO1Q53GL0 409 aaPredicted RBP11.72□□□□□ -0.53
SMG6-216ENST00000575176 MPRIPQ6WCQ1 1025 aa11.72□□□□□ -0.53
SMG6-216ENST00000575176 ERVV-2B6SEH9 535 aa11.71□□□□□ -0.53
SMG6-216ENST00000575176 PTGER2P43116 358 aa11.71□□□□□ -0.53
SMG6-216ENST00000575176 AKAP4Q5JQC9 854 aa11.71□□□□□ -0.53
SMG6-216ENST00000575176 LINC00116Q8NCU8 138 aa11.7□□□□□ -0.54
SMG6-216ENST00000575176 PLEKHF1Q96S99 279 aa11.7□□□□□ -0.54
SMG6-216ENST00000575176 LGR6Q9HBX8 967 aa11.7□□□□□ -0.54
SMG6-216ENST00000575176 TMOD3Q9NYL9 352 aa11.7□□□□□ -0.54
SMG6-216ENST00000575176 CCNL1Q9UK58 526 aaPredicted RBP11.7□□□□□ -0.54
SMG6-216ENST00000575176 BRCA1P38398 1863 aaKnown RBP11.7□□□□□ -0.54
SMG6-216ENST00000575176 MYBBP1AQ9BQG0 1328 aaKnown RBP11.69□□□□□ -0.54
SMG6-216ENST00000575176 PRKAR2BP31323 418 aa11.69□□□□□ -0.54
SMG6-216ENST00000575176 PRKRIP1Q9H875 184 aaPredicted RBP11.69□□□□□ -0.54
SMG6-216ENST00000575176 NRXN2Q9P2S2 1712 aa11.69□□□□□ -0.54
SMG6-216ENST00000575176 LOC102724428A0A0B4J2F2 783 aa11.68□□□□□ -0.54
SMG6-216ENST00000575176 U2SURPO15042 1029 aaKnown RBP11.68□□□□□ -0.54
SMG6-216ENST00000575176 RNMTO43148 476 aaKnown RBP11.68□□□□□ -0.54
SMG6-216ENST00000575176 HSP90AB1P08238 724 aaKnown RBP11.68□□□□□ -0.54
SMG6-216ENST00000575176 SIK1P57059 783 aa11.68□□□□□ -0.54
SMG6-216ENST00000575176 RALBP1Q15311 655 aa11.68□□□□□ -0.54
SMG6-216ENST00000575176 NBPF14Q5TI25 921 aa11.68□□□□□ -0.54
SMG6-216ENST00000575176 SLC52A2Q9HAB3 445 aa11.68□□□□□ -0.54
SMG6-216ENST00000575176 IL17REQ8NFR9 667 aa11.67□□□□□ -0.54
SMG6-216ENST00000575176 STK32BQ9NY57 414 aa11.67□□□□□ -0.54
SMG6-216ENST00000575176 AFDNP55196 1824 aaKnown RBP11.67□□□□□ -0.54
SMG6-216ENST00000575176 SMIM5Q71RC9 77 aa11.66□□□□□ -0.54
SMG6-216ENST00000575176 NFATC2IPQ8NCF5 419 aa11.66□□□□□ -0.54
SMG6-216ENST00000575176 SMARCC1Q92922 1105 aaPredicted RBP11.66□□□□□ -0.54
SMG6-216ENST00000575176 CFAP53Q96M91 514 aa11.66□□□□□ -0.54
SMG6-216ENST00000575176 FCHSD2O94868 740 aa11.65□□□□□ -0.54
SMG6-216ENST00000575176 ZBTB7AO95365 584 aa11.65□□□□□ -0.54
SMG6-216ENST00000575176 C1orf141Q5JVX7 400 aa11.65□□□□□ -0.54
SMG6-216ENST00000575176 COL23A1Q86Y22 540 aaPredicted RBP11.65□□□□□ -0.54
SMG6-216ENST00000575176 DLEC1Q9Y238 1755 aa11.64□□□□□ -0.55
SMG6-216ENST00000575176 CNTNAP4Q9C0A0 1308 aa11.64□□□□□ -0.55
SMG6-216ENST00000575176 U2AF1L5P0DN76 240 aaPredicted RBP11.64□□□□□ -0.55
SMG6-216ENST00000575176 U2AF1Q01081 240 aaKnown RBP eCLIP11.64□□□□□ -0.55
SMG6-216ENST00000575176 GAS2L2Q8NHY3 880 aa11.64□□□□□ -0.55
SMG6-216ENST00000575176 ZNF316A6NFI3 1004 aaPredicted RBP11.63□□□□□ -0.55
SMG6-216ENST00000575176 CCDC184Q52MB2 194 aa11.63□□□□□ -0.55
SMG6-216ENST00000575176 MTFR1LQ9H019 292 aa11.63□□□□□ -0.55
SMG6-216ENST00000575176 ANKRD31Q8N7Z5 1873 aa11.62□□□□□ -0.55
SMG6-216ENST00000575176 GNAT3A8MTJ3 354 aa11.62□□□□□ -0.55
SMG6-216ENST00000575176 CABP4P57796 275 aa11.62□□□□□ -0.55
SMG6-216ENST00000575176 SLC39A6Q13433 755 aa11.62□□□□□ -0.55
SMG6-216ENST00000575176 SPON1Q9HCB6 807 aa11.62□□□□□ -0.55
SMG6-216ENST00000575176 HEG1Q9ULI3 1381 aa11.62□□□□□ -0.55
SMG6-216ENST00000575176 COL11A2P13942 1736 aaPredicted RBP11.61□□□□□ -0.55
SMG6-216ENST00000575176 NUDCQ9Y266 331 aa11.61□□□□□ -0.55
SMG6-216ENST00000575176 N4BP2Q86UW6 1770 aaPredicted RBP11.61□□□□□ -0.55
SMG6-216ENST00000575176 KCNQ3O43525 872 aa11.6□□□□□ -0.55
SMG6-216ENST00000575176 SSFA2P28290 1259 aa11.6□□□□□ -0.55
SMG6-216ENST00000575176 ATP6V1AP38606 617 aa11.6□□□□□ -0.55
SMG6-216ENST00000575176 DCTN1Q14203 1278 aa11.6□□□□□ -0.55
SMG6-216ENST00000575176 MCM10Q7L590 875 aa11.6□□□□□ -0.55
SMG6-216ENST00000575176 TFCP2L1Q9NZI6 479 aa11.6□□□□□ -0.55
SMG6-216ENST00000575176 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 PTCD1O75127 700 aaKnown RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 RC3H1Q5TC82 1133 aaKnown RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 INTS5Q6P9B9 1019 aaKnown RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 DNAJC10Q8IXB1 793 aa11.59□□□□□ -0.55
SMG6-216ENST00000575176 SLC16A10Q8TF71 515 aa11.59□□□□□ -0.55
SMG6-216ENST00000575176 ZNF496Q96IT1 587 aaPredicted RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 ATF5Q9Y2D1 282 aaPredicted RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 ANKRD36CQ5JPF3 1778 aa11.59□□□□□ -0.55
SMG6-216ENST00000575176 SOS1Q07889 1333 aaPredicted RBP11.59□□□□□ -0.55
SMG6-216ENST00000575176 GNPATO15228 680 aa11.58□□□□□ -0.56
SMG6-216ENST00000575176 CYP19A1P11511 503 aaPredicted RBP11.58□□□□□ -0.56
SMG6-216ENST00000575176 CRKLP46109 303 aaKnown RBP11.58□□□□□ -0.56
SMG6-216ENST00000575176 NFE2L2Q16236 605 aa11.58□□□□□ -0.56
SMG6-216ENST00000575176 ZNF790Q6PG37 636 aa11.58□□□□□ -0.56
SMG6-216ENST00000575176 C10orf71Q711Q0 1435 aa11.58□□□□□ -0.56
SMG6-216ENST00000575176 NUP98P52948 1817 aa11.58□□□□□ -0.56
SMG6-216ENST00000575176 CHD4Q14839 1912 aa11.57□□□□□ -0.56
SMG6-216ENST00000575176 HTATSF1O43719 755 aaKnown RBP11.57□□□□□ -0.56
SMG6-216ENST00000575176 VSIG10Q8N0Z9 540 aa11.57□□□□□ -0.56
SMG6-216ENST00000575176 AK7Q96M32 723 aa11.57□□□□□ -0.56
SMG6-216ENST00000575176 RBM42Q9BTD8 480 aaKnown RBP11.57□□□□□ -0.56
SMG6-216ENST00000575176 THUMPD2Q9BTF0 503 aaKnown RBP11.57□□□□□ -0.56
SMG6-216ENST00000575176 ARFGEF1Q9Y6D6 1849 aa11.57□□□□□ -0.56
SMG6-216ENST00000575176 ARFGEF2Q9Y6D5 1785 aa11.56□□□□□ -0.56
SMG6-216ENST00000575176 COL15A1P39059 1388 aa11.56□□□□□ -0.56
SMG6-216ENST00000575176 PRAMEF22A3QJZ6 481 aa11.56□□□□□ -0.56
SMG6-216ENST00000575176 RPS6KA4O75676 772 aa11.56□□□□□ -0.56
SMG6-216ENST00000575176 ADAMTS8Q9UP79 889 aa11.56□□□□□ -0.56
SMG6-216ENST00000575176 ZBTB1Q9Y2K1 713 aa11.56□□□□□ -0.56
SMG6-216ENST00000575176 USP42Q9H9J4 1324 aaKnown RBP11.56□□□□□ -0.56
SMG6-216ENST00000575176 PHF14O94880 888 aa11.55□□□□□ -0.56
SMG6-216ENST00000575176 MSL1Q68DK7 614 aa11.55□□□□□ -0.56
SMG6-216ENST00000575176 FHDC1Q9C0D6 1143 aaPredicted RBP11.55□□□□□ -0.56
SMG6-216ENST00000575176 TRIM35Q9UPQ4 493 aa11.55□□□□□ -0.56
SMG6-216ENST00000575176 PXDNLA1KZ92 1463 aa11.55□□□□□ -0.56
SMG6-216ENST00000575176 TNRC6CQ9HCJ0 1690 aaKnown RBP11.55□□□□□ -0.56
SMG6-216ENST00000575176 GYS1P13807 737 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms