RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 DCTN1Q14203 1278 aa23.89■■□□□ 1.41
CCDC40-213ENST00000574933 PTF1AQ7RTS3 328 aa23.89■■□□□ 1.41
CCDC40-213ENST00000574933 PIGBQ92521 554 aa23.89■■□□□ 1.41
CCDC40-213ENST00000574933 TMOD3Q9NYL9 352 aa23.89■■□□□ 1.41
CCDC40-213ENST00000574933 NFATC2IPQ8NCF5 419 aa23.87■■□□□ 1.41
CCDC40-213ENST00000574933 ZNF831Q5JPB2 1677 aa23.86■■□□□ 1.41
CCDC40-213ENST00000574933 TEFQ10587 303 aa23.86■■□□□ 1.41
CCDC40-213ENST00000574933 SYTL4Q96C24 671 aaPredicted RBP23.86■■□□□ 1.41
CCDC40-213ENST00000574933 WWC1Q8IX03 1113 aa23.85■■□□□ 1.41
CCDC40-213ENST00000574933 UPF1Q92900 1129 aaKnown RBP eCLIP23.85■■□□□ 1.41
CCDC40-213ENST00000574933 THUMPD2Q9BTF0 503 aaKnown RBP23.84■■□□□ 1.41
CCDC40-213ENST00000574933 PLSCR1O15162 318 aa23.83■■□□□ 1.41
CCDC40-213ENST00000574933 TAF7Q15545 349 aaPredicted RBP23.83■■□□□ 1.41
CCDC40-213ENST00000574933 BABAM1Q9NWV8 329 aa23.83■■□□□ 1.41
CCDC40-213ENST00000574933 ZNF521Q96K83 1311 aa23.83■■□□□ 1.4
CCDC40-213ENST00000574933 CICQ96RK0 1608 aaPredicted RBP23.82■■□□□ 1.4
CCDC40-213ENST00000574933 CALD1Q05682 793 aaKnown RBP23.81■■□□□ 1.4
CCDC40-213ENST00000574933 SMARCC1Q92922 1105 aaPredicted RBP23.81■■□□□ 1.4
CCDC40-213ENST00000574933 TAF1LQ8IZX4 1826 aa23.81■■□□□ 1.4
CCDC40-213ENST00000574933 RREB1Q92766 1687 aa23.8■■□□□ 1.4
CCDC40-213ENST00000574933 WDR63Q8IWG1 891 aa23.8■■□□□ 1.4
CCDC40-213ENST00000574933 ATG3Q9NT62 314 aa23.8■■□□□ 1.4
CCDC40-213ENST00000574933 ASAP1Q9ULH1 1129 aa23.8■■□□□ 1.4
CCDC40-213ENST00000574933 IL16Q14005 1332 aa23.8■■□□□ 1.4
CCDC40-213ENST00000574933 APBA3O96018 575 aa23.79■■□□□ 1.4
CCDC40-213ENST00000574933 ZNF853P0CG23 659 aa23.79■■□□□ 1.4
CCDC40-213ENST00000574933 SF3B2Q13435 895 aaKnown RBP23.79■■□□□ 1.4
CCDC40-213ENST00000574933 KCPQ6ZWJ8 1503 aa23.79■■□□□ 1.4
CCDC40-213ENST00000574933 SENP3-EIF4A1A0A087X0R7 540 aa23.78■■□□□ 1.4
CCDC40-213ENST00000574933 PALLDQ8WX93 1383 aa23.78■■□□□ 1.4
CCDC40-213ENST00000574933 BTBD11A6QL63 1104 aa23.77■■□□□ 1.4
CCDC40-213ENST00000574933 CHL1O00533 1208 aa23.77■■□□□ 1.4
CCDC40-213ENST00000574933 BAG6P46379 1132 aa23.77■■□□□ 1.4
CCDC40-213ENST00000574933 CFAP44Q96MT7 982 aa23.77■■□□□ 1.4
CCDC40-213ENST00000574933 ZNF790Q6PG37 636 aa23.76■■□□□ 1.39
CCDC40-213ENST00000574933 IFT57Q9NWB7 429 aa23.76■■□□□ 1.39
CCDC40-213ENST00000574933 SALL2Q9Y467 1007 aaPredicted RBP23.76■■□□□ 1.39
CCDC40-213ENST00000574933 SLC39A6Q13433 755 aa23.75■■□□□ 1.39
CCDC40-213ENST00000574933 CAMKK2Q96RR4 588 aa23.75■■□□□ 1.39
CCDC40-213ENST00000574933 COL5A3P25940 1745 aaPredicted RBP23.74■■□□□ 1.39
CCDC40-213ENST00000574933 TJP1Q07157 1748 aa23.74■■□□□ 1.39
CCDC40-213ENST00000574933 GNAI1P63096 354 aa23.74■■□□□ 1.39
CCDC40-213ENST00000574933 NUP188Q5SRE5 1749 aa23.73■■□□□ 1.39
CCDC40-213ENST00000574933 HNRNPUQ00839 825 aaKnown RBP eCLIP23.73■■□□□ 1.39
CCDC40-213ENST00000574933 C5P01031 1676 aa23.73■■□□□ 1.39
CCDC40-213ENST00000574933 TTC5Q8N0Z6 440 aa23.72■■□□□ 1.39
CCDC40-213ENST00000574933 PROM2Q8N271 834 aa23.72■■□□□ 1.39
CCDC40-213ENST00000574933 HEG1Q9ULI3 1381 aa23.72■■□□□ 1.39
CCDC40-213ENST00000574933 LOC102724428A0A0B4J2F2 783 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 KCNQ3O43525 872 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 SIK1P57059 783 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 EN1Q05925 392 aaPredicted RBP23.71■■□□□ 1.39
CCDC40-213ENST00000574933 SLC27A3Q5K4L6 730 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 DEFB132Q7Z7B7 95 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 VSIG10Q8N0Z9 540 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 MIS18AQ9NYP9 233 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 TSPYL4Q9UJ04 414 aa23.71■■□□□ 1.39
CCDC40-213ENST00000574933 LAMB4A4D0S4 1761 aa23.7■■□□□ 1.39
CCDC40-213ENST00000574933 SOCS7O14512 581 aa23.7■■□□□ 1.38
CCDC40-213ENST00000574933 TXNRD1Q16881 649 aa23.7■■□□□ 1.38
CCDC40-213ENST00000574933 MYH14Q7Z406 1995 aaKnown RBP23.69■■□□□ 1.38
CCDC40-213ENST00000574933 ZBED9Q6R2W3 1325 aa23.69■■□□□ 1.38
CCDC40-213ENST00000574933 ZNF496Q96IT1 587 aaPredicted RBP23.69■■□□□ 1.38
CCDC40-213ENST00000574933 FMNL2Q96PY5 1086 aa23.69■■□□□ 1.38
CCDC40-213ENST00000574933 SLC4A9Q96Q91 983 aa23.69■■□□□ 1.38
CCDC40-213ENST00000574933 HMGB2P26583 209 aaKnown RBP23.68■■□□□ 1.38
CCDC40-213ENST00000574933 EIF4A1P60842 406 aaKnown RBP23.68■■□□□ 1.38
CCDC40-213ENST00000574933 GOLGA2Q08379 1002 aa23.68■■□□□ 1.38
CCDC40-213ENST00000574933 EZH2Q15910 746 aaKnown RBP23.68■■□□□ 1.38
CCDC40-213ENST00000574933 MBIPQ9NS73 344 aa23.68■■□□□ 1.38
CCDC40-213ENST00000574933 PTCD1O75127 700 aaKnown RBP23.67■■□□□ 1.38
CCDC40-213ENST00000574933 CCNL1Q9UK58 526 aaPredicted RBP23.67■■□□□ 1.38
CCDC40-213ENST00000574933 LAS1LQ9Y4W2 734 aaKnown RBP23.67■■□□□ 1.38
CCDC40-213ENST00000574933 RBM42Q9BTD8 480 aaKnown RBP23.66■■□□□ 1.38
CCDC40-213ENST00000574933 SPINK5Q9NQ38 1064 aaPredicted RBP23.66■■□□□ 1.38
CCDC40-213ENST00000574933 LRRC4BQ9NT99 713 aa23.66■■□□□ 1.38
CCDC40-213ENST00000574933 CACNA1FO60840 1977 aa23.65■■□□□ 1.38
CCDC40-213ENST00000574933 C4BP0C0L5 1744 aa23.64■■□□□ 1.38
CCDC40-213ENST00000574933 E9PSI1 815 aa23.64■■□□□ 1.37
CCDC40-213ENST00000574933 ATP6V1AP38606 617 aa23.64■■□□□ 1.37
CCDC40-213ENST00000574933 SLFN5Q08AF3 891 aa23.64■■□□□ 1.37
CCDC40-213ENST00000574933 TRMT2AQ8IZ69 625 aaKnown RBP23.64■■□□□ 1.37
CCDC40-213ENST00000574933 ITPK1Q13572 414 aa23.63■■□□□ 1.37
CCDC40-213ENST00000574933 QSER1Q2KHR3 1735 aa23.63■■□□□ 1.37
CCDC40-213ENST00000574933 TEX13AQ9BXU3 409 aaPredicted RBP23.63■■□□□ 1.37
CCDC40-213ENST00000574933 MYH16Q9H6N6 1097 aa23.63■■□□□ 1.37
CCDC40-213ENST00000574933 FANCIQ9NVI1 1328 aa23.62■■□□□ 1.37
CCDC40-213ENST00000574933 UBR3Q6ZT12 1888 aa23.62■■□□□ 1.37
CCDC40-213ENST00000574933 GIGYF1O75420 1035 aaPredicted RBP23.62■■□□□ 1.37
CCDC40-213ENST00000574933 SNRPA1P09661 255 aaKnown RBP23.62■■□□□ 1.37
CCDC40-213ENST00000574933 TUBGCP6Q96RT7 1819 aa23.61■■□□□ 1.37
CCDC40-213ENST00000574933 TSR2Q969E8 191 aaKnown RBP23.61■■□□□ 1.37
CCDC40-213ENST00000574933 HOXB7P09629 217 aa23.6■■□□□ 1.37
CCDC40-213ENST00000574933 DNAJC10Q8IXB1 793 aa23.6■■□□□ 1.37
CCDC40-213ENST00000574933 SOS1Q07889 1333 aaPredicted RBP23.59■■□□□ 1.37
CCDC40-213ENST00000574933 KCNQ4P56696 695 aa23.59■■□□□ 1.37
CCDC40-213ENST00000574933 CDCA7LQ96GN5 454 aa23.59■■□□□ 1.37
CCDC40-213ENST00000574933 RC3H1Q5TC82 1133 aaKnown RBP23.58■■□□□ 1.37
CCDC40-213ENST00000574933 LINC00116Q8NCU8 138 aa23.58■■□□□ 1.37
CCDC40-213ENST00000574933 CNTNAP4Q9C0A0 1308 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms