RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 RCAN3Q9UKA8 241 aa31.14■■■□□ 2.58
ATPAF1-213ENST00000574428 MARCH10Q8NA82 808 aaPredicted RBP31.13■■■□□ 2.57
ATPAF1-213ENST00000574428 BTBD11A6QL63 1104 aa31.12■■■□□ 2.57
ATPAF1-213ENST00000574428 BABAM1Q9NWV8 329 aa31.12■■■□□ 2.57
ATPAF1-213ENST00000574428 KDM3BQ7LBC6 1761 aa31.12■■■□□ 2.57
ATPAF1-213ENST00000574428 CABP4P57796 275 aa31.12■■■□□ 2.57
ATPAF1-213ENST00000574428 ERVV-2B6SEH9 535 aa31.1■■■□□ 2.57
ATPAF1-213ENST00000574428 ONECUT3O60422 494 aaPredicted RBP31.1■■■□□ 2.57
ATPAF1-213ENST00000574428 KRT24Q2M2I5 525 aa31.1■■■□□ 2.57
ATPAF1-213ENST00000574428 C8orf58Q8NAV2 365 aa31.1■■■□□ 2.57
ATPAF1-213ENST00000574428 SUPT16HQ9Y5B9 1047 aaKnown RBP31.09■■■□□ 2.57
ATPAF1-213ENST00000574428 TSPYL6Q8N831 410 aa31.08■■■□□ 2.57
ATPAF1-213ENST00000574428 ELL2O00472 640 aaPredicted RBP31.07■■■□□ 2.56
ATPAF1-213ENST00000574428 KCNQ3O43525 872 aa31.07■■■□□ 2.56
ATPAF1-213ENST00000574428 SEPT12Q8IYM1 358 aa31.07■■■□□ 2.56
ATPAF1-213ENST00000574428 DOT1LQ8TEK3 1739 aa31.07■■■□□ 2.56
ATPAF1-213ENST00000574428 RGS17Q9UGC6 210 aaPredicted RBP31.05■■■□□ 2.56
ATPAF1-213ENST00000574428 SLC39A6Q13433 755 aa31.05■■■□□ 2.56
ATPAF1-213ENST00000574428 TWISTNBQ3B726 338 aaPredicted RBP31.05■■■□□ 2.56
ATPAF1-213ENST00000574428 RBM6P78332 1123 aaKnown RBP31.04■■■□□ 2.56
ATPAF1-213ENST00000574428 CT47B1P0C2W7 299 aaPredicted RBP31.03■■■□□ 2.56
ATPAF1-213ENST00000574428 ILDR1Q86SU0 546 aaPredicted RBP31.03■■■□□ 2.56
ATPAF1-213ENST00000574428 TMOD3Q9NYL9 352 aa31.03■■■□□ 2.56
ATPAF1-213ENST00000574428 ITGB4P16144 1822 aa31.02■■■□□ 2.56
ATPAF1-213ENST00000574428 VAMP4O75379 141 aa31.01■■■□□ 2.55
ATPAF1-213ENST00000574428 EIF4A1P60842 406 aaKnown RBP31.01■■■□□ 2.55
ATPAF1-213ENST00000574428 ZNF790Q6PG37 636 aa31.01■■■□□ 2.55
ATPAF1-213ENST00000574428 RARSP54136 660 aaKnown RBP31■■■□□ 2.55
ATPAF1-213ENST00000574428 SYTL4Q96C24 671 aaPredicted RBP31■■■□□ 2.55
ATPAF1-213ENST00000574428 ACSBG1Q96GR2 724 aa30.99■■■□□ 2.55
ATPAF1-213ENST00000574428 PAPPAQ13219 1627 aa30.98■■■□□ 2.55
ATPAF1-213ENST00000574428 BCAR3O75815 825 aa30.98■■■□□ 2.55
ATPAF1-213ENST00000574428 PRIM1P49642 420 aaKnown RBP30.98■■■□□ 2.55
ATPAF1-213ENST00000574428 FAM182BQ5T319 152 aa30.98■■■□□ 2.55
ATPAF1-213ENST00000574428 PIGBQ92521 554 aa30.98■■■□□ 2.55
ATPAF1-213ENST00000574428 BCL2L13Q9BXK5 485 aa30.98■■■□□ 2.55
ATPAF1-213ENST00000574428 TTC5Q8N0Z6 440 aa30.97■■■□□ 2.55
ATPAF1-213ENST00000574428 BCL9O00512 1426 aa30.97■■■□□ 2.55
ATPAF1-213ENST00000574428 RXRBP28702 533 aa30.96■■■□□ 2.55
ATPAF1-213ENST00000574428 POTEAQ6S8J7 498 aa30.96■■■□□ 2.55
ATPAF1-213ENST00000574428 BRWD3Q6RI45 1802 aa30.95■■■□□ 2.55
ATPAF1-213ENST00000574428 SSH1Q8WYL5 1049 aa30.94■■■□□ 2.54
ATPAF1-213ENST00000574428 KAT6BQ8WYB5 2073 aa30.94■■■□□ 2.54
ATPAF1-213ENST00000574428 RNF123Q5XPI4 1314 aa30.93■■■□□ 2.54
ATPAF1-213ENST00000574428 TCERG1O14776 1098 aaKnown RBP30.93■■■□□ 2.54
ATPAF1-213ENST00000574428 ZNF496Q96IT1 587 aaPredicted RBP30.93■■■□□ 2.54
ATPAF1-213ENST00000574428 ZNF428Q96B54 188 aa30.92■■■□□ 2.54
ATPAF1-213ENST00000574428 SMC4Q9NTJ3 1288 aa30.92■■■□□ 2.54
ATPAF1-213ENST00000574428 HEG1Q9ULI3 1381 aa30.92■■■□□ 2.54
ATPAF1-213ENST00000574428 UBR2Q8IWV8 1755 aa30.92■■■□□ 2.54
ATPAF1-213ENST00000574428 RRP1P56182 461 aaKnown RBP30.92■■■□□ 2.54
ATPAF1-213ENST00000574428 ASAP1Q9ULH1 1129 aa30.92■■■□□ 2.54
ATPAF1-213ENST00000574428 KCPQ6ZWJ8 1503 aa30.9■■■□□ 2.54
ATPAF1-213ENST00000574428 KCNQ2O43526 872 aa30.9■■■□□ 2.54
ATPAF1-213ENST00000574428 PLIN1O60240 522 aa30.89■■■□□ 2.54
ATPAF1-213ENST00000574428 ALDH1L2Q3SY69 923 aa30.89■■■□□ 2.54
ATPAF1-213ENST00000574428 ATG3Q9NT62 314 aa30.89■■■□□ 2.54
ATPAF1-213ENST00000574428 GIGYF1O75420 1035 aaPredicted RBP30.89■■■□□ 2.54
ATPAF1-213ENST00000574428 KRT27Q7Z3Y8 459 aa30.89■■■□□ 2.54
ATPAF1-213ENST00000574428 FMNL2Q96PY5 1086 aa30.89■■■□□ 2.54
ATPAF1-213ENST00000574428 SOS1Q07889 1333 aaPredicted RBP30.88■■■□□ 2.53
ATPAF1-213ENST00000574428 C5P01031 1676 aa30.88■■■□□ 2.53
ATPAF1-213ENST00000574428 RGS12O14924 1447 aa30.88■■■□□ 2.53
ATPAF1-213ENST00000574428 PRAMEF22A3QJZ6 481 aa30.88■■■□□ 2.53
ATPAF1-213ENST00000574428 NECTIN2Q92692 538 aa30.88■■■□□ 2.53
ATPAF1-213ENST00000574428 PTCD1O75127 700 aaKnown RBP30.87■■■□□ 2.53
ATPAF1-213ENST00000574428 HOXB7P09629 217 aa30.87■■■□□ 2.53
ATPAF1-213ENST00000574428 HDGFL1Q5TGJ6 251 aa30.85■■■□□ 2.53
ATPAF1-213ENST00000574428 NHSQ6T4R5 1651 aa30.85■■■□□ 2.53
ATPAF1-213ENST00000574428 EIF2S2P20042 333 aaKnown RBP30.84■■■□□ 2.53
ATPAF1-213ENST00000574428 IRX6P78412 446 aaPredicted RBP30.84■■■□□ 2.53
ATPAF1-213ENST00000574428 FRAT1Q92837 279 aaPredicted RBP30.84■■■□□ 2.53
ATPAF1-213ENST00000574428 PTF1AQ7RTS3 328 aa30.84■■■□□ 2.53
ATPAF1-213ENST00000574428 MRPL50Q8N5N7 158 aaKnown RBP30.84■■■□□ 2.53
ATPAF1-213ENST00000574428 SNRPA1P09661 255 aaKnown RBP30.82■■■□□ 2.52
ATPAF1-213ENST00000574428 CCDC30Q5VVM6 783 aa30.82■■■□□ 2.52
ATPAF1-213ENST00000574428 SBF2Q86WG5 1849 aa30.81■■■□□ 2.52
ATPAF1-213ENST00000574428 CANXP27824 592 aaKnown RBP30.81■■■□□ 2.52
ATPAF1-213ENST00000574428 GOLGA6L2Q8N9W4 650 aaPredicted RBP30.81■■■□□ 2.52
ATPAF1-213ENST00000574428 NEFLP07196 543 aa30.8■■■□□ 2.52
ATPAF1-213ENST00000574428 RBM42Q9BTD8 480 aaKnown RBP30.79■■■□□ 2.52
ATPAF1-213ENST00000574428 STK31Q9BXU1 1019 aa30.79■■■□□ 2.52
ATPAF1-213ENST00000574428 NOB1Q9ULX3 412 aaKnown RBP30.79■■■□□ 2.52
ATPAF1-213ENST00000574428 BRPF1P55201 1214 aaPredicted RBP30.78■■■□□ 2.52
ATPAF1-213ENST00000574428 FAM196AQ6ZSG2 479 aa30.78■■■□□ 2.52
ATPAF1-213ENST00000574428 KIF16BQ96L93 1317 aa30.78■■■□□ 2.52
ATPAF1-213ENST00000574428 LAMB4A4D0S4 1761 aa30.78■■■□□ 2.52
ATPAF1-213ENST00000574428 BTAF1O14981 1849 aa30.78■■■□□ 2.52
ATPAF1-213ENST00000574428 SLC4A2P04920 1241 aa30.77■■■□□ 2.52
ATPAF1-213ENST00000574428 USP16Q9Y5T5 823 aa30.77■■■□□ 2.52
ATPAF1-213ENST00000574428 C20orf194Q5TEA3 1177 aa30.76■■■□□ 2.51
ATPAF1-213ENST00000574428 CHPF2Q9P2E5 772 aa30.76■■■□□ 2.51
ATPAF1-213ENST00000574428 PALLDQ8WX93 1383 aa30.75■■■□□ 2.51
ATPAF1-213ENST00000574428 SLC4A9Q96Q91 983 aa30.74■■■□□ 2.51
ATPAF1-213ENST00000574428 CHMP4AQ9BY43 222 aa30.74■■■□□ 2.51
ATPAF1-213ENST00000574428 TNNQ9UQP3 1299 aa30.74■■■□□ 2.51
ATPAF1-213ENST00000574428 FKBP8Q14318 412 aa30.74■■■□□ 2.51
ATPAF1-213ENST00000574428 ZKSCAN2Q63HK3 967 aa30.74■■■□□ 2.51
ATPAF1-213ENST00000574428 G2E3Q7L622 706 aa30.72■■■□□ 2.51
ATPAF1-213ENST00000574428 VSIG10Q8N0Z9 540 aa30.72■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms