RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 ZNF831Q5JPB2 1677 aa23.63■■□□□ 1.37
SMG6-214ENST00000573827 SMIM5Q71RC9 77 aa23.62■■□□□ 1.37
SMG6-214ENST00000573827 HMOX1P09601 288 aa23.61■■□□□ 1.37
SMG6-214ENST00000573827 HMGB2P26583 209 aaKnown RBP23.61■■□□□ 1.37
SMG6-214ENST00000573827 FLAD1Q8NFF5 587 aa23.6■■□□□ 1.37
SMG6-214ENST00000573827 SCN11AQ9UI33 1791 aa23.6■■□□□ 1.37
SMG6-214ENST00000573827 ATP6V1AP38606 617 aa23.59■■□□□ 1.37
SMG6-214ENST00000573827 C1orf141Q5JVX7 400 aa23.59■■□□□ 1.37
SMG6-214ENST00000573827 ADAMTS7Q9UKP4 1686 aa23.59■■□□□ 1.37
SMG6-214ENST00000573827 MRC1P22897 1456 aa23.58■■□□□ 1.37
SMG6-214ENST00000573827 POLD1P28340 1107 aa23.58■■□□□ 1.37
SMG6-214ENST00000573827 CABP4P57796 275 aa23.58■■□□□ 1.37
SMG6-214ENST00000573827 AKAP4Q5JQC9 854 aa23.58■■□□□ 1.37
SMG6-214ENST00000573827 AK7Q96M32 723 aa23.58■■□□□ 1.37
SMG6-214ENST00000573827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.57■■□□□ 1.36
SMG6-214ENST00000573827 CNGB1Q14028 1251 aaPredicted RBP23.57■■□□□ 1.36
SMG6-214ENST00000573827 MTHFSDQ2M296 383 aaKnown RBP23.57■■□□□ 1.36
SMG6-214ENST00000573827 NFATC2IPQ8NCF5 419 aa23.57■■□□□ 1.36
SMG6-214ENST00000573827 COL5A3P25940 1745 aaPredicted RBP23.56■■□□□ 1.36
SMG6-214ENST00000573827 SSFA2P28290 1259 aa23.56■■□□□ 1.36
SMG6-214ENST00000573827 MSL1Q68DK7 614 aa23.56■■□□□ 1.36
SMG6-214ENST00000573827 LGR6Q9HBX8 967 aa23.56■■□□□ 1.36
SMG6-214ENST00000573827 MSH5O43196 834 aa23.55■■□□□ 1.36
SMG6-214ENST00000573827 CICQ96RK0 1608 aaPredicted RBP23.54■■□□□ 1.36
SMG6-214ENST00000573827 MYH14Q7Z406 1995 aaKnown RBP23.54■■□□□ 1.36
SMG6-214ENST00000573827 PPP2R1AP30153 589 aa23.53■■□□□ 1.36
SMG6-214ENST00000573827 GNPATO15228 680 aa23.52■■□□□ 1.36
SMG6-214ENST00000573827 RNMTO43148 476 aaKnown RBP23.52■■□□□ 1.36
SMG6-214ENST00000573827 PHF14O94880 888 aa23.52■■□□□ 1.36
SMG6-214ENST00000573827 NLGN2Q8NFZ4 835 aa23.52■■□□□ 1.36
SMG6-214ENST00000573827 RBM42Q9BTD8 480 aaKnown RBP23.52■■□□□ 1.36
SMG6-214ENST00000573827 SLC52A2Q9HAB3 445 aa23.52■■□□□ 1.36
SMG6-214ENST00000573827 CNTNAP4Q9C0A0 1308 aa23.52■■□□□ 1.36
SMG6-214ENST00000573827 RC3H1Q5TC82 1133 aaKnown RBP23.51■■□□□ 1.35
SMG6-214ENST00000573827 TJP1Q07157 1748 aa23.5■■□□□ 1.35
SMG6-214ENST00000573827 VIRMAQ69YN4 1812 aaKnown RBP23.49■■□□□ 1.35
SMG6-214ENST00000573827 U2SURPO15042 1029 aaKnown RBP23.48■■□□□ 1.35
SMG6-214ENST00000573827 PTCD1O75127 700 aaKnown RBP23.48■■□□□ 1.35
SMG6-214ENST00000573827 DCAF8L1A6NGE4 600 aa23.47■■□□□ 1.35
SMG6-214ENST00000573827 RSPH6AQ9H0K4 717 aa23.47■■□□□ 1.35
SMG6-214ENST00000573827 KCPQ6ZWJ8 1503 aa23.47■■□□□ 1.35
SMG6-214ENST00000573827 YY1P25490 414 aa23.46■■□□□ 1.35
SMG6-214ENST00000573827 PHACTR3Q96KR7 559 aa23.46■■□□□ 1.35
SMG6-214ENST00000573827 RPS6KA4O75676 772 aa23.45■■□□□ 1.34
SMG6-214ENST00000573827 KLHL34Q8N239 644 aa23.45■■□□□ 1.34
SMG6-214ENST00000573827 ADRA2BP18089 450 aa23.44■■□□□ 1.34
SMG6-214ENST00000573827 SLC39A6Q13433 755 aa23.44■■□□□ 1.34
SMG6-214ENST00000573827 IL17REQ8NFR9 667 aa23.44■■□□□ 1.34
SMG6-214ENST00000573827 ARHGEF1Q92888 912 aaKnown RBP23.44■■□□□ 1.34
SMG6-214ENST00000573827 RTCBQ9Y3I0 505 aaKnown RBP23.44■■□□□ 1.34
SMG6-214ENST00000573827 CD2APQ9Y5K6 639 aa23.44■■□□□ 1.34
SMG6-214ENST00000573827 CRKLP46109 303 aaKnown RBP23.43■■□□□ 1.34
SMG6-214ENST00000573827 TRAPPC3LQ5T215 181 aa23.42■■□□□ 1.34
SMG6-214ENST00000573827 INTS5Q6P9B9 1019 aaKnown RBP23.42■■□□□ 1.34
SMG6-214ENST00000573827 GAS2L2Q8NHY3 880 aa23.42■■□□□ 1.34
SMG6-214ENST00000573827 CFAP53Q96M91 514 aa23.42■■□□□ 1.34
SMG6-214ENST00000573827 UBR2Q8IWV8 1755 aa23.42■■□□□ 1.34
SMG6-214ENST00000573827 C4AP0C0L4 1744 aa23.42■■□□□ 1.34
SMG6-214ENST00000573827 CEMIPQ8WUJ3 1361 aa23.41■■□□□ 1.34
SMG6-214ENST00000573827 PRKAR2BP31323 418 aa23.41■■□□□ 1.34
SMG6-214ENST00000573827 DNAJC10Q8IXB1 793 aa23.41■■□□□ 1.34
SMG6-214ENST00000573827 SIPA1L3O60292 1781 aaPredicted RBP23.4■■□□□ 1.34
SMG6-214ENST00000573827 YBX3P16989 372 aaKnown RBP eCLIP23.4■■□□□ 1.34
SMG6-214ENST00000573827 GNAT3A8MTJ3 354 aa23.39■■□□□ 1.33
SMG6-214ENST00000573827 GYS1P13807 737 aa23.39■■□□□ 1.33
SMG6-214ENST00000573827 CHD4Q14839 1912 aa23.38■■□□□ 1.33
SMG6-214ENST00000573827 MMP10P09238 476 aa23.37■■□□□ 1.33
SMG6-214ENST00000573827 CYP19A1P11511 503 aaPredicted RBP23.37■■□□□ 1.33
SMG6-214ENST00000573827 GPR162Q16538 588 aa23.37■■□□□ 1.33
SMG6-214ENST00000573827 FCHSD2O94868 740 aa23.36■■□□□ 1.33
SMG6-214ENST00000573827 U2AF1L5P0DN76 240 aaPredicted RBP23.36■■□□□ 1.33
SMG6-214ENST00000573827 U2AF1Q01081 240 aaKnown RBP eCLIP23.36■■□□□ 1.33
SMG6-214ENST00000573827 VSIG10Q8N0Z9 540 aa23.36■■□□□ 1.33
SMG6-214ENST00000573827 NUDCQ9Y266 331 aa23.36■■□□□ 1.33
SMG6-214ENST00000573827 NLGN1Q8N2Q7 840 aa23.35■■□□□ 1.33
SMG6-214ENST00000573827 SOS1Q07889 1333 aaPredicted RBP23.34■■□□□ 1.33
SMG6-214ENST00000573827 USP42Q9H9J4 1324 aaKnown RBP23.34■■□□□ 1.33
SMG6-214ENST00000573827 KIAA1551Q9HCM1 1747 aa23.34■■□□□ 1.33
SMG6-214ENST00000573827 KIF13BQ9NQT8 1826 aa23.34■■□□□ 1.33
SMG6-214ENST00000573827 CCDC87Q9NVE4 849 aa23.34■■□□□ 1.33
SMG6-214ENST00000573827 SRP68Q9UHB9 627 aaKnown RBP23.34■■□□□ 1.33
SMG6-214ENST00000573827 RFC4P35249 363 aa23.33■■□□□ 1.33
SMG6-214ENST00000573827 C10orf71Q711Q0 1435 aa23.33■■□□□ 1.32
SMG6-214ENST00000573827 ZNF790Q6PG37 636 aa23.32■■□□□ 1.32
SMG6-214ENST00000573827 ZNF496Q96IT1 587 aaPredicted RBP23.32■■□□□ 1.32
SMG6-214ENST00000573827 ZBTB1Q9Y2K1 713 aa23.31■■□□□ 1.32
SMG6-214ENST00000573827 TEFQ10587 303 aa23.3■■□□□ 1.32
SMG6-214ENST00000573827 FKBP8Q14318 412 aa23.3■■□□□ 1.32
SMG6-214ENST00000573827 ZNF784Q8NCA9 323 aaPredicted RBP23.3■■□□□ 1.32
SMG6-214ENST00000573827 PXDNLA1KZ92 1463 aa23.3■■□□□ 1.32
SMG6-214ENST00000573827 HEG1Q9ULI3 1381 aa23.29■■□□□ 1.32
SMG6-214ENST00000573827 KCNQ3O43525 872 aa23.29■■□□□ 1.32
SMG6-214ENST00000573827 DDR1Q08345 913 aa23.29■■□□□ 1.32
SMG6-214ENST00000573827 PELP1Q8IZL8 1130 aaKnown RBP23.29■■□□□ 1.32
SMG6-214ENST00000573827 PLEKHF1Q96S99 279 aa23.28■■□□□ 1.32
SMG6-214ENST00000573827 GRIN3BO60391 1043 aa23.27■■□□□ 1.32
SMG6-214ENST00000573827 TM4SF1P30408 202 aa23.26■■□□□ 1.31
SMG6-214ENST00000573827 MCM10Q7L590 875 aa23.26■■□□□ 1.31
SMG6-214ENST00000573827 TTC5Q8N0Z6 440 aa23.26■■□□□ 1.31
SMG6-214ENST00000573827 BCL2L12Q9HB09 334 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms