RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	GUCA2A	Q02747	115 aa		13.74	□□□□□ -0.21
CIITA-208	ENST00000572665	MCM6	Q14566	821 aa		13.74	□□□□□ -0.21
CIITA-208	ENST00000572665	PCDHGC3	Q9UN70	934 aa		13.74	□□□□□ -0.21
CIITA-208	ENST00000572665	PTCH1	Q13635	1447 aa		13.73	□□□□□ -0.21
CIITA-208	ENST00000572665	NALCN	Q8IZF0	1738 aa		13.73	□□□□□ -0.21
CIITA-208	ENST00000572665	GRIPAP1	Q4V328	841 aa		13.73	□□□□□ -0.21
CIITA-208	ENST00000572665	PRPF38B	Q5VTL8	546 aa	Known RBP	13.73	□□□□□ -0.21
CIITA-208	ENST00000572665	SETD5	Q9C0A6	1442 aa		13.73	□□□□□ -0.21
CIITA-208	ENST00000572665	BCAM	P50895	628 aa		13.72	□□□□□ -0.21
CIITA-208	ENST00000572665	CABLES1	Q8TDN4	633 aa		13.72	□□□□□ -0.21
CIITA-208	ENST00000572665	WNT2B	Q93097	391 aa		13.72	□□□□□ -0.21
CIITA-208	ENST00000572665	ZMYND15	Q9H091	742 aa		13.72	□□□□□ -0.21
CIITA-208	ENST00000572665	CCDC144A	A2RUR9	1427 aa		13.72	□□□□□ -0.21
CIITA-208	ENST00000572665	ATP6V1A	P38606	617 aa		13.71	□□□□□ -0.21
CIITA-208	ENST00000572665	PRAG1	Q86YV5	1406 aa		13.71	□□□□□ -0.22
CIITA-208	ENST00000572665	ACTN4	O43707	911 aa	Known RBP	13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	HRC	P23327	699 aa		13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	TMEM259	Q4ZIN3	620 aa		13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	RTL5	Q5HYW3	569 aa	Predicted RBP	13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	BANK1	Q8NDB2	785 aa		13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	ZBTB3	Q9H5J0	574 aa		13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	HPS5	Q9UPZ3	1129 aa		13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	LRP6	O75581	1613 aa		13.7	□□□□□ -0.22
CIITA-208	ENST00000572665	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.69	□□□□□ -0.22
CIITA-208	ENST00000572665	NUTM2E	B1AL46	878 aa	Predicted RBP	13.69	□□□□□ -0.22
CIITA-208	ENST00000572665	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.69	□□□□□ -0.22
CIITA-208	ENST00000572665	ANKRD30B	Q9BXX2	1392 aa		13.69	□□□□□ -0.22
CIITA-208	ENST00000572665	PPP4C	P60510	307 aa		13.68	□□□□□ -0.22
CIITA-208	ENST00000572665	PRR14	Q9BWN1	585 aa		13.68	□□□□□ -0.22
CIITA-208	ENST00000572665	TSR3	Q9UJK0	312 aa	Known RBP	13.68	□□□□□ -0.22
CIITA-208	ENST00000572665	C1orf167	Q5SNV9	1468 aa		13.67	□□□□□ -0.22
CIITA-208	ENST00000572665	RXRB	P28702	533 aa		13.67	□□□□□ -0.22
CIITA-208	ENST00000572665	POTEG	Q6S5H5	508 aa		13.67	□□□□□ -0.22
CIITA-208	ENST00000572665	LAMC1	P11047	1609 aa		13.66	□□□□□ -0.22
CIITA-208	ENST00000572665	SPDYE5	A6NIY4	337 aa		13.66	□□□□□ -0.22
CIITA-208	ENST00000572665	MTMR2	Q13614	643 aa		13.65	□□□□□ -0.22
CIITA-208	ENST00000572665	MORN1	Q5T089	497 aa		13.65	□□□□□ -0.22
CIITA-208	ENST00000572665	MPHOSPH9	Q99550	1183 aa		13.65	□□□□□ -0.22
CIITA-208	ENST00000572665	ROBO2	Q9HCK4	1378 aa		13.65	□□□□□ -0.22
CIITA-208	ENST00000572665	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.65	□□□□□ -0.22
CIITA-208	ENST00000572665	PNPLA6	Q8IY17	1366 aa		13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	POTEM	A6NI47	508 aa		13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	APLP1	P51693	650 aa		13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	PUS10	Q3MIT2	529 aa	Known RBP	13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	CDAN1	Q8IWY9	1227 aa		13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	IFT172	Q9UG01	1749 aa		13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	AFF2	P51816	1311 aa		13.64	□□□□□ -0.23
CIITA-208	ENST00000572665	CDC42BPG	Q6DT37	1551 aa		13.63	□□□□□ -0.23
CIITA-208	ENST00000572665	LRPPRC	P42704	1394 aa	Known RBP	13.63	□□□□□ -0.23
CIITA-208	ENST00000572665	RGL3	Q3MIN7	710 aa		13.63	□□□□□ -0.23
CIITA-208	ENST00000572665	SNRK	Q9NRH2	765 aa		13.63	□□□□□ -0.23
CIITA-208	ENST00000572665	C8orf37	Q96NL8	207 aa		13.62	□□□□□ -0.23
CIITA-208	ENST00000572665	SOS2	Q07890	1332 aa	Predicted RBP	13.62	□□□□□ -0.23
CIITA-208	ENST00000572665	NPHP3	Q7Z494	1330 aa		13.62	□□□□□ -0.23
CIITA-208	ENST00000572665	KNDC1	Q76NI1	1749 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	C6orf229	H3BNL8	230 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	AP1G2	O75843	785 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	THSD4	Q6ZMP0	1018 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	SLC27A5	Q9Y2P5	690 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	TECPR2	O15040	1411 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	SPATA31E1	Q6ZUB1	1445 aa		13.61	□□□□□ -0.23
CIITA-208	ENST00000572665	DDX17	Q92841	729 aa	Known RBP	13.6	□□□□□ -0.23
CIITA-208	ENST00000572665	CLUAP1	Q96AJ1	413 aa		13.6	□□□□□ -0.23
CIITA-208	ENST00000572665	NGLY1	Q96IV0	654 aa		13.6	□□□□□ -0.23
CIITA-208	ENST00000572665	ORAI2	Q96SN7	254 aa		13.6	□□□□□ -0.23
CIITA-208	ENST00000572665	WBP1L	Q9NX94	342 aa		13.6	□□□□□ -0.23
CIITA-208	ENST00000572665	ADGRF5	Q8IZF2	1346 aa		13.6	□□□□□ -0.23
CIITA-208	ENST00000572665	ABCC11	Q96J66	1382 aa		13.59	□□□□□ -0.23
CIITA-208	ENST00000572665	RBM6	P78332	1123 aa	Known RBP	13.59	□□□□□ -0.23
CIITA-208	ENST00000572665	ESCO1	Q5FWF5	840 aa		13.59	□□□□□ -0.23
CIITA-208	ENST00000572665	SYMPK	Q92797	1274 aa	Known RBP	13.59	□□□□□ -0.23
CIITA-208	ENST00000572665	QTRT2	Q9H974	415 aa	Known RBP	13.59	□□□□□ -0.23
CIITA-208	ENST00000572665	PIK3C2G	O75747	1445 aa		13.58	□□□□□ -0.24
CIITA-208	ENST00000572665	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.58	□□□□□ -0.24
CIITA-208	ENST00000572665		A6NJR5	290 aa		13.58	□□□□□ -0.24
CIITA-208	ENST00000572665	USP17L8	P0C7I0	530 aa		13.58	□□□□□ -0.24
CIITA-208	ENST00000572665		Q3C1V9	767 aa		13.58	□□□□□ -0.24
CIITA-208	ENST00000572665	MTMR14	Q8NCE2	650 aa		13.58	□□□□□ -0.24
CIITA-208	ENST00000572665	KCTD12	Q96CX2	325 aa	Known RBP	13.58	□□□□□ -0.24
CIITA-208	ENST00000572665	STK26	Q9P289	416 aa		13.58	□□□□□ -0.24
CIITA-208	ENST00000572665	CFAP99	D6REC4	459 aa		13.57	□□□□□ -0.24
CIITA-208	ENST00000572665	ADAMTS2	O95450	1211 aa		13.57	□□□□□ -0.24
CIITA-208	ENST00000572665	PCDHB3	Q9Y5E6	796 aa		13.57	□□□□□ -0.24
CIITA-208	ENST00000572665	KIF1A	Q12756	1690 aa		13.56	□□□□□ -0.24
CIITA-208	ENST00000572665	SIRT1	Q96EB6	747 aa		13.56	□□□□□ -0.24
CIITA-208	ENST00000572665	TRPC5	Q9UL62	973 aa	Predicted RBP	13.56	□□□□□ -0.24
CIITA-208	ENST00000572665	DHX57	Q6P158	1386 aa	Known RBP	13.56	□□□□□ -0.24
CIITA-208	ENST00000572665	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.56	□□□□□ -0.24
CIITA-208	ENST00000572665	POM121	Q96HA1	1249 aa		13.55	□□□□□ -0.24
CIITA-208	ENST00000572665	USP21	Q9UK80	565 aa		13.55	□□□□□ -0.24
CIITA-208	ENST00000572665	MYOM2	P54296	1465 aa		13.55	□□□□□ -0.24
CIITA-208	ENST00000572665	FMN2	Q9NZ56	1722 aa		13.54	□□□□□ -0.24
CIITA-208	ENST00000572665	MARF1	Q9Y4F3	1742 aa	Known RBP	13.54	□□□□□ -0.24
CIITA-208	ENST00000572665	TMEM132E	Q6IEE7	984 aa		13.54	□□□□□ -0.24
CIITA-208	ENST00000572665	WAPL	Q7Z5K2	1190 aa		13.54	□□□□□ -0.24
CIITA-208	ENST00000572665	RETREG3	Q86VR2	466 aa		13.54	□□□□□ -0.24
CIITA-208	ENST00000572665	HELB	Q8NG08	1087 aa	Predicted RBP	13.54	□□□□□ -0.24
CIITA-208	ENST00000572665	FOXO3	O43524	673 aa		13.53	□□□□□ -0.24
CIITA-208	ENST00000572665	CTDSPL2	Q05D32	466 aa		13.53	□□□□□ -0.24
CIITA-208	ENST00000572665	BLOC1S3	Q6QNY0	202 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms