RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 KIF24Q5T7B8 1368 aa11.11□□□□□ -0.63
VPS53-214ENST00000572607 TNS2Q63HR2 1409 aa11.1□□□□□ -0.63
VPS53-214ENST00000572607 PAPPAQ13219 1627 aa11.1□□□□□ -0.63
VPS53-214ENST00000572607 PTGER2P43116 358 aa11.1□□□□□ -0.63
VPS53-214ENST00000572607 NBPF14Q5TI25 921 aa11.1□□□□□ -0.63
VPS53-214ENST00000572607 FLT4P35916 1363 aa11.1□□□□□ -0.63
VPS53-214ENST00000572607 BCL9O00512 1426 aa11.09□□□□□ -0.63
VPS53-214ENST00000572607 PLSCR1O15162 318 aa11.09□□□□□ -0.63
VPS53-214ENST00000572607 PPM1GO15355 546 aaPredicted RBP11.09□□□□□ -0.63
VPS53-214ENST00000572607 CHRM1P11229 460 aaPredicted RBP11.09□□□□□ -0.63
VPS53-214ENST00000572607 MARCH10Q8NA82 808 aaPredicted RBP11.09□□□□□ -0.63
VPS53-214ENST00000572607 OCEL1Q9H607 264 aa11.09□□□□□ -0.63
VPS53-214ENST00000572607 KNSTRNQ9Y448 316 aa11.09□□□□□ -0.63
VPS53-214ENST00000572607 FAM208AQ9UK61 1670 aaKnown RBP11.08□□□□□ -0.64
VPS53-214ENST00000572607 NSD2O96028 1365 aa11.08□□□□□ -0.64
VPS53-214ENST00000572607 INSRP06213 1382 aa11.08□□□□□ -0.64
VPS53-214ENST00000572607 COL24A1Q17RW2 1714 aa11.08□□□□□ -0.64
VPS53-214ENST00000572607 KIF7Q2M1P5 1343 aa11.08□□□□□ -0.64
VPS53-214ENST00000572607 NHSQ6T4R5 1651 aa11.08□□□□□ -0.64
VPS53-214ENST00000572607 HSP90AB2PQ58FF8 381 aa11.07□□□□□ -0.64
VPS53-214ENST00000572607 ZNF467Q7Z7K2 595 aaPredicted RBP11.07□□□□□ -0.64
VPS53-214ENST00000572607 SLAIN1Q8ND83 568 aa11.07□□□□□ -0.64
VPS53-214ENST00000572607 BCL11BQ9C0K0 894 aaPredicted RBP11.07□□□□□ -0.64
VPS53-214ENST00000572607 EMILIN1Q9Y6C2 1016 aa11.07□□□□□ -0.64
VPS53-214ENST00000572607 TATP17735 454 aaPredicted RBP11.06□□□□□ -0.64
VPS53-214ENST00000572607 TNNT2P45379 298 aaPredicted RBP11.06□□□□□ -0.64
VPS53-214ENST00000572607 MORC1Q86VD1 984 aa11.06□□□□□ -0.64
VPS53-214ENST00000572607 ZNF784Q8NCA9 323 aaPredicted RBP11.06□□□□□ -0.64
VPS53-214ENST00000572607 RAPGEF4Q8WZA2 1011 aa11.06□□□□□ -0.64
VPS53-214ENST00000572607 ZBTB7AO95365 584 aa11.05□□□□□ -0.64
VPS53-214ENST00000572607 NBPF6Q5VWK0 638 aa11.05□□□□□ -0.64
VPS53-214ENST00000572607 DDX54Q8TDD1 881 aaKnown RBP11.05□□□□□ -0.64
VPS53-214ENST00000572607 NBPF4Q96M43 638 aa11.05□□□□□ -0.64
VPS53-214ENST00000572607 PPP1R1BQ9UD71 204 aaPredicted RBP11.05□□□□□ -0.64
VPS53-214ENST00000572607 WASHC2AQ641Q2 1341 aa11.05□□□□□ -0.64
VPS53-214ENST00000572607 TUBGCP6Q96RT7 1819 aa11.05□□□□□ -0.64
VPS53-214ENST00000572607 GOLGB1Q14789 3259 aaKnown RBP11.04□□□□□ -0.64
VPS53-214ENST00000572607 USHBP1Q8N6Y0 703 aa11.04□□□□□ -0.64
VPS53-214ENST00000572607 ACSBG1Q96GR2 724 aa11.04□□□□□ -0.64
VPS53-214ENST00000572607 BTAF1O14981 1849 aa11.04□□□□□ -0.64
VPS53-214ENST00000572607 QSER1Q2KHR3 1735 aa11.04□□□□□ -0.64
VPS53-214ENST00000572607 ZCRB1Q8TBF4 217 aaKnown RBP11.03□□□□□ -0.64
VPS53-214ENST00000572607 POLKQ9UBT6 870 aa11.03□□□□□ -0.64
VPS53-214ENST00000572607 SYT17Q9BSW7 474 aa11.02□□□□□ -0.65
VPS53-214ENST00000572607 MEGF6O75095 1541 aa11.02□□□□□ -0.65
VPS53-214ENST00000572607 CEP350Q5VT06 3117 aa11.02□□□□□ -0.65
VPS53-214ENST00000572607 ANKRD26Q9UPS8 1709 aa11.01□□□□□ -0.65
VPS53-214ENST00000572607 TXNRD1Q16881 649 aa11.01□□□□□ -0.65
VPS53-214ENST00000572607 FHDC1Q9C0D6 1143 aaPredicted RBP11.01□□□□□ -0.65
VPS53-214ENST00000572607 PCDH11XQ9BZA7 1347 aa11.01□□□□□ -0.65
VPS53-214ENST00000572607 PCDH11YQ9BZA8 1340 aa11.01□□□□□ -0.65
VPS53-214ENST00000572607 SHANK3Q9BYB0 1731 aa11.01□□□□□ -0.65
VPS53-214ENST00000572607 SLC15A2Q16348 729 aa11□□□□□ -0.65
VPS53-214ENST00000572607 SYTL4Q96C24 671 aaPredicted RBP11□□□□□ -0.65
VPS53-214ENST00000572607 MAP3K5Q99683 1374 aa11□□□□□ -0.65
VPS53-214ENST00000572607 EIF4A2Q14240 407 aaKnown RBP10.99□□□□□ -0.65
VPS53-214ENST00000572607 AMER1Q5JTC6 1135 aaPredicted RBP10.99□□□□□ -0.65
VPS53-214ENST00000572607 SPG7Q9UQ90 795 aa10.99□□□□□ -0.65
VPS53-214ENST00000572607 CC2D1BQ5T0F9 858 aaKnown RBP10.98□□□□□ -0.65
VPS53-214ENST00000572607 IFNLR1Q8IU57 520 aaPredicted RBP10.98□□□□□ -0.65
VPS53-214ENST00000572607 SPOCK2Q92563 424 aa10.98□□□□□ -0.65
VPS53-214ENST00000572607 EYA1Q99502 592 aa10.98□□□□□ -0.65
VPS53-214ENST00000572607 STK32BQ9NY57 414 aa10.98□□□□□ -0.65
VPS53-214ENST00000572607 ST18O60284 1047 aa10.97□□□□□ -0.65
VPS53-214ENST00000572607 ZNF827Q17R98 1081 aa10.97□□□□□ -0.65
VPS53-214ENST00000572607 MTFR1LQ9H019 292 aa10.97□□□□□ -0.65
VPS53-214ENST00000572607 RGPD2P0DJD1 1756 aa10.96□□□□□ -0.65
VPS53-214ENST00000572607 LY75O60449 1722 aa10.96□□□□□ -0.65
VPS53-214ENST00000572607 NCAPD2Q15021 1401 aa10.96□□□□□ -0.65
VPS53-214ENST00000572607 PER1O15534 1290 aaPredicted RBP10.96□□□□□ -0.65
VPS53-214ENST00000572607 PRIM1P49642 420 aaKnown RBP10.96□□□□□ -0.65
VPS53-214ENST00000572607 PSEN1P49768 467 aa10.96□□□□□ -0.65
VPS53-214ENST00000572607 C1QTNF8P60827 252 aa10.96□□□□□ -0.65
VPS53-214ENST00000572607 MKRN3Q13064 507 aaKnown RBP10.96□□□□□ -0.65
VPS53-214ENST00000572607 CNGB1Q14028 1251 aaPredicted RBP10.96□□□□□ -0.65
VPS53-214ENST00000572607 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.96□□□□□ -0.653e-6■■■□□ 15.8
VPS53-214ENST00000572607 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.96□□□□□ -0.65
VPS53-214ENST00000572607 PLEKHG2Q9H7P9 1386 aa10.95□□□□□ -0.66
VPS53-214ENST00000572607 NPC1L1Q9UHC9 1359 aa10.95□□□□□ -0.66
VPS53-214ENST00000572607 IGSF1Q8N6C5 1336 aa10.95□□□□□ -0.66
VPS53-214ENST00000572607 GOLGA2Q08379 1002 aa10.95□□□□□ -0.66
VPS53-214ENST00000572607 PDCD7Q8N8D1 485 aaKnown RBP10.95□□□□□ -0.66
VPS53-214ENST00000572607 LRRC4BQ9NT99 713 aa10.95□□□□□ -0.66
VPS53-214ENST00000572607 KAT6BQ8WYB5 2073 aa10.95□□□□□ -0.66
VPS53-214ENST00000572607 MAP2P11137 1827 aaKnown RBP10.95□□□□□ -0.66
VPS53-214ENST00000572607 SENP3-EIF4A1A0A087X0R7 540 aa10.94□□□□□ -0.66
VPS53-214ENST00000572607 PLEKHO1Q53GL0 409 aaPredicted RBP10.94□□□□□ -0.66
VPS53-214ENST00000572607 SLC27A3Q5K4L6 730 aa10.94□□□□□ -0.66
VPS53-214ENST00000572607 IFNL2Q8IZJ0 200 aa10.94□□□□□ -0.66
VPS53-214ENST00000572607 DOT1LQ8TEK3 1739 aa10.93□□□□□ -0.66
VPS53-214ENST00000572607 CYP27B1O15528 508 aa10.93□□□□□ -0.66
VPS53-214ENST00000572607 HSP90AB1P08238 724 aaKnown RBP10.93□□□□□ -0.66
VPS53-214ENST00000572607 HMGB2P26583 209 aaKnown RBP10.93□□□□□ -0.66
VPS53-214ENST00000572607 MTHFSP49914 203 aa10.93□□□□□ -0.66
VPS53-214ENST00000572607 MPRIPQ6WCQ1 1025 aa10.93□□□□□ -0.66
VPS53-214ENST00000572607 ARXQ96QS3 562 aa10.93□□□□□ -0.66
VPS53-214ENST00000572607 SNPHO15079 494 aa10.92□□□□□ -0.66
VPS53-214ENST00000572607 AMOTQ4VCS5 1084 aa10.92□□□□□ -0.66
VPS53-214ENST00000572607 SULT6B1Q6IMI4 303 aa10.92□□□□□ -0.66
VPS53-214ENST00000572607 CDAN1Q8IWY9 1227 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms