RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.38■□□□□ 0.05
CDRT1-206ENST00000571263 NFATC2IPQ8NCF5 419 aa15.38■□□□□ 0.05
CDRT1-206ENST00000571263 MRC1P22897 1456 aa15.38■□□□□ 0.05
CDRT1-206ENST00000571263 A0A0G2JS52 829 aa15.37■□□□□ 0.05
CDRT1-206ENST00000571263 HOXB7P09629 217 aa15.37■□□□□ 0.05
CDRT1-206ENST00000571263 MYT1Q01538 1121 aa15.37■□□□□ 0.05
CDRT1-206ENST00000571263 SHANK3Q9BYB0 1731 aa15.37■□□□□ 0.05
CDRT1-206ENST00000571263 TWISTNBQ3B726 338 aaPredicted RBP15.36■□□□□ 0.05
CDRT1-206ENST00000571263 ALDH1L2Q3SY69 923 aa15.36■□□□□ 0.05
CDRT1-206ENST00000571263 TTC5Q8N0Z6 440 aa15.36■□□□□ 0.05
CDRT1-206ENST00000571263 TMOD3Q9NYL9 352 aa15.36■□□□□ 0.05
CDRT1-206ENST00000571263 GLI3P10071 1580 aa15.36■□□□□ 0.05
CDRT1-206ENST00000571263 VAMP4O75379 141 aa15.35■□□□□ 0.05
CDRT1-206ENST00000571263 ZNF790Q6PG37 636 aa15.35■□□□□ 0.05
CDRT1-206ENST00000571263 SEPT12Q8IYM1 358 aa15.35■□□□□ 0.05
CDRT1-206ENST00000571263 MARCH10Q8NA82 808 aaPredicted RBP15.35■□□□□ 0.05
CDRT1-206ENST00000571263 THSD7AQ9UPZ6 1657 aa15.35■□□□□ 0.05
CDRT1-206ENST00000571263 BCL9O00512 1426 aa15.34■□□□□ 0.05
CDRT1-206ENST00000571263 EIF4A1P60842 406 aaKnown RBP15.34■□□□□ 0.05
CDRT1-206ENST00000571263 MIS18AQ9NYP9 233 aa15.34■□□□□ 0.05
CDRT1-206ENST00000571263 VIRMAQ69YN4 1812 aaKnown RBP15.33■□□□□ 0.05
CDRT1-206ENST00000571263 RXRBP28702 533 aa15.33■□□□□ 0.04
CDRT1-206ENST00000571263 RARSP54136 660 aaKnown RBP15.33■□□□□ 0.04
CDRT1-206ENST00000571263 SUPT16HQ9Y5B9 1047 aaKnown RBP15.33■□□□□ 0.04
CDRT1-206ENST00000571263 SIPA1L3O60292 1781 aaPredicted RBP15.33■□□□□ 0.04
CDRT1-206ENST00000571263 NEFLP07196 543 aa15.32■□□□□ 0.04
CDRT1-206ENST00000571263 BRPF1P55201 1214 aaPredicted RBP15.32■□□□□ 0.04
CDRT1-206ENST00000571263 C8orf58Q8NAV2 365 aa15.32■□□□□ 0.04
CDRT1-206ENST00000571263 FMNL2Q96PY5 1086 aa15.32■□□□□ 0.04
CDRT1-206ENST00000571263 RNF123Q5XPI4 1314 aa15.32■□□□□ 0.04
CDRT1-206ENST00000571263 KDM3BQ7LBC6 1761 aa15.31■□□□□ 0.04
CDRT1-206ENST00000571263 MS4A1P11836 297 aa15.31■□□□□ 0.04
CDRT1-206ENST00000571263 CCDC30Q5VVM6 783 aa15.31■□□□□ 0.04
CDRT1-206ENST00000571263 IPO8O15397 1037 aaKnown RBP15.3■□□□□ 0.04
CDRT1-206ENST00000571263 TEX13AQ9BXU3 409 aaPredicted RBP15.3■□□□□ 0.04
CDRT1-206ENST00000571263 HEG1Q9ULI3 1381 aa15.3■□□□□ 0.04
CDRT1-206ENST00000571263 ELL2O00472 640 aaPredicted RBP15.29■□□□□ 0.04
CDRT1-206ENST00000571263 SNRPA1P09661 255 aaKnown RBP15.29■□□□□ 0.04
CDRT1-206ENST00000571263 HMGB2P26583 209 aaKnown RBP15.29■□□□□ 0.04
CDRT1-206ENST00000571263 PRIM1P49642 420 aaKnown RBP15.29■□□□□ 0.04
CDRT1-206ENST00000571263 FAM196AQ6ZSG2 479 aa15.29■□□□□ 0.04
CDRT1-206ENST00000571263 VSIG10Q8N0Z9 540 aa15.29■□□□□ 0.04
CDRT1-206ENST00000571263 TSPYL6Q8N831 410 aa15.29■□□□□ 0.04
CDRT1-206ENST00000571263 PIGBQ92521 554 aa15.29■□□□□ 0.04
CDRT1-206ENST00000571263 SMARCC1Q92922 1105 aaPredicted RBP15.29■□□□□ 0.04
CDRT1-206ENST00000571263 STK31Q9BXU1 1019 aa15.29■□□□□ 0.04
CDRT1-206ENST00000571263 KIF16BQ96L93 1317 aa15.28■□□□□ 0.04
CDRT1-206ENST00000571263 GIGYF1O75420 1035 aaPredicted RBP15.28■□□□□ 0.04
CDRT1-206ENST00000571263 KRT27Q7Z3Y8 459 aa15.28■□□□□ 0.04
CDRT1-206ENST00000571263 SMC4Q9NTJ3 1288 aa15.28■□□□□ 0.04
CDRT1-206ENST00000571263 RRP1P56182 461 aaKnown RBP15.27■□□□□ 0.04
CDRT1-206ENST00000571263 ERICH6BQ5W0A0 696 aa15.27■□□□□ 0.04
CDRT1-206ENST00000571263 SSH1Q8WYL5 1049 aa15.27■□□□□ 0.04
CDRT1-206ENST00000571263 ARHGAP45Q92619 1136 aa15.27■□□□□ 0.04
CDRT1-206ENST00000571263 SYTL4Q96C24 671 aaPredicted RBP15.27■□□□□ 0.04
CDRT1-206ENST00000571263 KCNQ3O43525 872 aa15.26■□□□□ 0.03
CDRT1-206ENST00000571263 CANXP27824 592 aaKnown RBP15.26■□□□□ 0.03
CDRT1-206ENST00000571263 SLC39A6Q13433 755 aa15.26■□□□□ 0.03
CDRT1-206ENST00000571263 ZNF496Q96IT1 587 aaPredicted RBP15.26■□□□□ 0.03
CDRT1-206ENST00000571263 TOGARAM1Q9Y4F4 1720 aa15.26■□□□□ 0.03
CDRT1-206ENST00000571263 BCAR3O75815 825 aa15.25■□□□□ 0.03
CDRT1-206ENST00000571263 PDE3AQ14432 1141 aa15.25■□□□□ 0.03
CDRT1-206ENST00000571263 HDGFL1Q5TGJ6 251 aa15.25■□□□□ 0.03
CDRT1-206ENST00000571263 ZKSCAN2Q63HK3 967 aa15.25■□□□□ 0.03
CDRT1-206ENST00000571263 ATG3Q9NT62 314 aa15.25■□□□□ 0.03
CDRT1-206ENST00000571263 DBF4Q9UBU7 674 aaPredicted RBP15.25■□□□□ 0.03
CDRT1-206ENST00000571263 RGS17Q9UGC6 210 aaPredicted RBP15.25■□□□□ 0.03
CDRT1-206ENST00000571263 ERBB4Q15303 1308 aa15.24■□□□□ 0.03
CDRT1-206ENST00000571263 DOT1LQ8TEK3 1739 aa15.24■□□□□ 0.03
CDRT1-206ENST00000571263 KRT24Q2M2I5 525 aa15.24■□□□□ 0.03
CDRT1-206ENST00000571263 MRPL50Q8N5N7 158 aaKnown RBP15.24■□□□□ 0.03
CDRT1-206ENST00000571263 ITGB4P16144 1822 aa15.24■□□□□ 0.03
CDRT1-206ENST00000571263 PTPRCP08575 1304 aa15.23■□□□□ 0.03
CDRT1-206ENST00000571263 ACSBG1Q96GR2 724 aa15.23■□□□□ 0.03
CDRT1-206ENST00000571263 PAPPAQ13219 1627 aa15.23■□□□□ 0.03
CDRT1-206ENST00000571263 STARD3NLO95772 234 aa15.22■□□□□ 0.03
CDRT1-206ENST00000571263 SLC4A2P04920 1241 aa15.22■□□□□ 0.03
CDRT1-206ENST00000571263 FRAT1Q92837 279 aaPredicted RBP15.22■□□□□ 0.03
CDRT1-206ENST00000571263 API5Q9BZZ5 524 aaKnown RBP15.22■□□□□ 0.03
CDRT1-206ENST00000571263 BCL11BQ9C0K0 894 aaPredicted RBP15.22■□□□□ 0.03
CDRT1-206ENST00000571263 HYPKQ9NX55 129 aa15.22■□□□□ 0.03
CDRT1-206ENST00000571263 ASAP1Q9ULH1 1129 aa15.22■□□□□ 0.03
CDRT1-206ENST00000571263 UBR2Q8IWV8 1755 aa15.21■□□□□ 0.03
CDRT1-206ENST00000571263 EIF2S2P20042 333 aaKnown RBP15.21■□□□□ 0.03
CDRT1-206ENST00000571263 POTEAQ6S8J7 498 aa15.21■□□□□ 0.03
CDRT1-206ENST00000571263 ATF7IPQ6VMQ6 1270 aa15.21■□□□□ 0.03
CDRT1-206ENST00000571263 DDX21Q9NR30 783 aaKnown RBP eCLIP15.21■□□□□ 0.03
CDRT1-206ENST00000571263 NOB1Q9ULX3 412 aaKnown RBP15.21■□□□□ 0.03
CDRT1-206ENST00000571263 PTCD1O75127 700 aaKnown RBP15.2■□□□□ 0.02
CDRT1-206ENST00000571263 RBM42Q9BTD8 480 aaKnown RBP15.2■□□□□ 0.02
CDRT1-206ENST00000571263 CHMP4BQ9H444 224 aaKnown RBP15.2■□□□□ 0.02
CDRT1-206ENST00000571263 KCPQ6ZWJ8 1503 aa15.2■□□□□ 0.02
CDRT1-206ENST00000571263 NHSQ6T4R5 1651 aa15.19■□□□□ 0.02
CDRT1-206ENST00000571263 CACNA1FO60840 1977 aa15.19■□□□□ 0.02
CDRT1-206ENST00000571263 AAMPQ13685 434 aa15.19■□□□□ 0.02
CDRT1-206ENST00000571263 BCL2L13Q9BXK5 485 aa15.19■□□□□ 0.02
CDRT1-206ENST00000571263 KCNQ2O43526 872 aa15.18■□□□□ 0.02
CDRT1-206ENST00000571263 FTSJ3Q8IY81 847 aaKnown RBP15.18■□□□□ 0.02
CDRT1-206ENST00000571263 DZIP1LQ8IYY4 767 aaKnown RBP15.18■□□□□ 0.02
CDRT1-206ENST00000571263 USP16Q9Y5T5 823 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms