RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 RRP7AQ9Y3A4 280 aaKnown RBP8.55□□□□□ -1.04
VPS53-209ENST00000570771 ADAMTS7Q9UKP4 1686 aa8.54□□□□□ -1.04
VPS53-209ENST00000570771 THUMPD2Q9BTF0 503 aaKnown RBP8.54□□□□□ -1.04
VPS53-209ENST00000570771 THRAP3Q9Y2W1 955 aaKnown RBP8.54□□□□□ -1.04
VPS53-209ENST00000570771 KCNQ2O43526 872 aa8.53□□□□□ -1.04
VPS53-209ENST00000570771 PHKG2P15735 406 aa8.53□□□□□ -1.04
VPS53-209ENST00000570771 DCTN1Q14203 1278 aa8.53□□□□□ -1.04
VPS53-209ENST00000570771 FAM9BQ8IZU0 186 aa8.53□□□□□ -1.04
VPS53-209ENST00000570771 PNNQ9H307 717 aaKnown RBP8.53□□□□□ -1.04
VPS53-209ENST00000570771 DOT1LQ8TEK3 1739 aa8.53□□□□□ -1.04
VPS53-209ENST00000570771 A0A0G2JS52 829 aa8.52□□□□□ -1.05
VPS53-209ENST00000570771 TATP17735 454 aaPredicted RBP8.52□□□□□ -1.05
VPS53-209ENST00000570771 MYT1Q01538 1121 aa8.52□□□□□ -1.05
VPS53-209ENST00000570771 DDB1Q16531 1140 aa8.52□□□□□ -1.05
VPS53-209ENST00000570771 ZNF530Q6P9A1 599 aaPredicted RBP8.52□□□□□ -1.05
VPS53-209ENST00000570771 ZCRB1Q8TBF4 217 aaKnown RBP8.52□□□□□ -1.05
VPS53-209ENST00000570771 DDX54Q8TDD1 881 aaKnown RBP8.52□□□□□ -1.05
VPS53-209ENST00000570771 RAPGEF4Q8WZA2 1011 aa8.52□□□□□ -1.05
VPS53-209ENST00000570771 LGR6Q9HBX8 967 aa8.52□□□□□ -1.05
VPS53-209ENST00000570771 TNS1Q9HBL0 1735 aaKnown RBP8.51□□□□□ -1.05
VPS53-209ENST00000570771 MRC1P22897 1456 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 NEFMP07197 916 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 MPRIPQ6WCQ1 1025 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 KRT27Q7Z3Y8 459 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 IL17REQ8NFR9 667 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 ACSBG1Q96GR2 724 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 TRIM35Q9UPQ4 493 aa8.51□□□□□ -1.05
VPS53-209ENST00000570771 POTEFA5A3E0 1075 aa8.5□□□□□ -1.05
VPS53-209ENST00000570771 APAF1O14727 1248 aa8.5□□□□□ -1.05
VPS53-209ENST00000570771 FCHSD2O94868 740 aa8.5□□□□□ -1.05
VPS53-209ENST00000570771 MCM10Q7L590 875 aa8.5□□□□□ -1.05
VPS53-209ENST00000570771 PCDH11XQ9BZA7 1347 aa8.5□□□□□ -1.05
VPS53-209ENST00000570771 PCDH11YQ9BZA8 1340 aa8.5□□□□□ -1.05
VPS53-209ENST00000570771 NHSQ6T4R5 1651 aa8.49□□□□□ -1.05
VPS53-209ENST00000570771 CEMIPQ8WUJ3 1361 aa8.49□□□□□ -1.05
VPS53-209ENST00000570771 MAP3K5Q99683 1374 aa8.49□□□□□ -1.05
VPS53-209ENST00000570771 BCL9O00512 1426 aa8.49□□□□□ -1.05
VPS53-209ENST00000570771 EXOC5O00471 708 aa8.49□□□□□ -1.05
VPS53-209ENST00000570771 ATN1P54259 1190 aaPredicted RBP8.49□□□□□ -1.05
VPS53-209ENST00000570771 MMRN1Q13201 1228 aa8.49□□□□□ -1.05
VPS53-209ENST00000570771 NKX1-1Q15270 411 aaPredicted RBP8.49□□□□□ -1.05
VPS53-209ENST00000570771 PAPPAQ13219 1627 aa8.48□□□□□ -1.05
VPS53-209ENST00000570771 KCNQ3O43525 872 aa8.48□□□□□ -1.05
VPS53-209ENST00000570771 TMPOP42166 694 aaKnown RBP8.48□□□□□ -1.05
VPS53-209ENST00000570771 NFE2L2Q16236 605 aa8.48□□□□□ -1.05
VPS53-209ENST00000570771 NGEFQ8N5V2 710 aa8.48□□□□□ -1.05
VPS53-209ENST00000570771 CDCA7Q9BWT1 371 aaPredicted RBP8.48□□□□□ -1.05
VPS53-209ENST00000570771 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS53-209ENST00000570771 PLEKHG2Q9H7P9 1386 aa8.48□□□□□ -1.05
VPS53-209ENST00000570771 SBF2Q86WG5 1849 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 DLG5Q8TDM6 1919 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 RNMTO43148 476 aaKnown RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 TRIM37O94972 964 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 PRIM1P49642 420 aaKnown RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 MNX1P50219 401 aaPredicted RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 KCNQ4P56696 695 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 HNRNPUQ00839 825 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS53-209ENST00000570771 NEUROD2Q15784 382 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 PLEKHO1Q53GL0 409 aaPredicted RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 PIGBQ92521 554 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 RUNDC1Q96C34 613 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 YTHDC1Q96MU7 727 aaKnown RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 SLC4A9Q96Q91 983 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 SALL2Q9Y467 1007 aaPredicted RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 KCPQ6ZWJ8 1503 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 SIPA1L3O60292 1781 aaPredicted RBP8.47□□□□□ -1.05
VPS53-209ENST00000570771 ZNF521Q96K83 1311 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 MAPK8IP3Q9UPT6 1336 aa8.47□□□□□ -1.05
VPS53-209ENST00000570771 SCN11AQ9UI33 1791 aa8.46□□□□□ -1.05
VPS53-209ENST00000570771 PDE3BQ13370 1112 aa8.46□□□□□ -1.06
VPS53-209ENST00000570771 AKAP4Q5JQC9 854 aa8.46□□□□□ -1.06
VPS53-209ENST00000570771 DEFB132Q7Z7B7 95 aa8.46□□□□□ -1.06
VPS53-209ENST00000570771 IFNL2Q8IZJ0 200 aa8.46□□□□□ -1.06
VPS53-209ENST00000570771 MIS18AQ9NYP9 233 aa8.46□□□□□ -1.06
VPS53-209ENST00000570771 SPG7Q9UQ90 795 aa8.46□□□□□ -1.06
VPS53-209ENST00000570771 BTAF1O14981 1849 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 CENPBP07199 599 aaPredicted RBP8.45□□□□□ -1.06
VPS53-209ENST00000570771 SLC39A6Q13433 755 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 KRT24Q2M2I5 525 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 AMOTQ4VCS5 1084 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 AMIGO3Q86WK7 504 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 PROM2Q8N271 834 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 UPF1Q92900 1129 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS53-209ENST00000570771 ASAP1Q9ULH1 1129 aa8.45□□□□□ -1.06
VPS53-209ENST00000570771 SRCAPQ6ZRS2 3230 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 PRAMEF22A3QJZ6 481 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 GNAT3A8MTJ3 354 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 RIPK4P57078 832 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 SMIM5Q71RC9 77 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 SPNS2Q8IVW8 549 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 GAS2L2Q8NHY3 880 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 DCAF5Q96JK2 942 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 LRRC4BQ9NT99 713 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 ITGB4P16144 1822 aa8.44□□□□□ -1.06
VPS53-209ENST00000570771 NFATC2IPQ8NCF5 419 aa8.43□□□□□ -1.06
VPS53-209ENST00000570771 SYTL4Q96C24 671 aaPredicted RBP8.43□□□□□ -1.06
VPS53-209ENST00000570771 SLC52A2Q9HAB3 445 aa8.43□□□□□ -1.06
VPS53-209ENST00000570771 ATG3Q9NT62 314 aa8.43□□□□□ -1.06
VPS53-209ENST00000570771 ZBED9Q6R2W3 1325 aa8.43□□□□□ -1.06
VPS53-209ENST00000570771 TJP1Q07157 1748 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms