RNA–Protein interactions for RNA: ENST00000569575.5

RAB40C-212, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-212ENST00000569575 GOLGA2Q08379 1002 aa30.59■■■□□ 2.49
RAB40C-212ENST00000569575 SIPA1L3O60292 1781 aaPredicted RBP30.59■■■□□ 2.49
RAB40C-212ENST00000569575 HMGB2P26583 209 aaKnown RBP30.58■■■□□ 2.49
RAB40C-212ENST00000569575 CCDC125Q86Z20 511 aa30.58■■■□□ 2.49
RAB40C-212ENST00000569575 SALL2Q9Y467 1007 aaPredicted RBP30.58■■■□□ 2.49
RAB40C-212ENST00000569575 SMARCC1Q92922 1105 aaPredicted RBP30.57■■■□□ 2.48
RAB40C-212ENST00000569575 CHL1O00533 1208 aa30.56■■■□□ 2.48
RAB40C-212ENST00000569575 ZNF853P0CG23 659 aa30.56■■■□□ 2.48
RAB40C-212ENST00000569575 PIGBQ92521 554 aa30.56■■■□□ 2.48
RAB40C-212ENST00000569575 SYTL4Q96C24 671 aaPredicted RBP30.56■■■□□ 2.48
RAB40C-212ENST00000569575 BTBD11A6QL63 1104 aa30.55■■■□□ 2.48
RAB40C-212ENST00000569575 FAM182BQ5T319 152 aa30.55■■■□□ 2.48
RAB40C-212ENST00000569575 ACSBG1Q96GR2 724 aa30.55■■■□□ 2.48
RAB40C-212ENST00000569575 MYH16Q9H6N6 1097 aa30.55■■■□□ 2.48
RAB40C-212ENST00000569575 E9PSI1 815 aa30.54■■■□□ 2.48
RAB40C-212ENST00000569575 THUMPD2Q9BTF0 503 aaKnown RBP30.54■■■□□ 2.48
RAB40C-212ENST00000569575 ZNF790Q6PG37 636 aa30.51■■■□□ 2.47
RAB40C-212ENST00000569575 TTC5Q8N0Z6 440 aa30.51■■■□□ 2.47
RAB40C-212ENST00000569575 KCNQ2O43526 872 aa30.5■■■□□ 2.47
RAB40C-212ENST00000569575 TSPYL4Q9UJ04 414 aa30.5■■■□□ 2.47
RAB40C-212ENST00000569575 TRIM37O94972 964 aa30.49■■■□□ 2.47
RAB40C-212ENST00000569575 SLFN5Q08AF3 891 aa30.47■■■□□ 2.47
RAB40C-212ENST00000569575 CHMP4AQ9BY43 222 aa30.47■■■□□ 2.47
RAB40C-212ENST00000569575 SOS1Q07889 1333 aaPredicted RBP30.47■■■□□ 2.47
RAB40C-212ENST00000569575 BTAF1O14981 1849 aa30.46■■■□□ 2.47
RAB40C-212ENST00000569575 PLSCR1O15162 318 aa30.46■■■□□ 2.47
RAB40C-212ENST00000569575 ATG3Q9NT62 314 aa30.46■■■□□ 2.47
RAB40C-212ENST00000569575 PAPPAQ13219 1627 aa30.46■■■□□ 2.47
RAB40C-212ENST00000569575 KDM3BQ7LBC6 1761 aa30.46■■■□□ 2.47
RAB40C-212ENST00000569575 SENP3-EIF4A1A0A087X0R7 540 aa30.45■■■□□ 2.47
RAB40C-212ENST00000569575 SF3B2Q13435 895 aaKnown RBP30.45■■■□□ 2.47
RAB40C-212ENST00000569575 TRMT2AQ8IZ69 625 aaKnown RBP30.45■■■□□ 2.47
RAB40C-212ENST00000569575 VSIG10Q8N0Z9 540 aa30.45■■■□□ 2.47
RAB40C-212ENST00000569575 LAS1LQ9Y4W2 734 aaKnown RBP30.45■■■□□ 2.47
RAB40C-212ENST00000569575 MBIPQ9NS73 344 aa30.44■■■□□ 2.46
RAB40C-212ENST00000569575 FMNL2Q96PY5 1086 aa30.43■■■□□ 2.46
RAB40C-212ENST00000569575 TEX13AQ9BXU3 409 aaPredicted RBP30.42■■■□□ 2.46
RAB40C-212ENST00000569575 ASAP1Q9ULH1 1129 aa30.42■■■□□ 2.46
RAB40C-212ENST00000569575 UBR2Q8IWV8 1755 aa30.41■■■□□ 2.46
RAB40C-212ENST00000569575 ZNF831Q5JPB2 1677 aa30.41■■■□□ 2.46
RAB40C-212ENST00000569575 PALLDQ8WX93 1383 aa30.41■■■□□ 2.46
RAB40C-212ENST00000569575 HOXB7P09629 217 aa30.4■■■□□ 2.46
RAB40C-212ENST00000569575 EIF4A1P60842 406 aaKnown RBP30.4■■■□□ 2.46
RAB40C-212ENST00000569575 RGPD3A6NKT7 1758 aaPredicted RBP30.4■■■□□ 2.46
RAB40C-212ENST00000569575 RGPD4Q7Z3J3 1758 aa30.4■■■□□ 2.46
RAB40C-212ENST00000569575 APBA3O96018 575 aa30.39■■■□□ 2.46
RAB40C-212ENST00000569575 SLC39A6Q13433 755 aa30.39■■■□□ 2.46
RAB40C-212ENST00000569575 YTHDC1Q96MU7 727 aaKnown RBP30.39■■■□□ 2.46
RAB40C-212ENST00000569575 MIS18AQ9NYP9 233 aa30.39■■■□□ 2.46
RAB40C-212ENST00000569575 FANCIQ9NVI1 1328 aa30.39■■■□□ 2.46
RAB40C-212ENST00000569575 HEG1Q9ULI3 1381 aa30.39■■■□□ 2.45
RAB40C-212ENST00000569575 SLC27A3Q5K4L6 730 aa30.38■■■□□ 2.45
RAB40C-212ENST00000569575 TNS1Q9HBL0 1735 aaKnown RBP30.38■■■□□ 2.45
RAB40C-212ENST00000569575 SNRPA1P09661 255 aaKnown RBP30.37■■■□□ 2.45
RAB40C-212ENST00000569575 CT47B1P0C2W7 299 aaPredicted RBP30.37■■■□□ 2.45
RAB40C-212ENST00000569575 BAG6P46379 1132 aa30.37■■■□□ 2.45
RAB40C-212ENST00000569575 SPINK5Q9NQ38 1064 aaPredicted RBP30.37■■■□□ 2.45
RAB40C-212ENST00000569575 PTF1AQ7RTS3 328 aa30.36■■■□□ 2.45
RAB40C-212ENST00000569575 ZNF496Q96IT1 587 aaPredicted RBP30.36■■■□□ 2.45
RAB40C-212ENST00000569575 LY75O60449 1722 aa30.36■■■□□ 2.45
RAB40C-212ENST00000569575 LOC102724428A0A0B4J2F2 783 aa30.35■■■□□ 2.45
RAB40C-212ENST00000569575 SIK1P57059 783 aa30.35■■■□□ 2.45
RAB40C-212ENST00000569575 DUSP27Q5VZP5 1158 aa30.35■■■□□ 2.45
RAB40C-212ENST00000569575 KCPQ6ZWJ8 1503 aa30.35■■■□□ 2.45
RAB40C-212ENST00000569575 CICQ96RK0 1608 aaPredicted RBP30.34■■■□□ 2.45
RAB40C-212ENST00000569575 ZNF428Q96B54 188 aa30.34■■■□□ 2.45
RAB40C-212ENST00000569575 CDCA7LQ96GN5 454 aa30.34■■■□□ 2.45
RAB40C-212ENST00000569575 KCNQ3O43525 872 aa30.32■■■□□ 2.44
RAB40C-212ENST00000569575 PTCD1O75127 700 aaKnown RBP30.32■■■□□ 2.44
RAB40C-212ENST00000569575 GIGYF1O75420 1035 aaPredicted RBP30.32■■■□□ 2.44
RAB40C-212ENST00000569575 TSR2Q969E8 191 aaKnown RBP30.32■■■□□ 2.44
RAB40C-212ENST00000569575 RBM42Q9BTD8 480 aaKnown RBP30.32■■■□□ 2.44
RAB40C-212ENST00000569575 ILDR2Q71H61 639 aa30.3■■■□□ 2.44
RAB40C-212ENST00000569575 STARD3NLO95772 234 aa30.29■■■□□ 2.44
RAB40C-212ENST00000569575 ATP6V1AP38606 617 aa30.29■■■□□ 2.44
RAB40C-212ENST00000569575 UPF1Q92900 1129 aaKnown RBP eCLIP30.29■■■□□ 2.44
RAB40C-212ENST00000569575 CCNL1Q9UK58 526 aaPredicted RBP30.28■■■□□ 2.44
RAB40C-212ENST00000569575 EXOSC9Q06265 439 aaKnown RBP30.27■■■□□ 2.44
RAB40C-212ENST00000569575 TXNRD1Q16881 649 aa30.26■■■□□ 2.43
RAB40C-212ENST00000569575 TWISTNBQ3B726 338 aaPredicted RBP30.26■■■□□ 2.43
RAB40C-212ENST00000569575 CAMKK2Q96RR4 588 aa30.26■■■□□ 2.43
RAB40C-212ENST00000569575 ERBB4Q15303 1308 aa30.25■■■□□ 2.43
RAB40C-212ENST00000569575 C8orf58Q8NAV2 365 aa30.24■■■□□ 2.43
RAB40C-212ENST00000569575 EP400Q96L91 3159 aa30.24■■■□□ 2.43
RAB40C-212ENST00000569575 RC3H1Q5TC82 1133 aaKnown RBP30.23■■■□□ 2.43
RAB40C-212ENST00000569575 SLC4A9Q96Q91 983 aa30.23■■■□□ 2.43
RAB40C-212ENST00000569575 VAMP4O75379 141 aa30.22■■■□□ 2.43
RAB40C-212ENST00000569575 LAMB4A4D0S4 1761 aa30.21■■■□□ 2.43
RAB40C-212ENST00000569575 CCDC30Q5VVM6 783 aa30.21■■■□□ 2.43
RAB40C-212ENST00000569575 PROM2Q8N271 834 aa30.2■■■□□ 2.43
RAB40C-212ENST00000569575 C5P01031 1676 aa30.2■■■□□ 2.42
RAB40C-212ENST00000569575 CYP19A1P11511 503 aaPredicted RBP30.19■■■□□ 2.42
RAB40C-212ENST00000569575 EN1Q05925 392 aaPredicted RBP30.19■■■□□ 2.42
RAB40C-212ENST00000569575 DNAJC10Q8IXB1 793 aa30.19■■■□□ 2.42
RAB40C-212ENST00000569575 CNTNAP4Q9C0A0 1308 aa30.19■■■□□ 2.42
RAB40C-212ENST00000569575 TJP1Q07157 1748 aa30.19■■■□□ 2.42
RAB40C-212ENST00000569575 USP16Q9Y5T5 823 aa30.18■■■□□ 2.42
RAB40C-212ENST00000569575 CACNA1FO60840 1977 aa30.17■■■□□ 2.42
RAB40C-212ENST00000569575 TAF1LQ8IZX4 1826 aa30.17■■■□□ 2.42
RAB40C-212ENST00000569575 ITPK1Q13572 414 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms