RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 ATP6V1AP38606 617 aa24.76■■□□□ 1.55
CLN3-237ENST00000569030 MTHFSDQ2M296 383 aaKnown RBP24.76■■□□□ 1.55
CLN3-237ENST00000569030 AKAP4Q5JQC9 854 aa24.76■■□□□ 1.55
CLN3-237ENST00000569030 AMIGO3Q86WK7 504 aa24.76■■□□□ 1.55
CLN3-237ENST00000569030 NFATC2IPQ8NCF5 419 aa24.76■■□□□ 1.55
CLN3-237ENST00000569030 MSH5O43196 834 aa24.75■■□□□ 1.55
CLN3-237ENST00000569030 HMGB2P26583 209 aaKnown RBP24.75■■□□□ 1.55
CLN3-237ENST00000569030 SMIM5Q71RC9 77 aa24.75■■□□□ 1.55
CLN3-237ENST00000569030 SLC4A9Q96Q91 983 aa24.75■■□□□ 1.55
CLN3-237ENST00000569030 LGR6Q9HBX8 967 aa24.75■■□□□ 1.55
CLN3-237ENST00000569030 ZNF831Q5JPB2 1677 aa24.75■■□□□ 1.55
CLN3-237ENST00000569030 ARXQ96QS3 562 aa24.74■■□□□ 1.55
CLN3-237ENST00000569030 AK7Q96M32 723 aa24.73■■□□□ 1.55
CLN3-237ENST00000569030 FHDC1Q9C0D6 1143 aaPredicted RBP24.73■■□□□ 1.55
CLN3-237ENST00000569030 CFAP53Q96M91 514 aa24.72■■□□□ 1.55
CLN3-237ENST00000569030 RBM42Q9BTD8 480 aaKnown RBP24.72■■□□□ 1.55
CLN3-237ENST00000569030 ADAMTS7Q9UKP4 1686 aa24.72■■□□□ 1.55
CLN3-237ENST00000569030 SYT17Q9BSW7 474 aa24.71■■□□□ 1.55
CLN3-237ENST00000569030 COL5A3P25940 1745 aaPredicted RBP24.71■■□□□ 1.55
CLN3-237ENST00000569030 RNMTO43148 476 aaKnown RBP24.7■■□□□ 1.54
CLN3-237ENST00000569030 FLAD1Q8NFF5 587 aa24.7■■□□□ 1.54
CLN3-237ENST00000569030 MYH14Q7Z406 1995 aaKnown RBP24.69■■□□□ 1.54
CLN3-237ENST00000569030 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.68■■□□□ 1.54
CLN3-237ENST00000569030 PHF14O94880 888 aa24.68■■□□□ 1.54
CLN3-237ENST00000569030 POLD1P28340 1107 aa24.68■■□□□ 1.54
CLN3-237ENST00000569030 MSL1Q68DK7 614 aa24.68■■□□□ 1.54
CLN3-237ENST00000569030 SLC52A2Q9HAB3 445 aa24.68■■□□□ 1.54
CLN3-237ENST00000569030 PTCD1O75127 700 aaKnown RBP24.67■■□□□ 1.54
CLN3-237ENST00000569030 MRC1P22897 1456 aa24.66■■□□□ 1.54
CLN3-237ENST00000569030 GNPATO15228 680 aa24.66■■□□□ 1.54
CLN3-237ENST00000569030 PHACTR3Q96KR7 559 aa24.66■■□□□ 1.54
CLN3-237ENST00000569030 RSPH6AQ9H0K4 717 aa24.66■■□□□ 1.54
CLN3-237ENST00000569030 TJP1Q07157 1748 aa24.65■■□□□ 1.54
CLN3-237ENST00000569030 NUDCQ9Y266 331 aa24.65■■□□□ 1.54
CLN3-237ENST00000569030 SSFA2P28290 1259 aa24.64■■□□□ 1.54
CLN3-237ENST00000569030 PRKAR2BP31323 418 aa24.64■■□□□ 1.54
CLN3-237ENST00000569030 DDX10Q13206 875 aaKnown RBP24.64■■□□□ 1.54
CLN3-237ENST00000569030 U2AF1L5P0DN76 240 aaPredicted RBP24.63■■□□□ 1.53
CLN3-237ENST00000569030 U2AF1Q01081 240 aaKnown RBP eCLIP24.63■■□□□ 1.53
CLN3-237ENST00000569030 MAP3K5Q99683 1374 aa24.63■■□□□ 1.53
CLN3-237ENST00000569030 UTRNP46939 3433 aa24.63■■□□□ 1.53
CLN3-237ENST00000569030 SLC39A6Q13433 755 aa24.62■■□□□ 1.53
CLN3-237ENST00000569030 RC3H1Q5TC82 1133 aaKnown RBP24.62■■□□□ 1.53
CLN3-237ENST00000569030 GAS2L2Q8NHY3 880 aa24.62■■□□□ 1.53
CLN3-237ENST00000569030 GNAT3A8MTJ3 354 aa24.61■■□□□ 1.53
CLN3-237ENST00000569030 KLHL34Q8N239 644 aa24.61■■□□□ 1.53
CLN3-237ENST00000569030 IL17REQ8NFR9 667 aa24.61■■□□□ 1.53
CLN3-237ENST00000569030 SIPA1L3O60292 1781 aaPredicted RBP24.61■■□□□ 1.53
CLN3-237ENST00000569030 CICQ96RK0 1608 aaPredicted RBP24.61■■□□□ 1.53
CLN3-237ENST00000569030 CNTNAP4Q9C0A0 1308 aa24.6■■□□□ 1.53
CLN3-237ENST00000569030 UBR2Q8IWV8 1755 aa24.58■■□□□ 1.53
CLN3-237ENST00000569030 KCPQ6ZWJ8 1503 aa24.58■■□□□ 1.53
CLN3-237ENST00000569030 DCAF8L1A6NGE4 600 aa24.58■■□□□ 1.53
CLN3-237ENST00000569030 FCHSD2O94868 740 aa24.58■■□□□ 1.53
CLN3-237ENST00000569030 RTCBQ9Y3I0 505 aaKnown RBP24.58■■□□□ 1.53
CLN3-237ENST00000569030 GOLGB1Q14789 3259 aaKnown RBP24.57■■□□□ 1.52
CLN3-237ENST00000569030 C4AP0C0L4 1744 aa24.56■■□□□ 1.52
CLN3-237ENST00000569030 RPS6KA4O75676 772 aa24.56■■□□□ 1.52
CLN3-237ENST00000569030 CRKLP46109 303 aaKnown RBP24.56■■□□□ 1.52
CLN3-237ENST00000569030 TRAPPC3LQ5T215 181 aa24.56■■□□□ 1.52
CLN3-237ENST00000569030 NLGN2Q8NFZ4 835 aa24.56■■□□□ 1.52
CLN3-237ENST00000569030 DNAJC10Q8IXB1 793 aa24.55■■□□□ 1.52
CLN3-237ENST00000569030 ARHGEF1Q92888 912 aaKnown RBP24.55■■□□□ 1.52
CLN3-237ENST00000569030 DLG5Q8TDM6 1919 aa24.53■■□□□ 1.52
CLN3-237ENST00000569030 TEFQ10587 303 aa24.53■■□□□ 1.52
CLN3-237ENST00000569030 INTS5Q6P9B9 1019 aaKnown RBP24.53■■□□□ 1.52
CLN3-237ENST00000569030 CEMIPQ8WUJ3 1361 aa24.53■■□□□ 1.52
CLN3-237ENST00000569030 ADRA2BP18089 450 aa24.52■■□□□ 1.52
CLN3-237ENST00000569030 RALBP1Q15311 655 aa24.52■■□□□ 1.52
CLN3-237ENST00000569030 CYP19A1P11511 503 aaPredicted RBP24.5■■□□□ 1.51
CLN3-237ENST00000569030 RFC4P35249 363 aa24.49■■□□□ 1.51
CLN3-237ENST00000569030 CHD4Q14839 1912 aa24.49■■□□□ 1.51
CLN3-237ENST00000569030 GYS1P13807 737 aa24.48■■□□□ 1.51
CLN3-237ENST00000569030 ZNF790Q6PG37 636 aa24.48■■□□□ 1.51
CLN3-237ENST00000569030 MCM10Q7L590 875 aa24.48■■□□□ 1.51
CLN3-237ENST00000569030 TTC5Q8N0Z6 440 aa24.48■■□□□ 1.51
CLN3-237ENST00000569030 VSIG10Q8N0Z9 540 aa24.48■■□□□ 1.51
CLN3-237ENST00000569030 CCDC87Q9NVE4 849 aa24.48■■□□□ 1.51
CLN3-237ENST00000569030 ZNF496Q96IT1 587 aaPredicted RBP24.47■■□□□ 1.51
CLN3-237ENST00000569030 PLEKHF1Q96S99 279 aa24.47■■□□□ 1.51
CLN3-237ENST00000569030 CD2APQ9Y5K6 639 aa24.47■■□□□ 1.51
CLN3-237ENST00000569030 MMP10P09238 476 aa24.46■■□□□ 1.51
CLN3-237ENST00000569030 DCTN1Q14203 1278 aa24.46■■□□□ 1.51
CLN3-237ENST00000569030 SRP68Q9UHB9 627 aaKnown RBP24.46■■□□□ 1.51
CLN3-237ENST00000569030 KCNQ3O43525 872 aa24.45■■□□□ 1.5
CLN3-237ENST00000569030 YY1P25490 414 aa24.45■■□□□ 1.5
CLN3-237ENST00000569030 GPR162Q16538 588 aa24.45■■□□□ 1.5
CLN3-237ENST00000569030 NLGN1Q8N2Q7 840 aa24.45■■□□□ 1.5
CLN3-237ENST00000569030 RTF1Q92541 710 aaKnown RBP24.45■■□□□ 1.5
CLN3-237ENST00000569030 BTBD11A6QL63 1104 aa24.44■■□□□ 1.5
CLN3-237ENST00000569030 ZEB1P37275 1124 aaPredicted RBP24.44■■□□□ 1.5
CLN3-237ENST00000569030 SOS1Q07889 1333 aaPredicted RBP24.43■■□□□ 1.5
CLN3-237ENST00000569030 HTATSF1O43719 755 aaKnown RBP24.43■■□□□ 1.5
CLN3-237ENST00000569030 PELP1Q8IZL8 1130 aaKnown RBP24.43■■□□□ 1.5
CLN3-237ENST00000569030 ZBTB1Q9Y2K1 713 aa24.43■■□□□ 1.5
CLN3-237ENST00000569030 HEG1Q9ULI3 1381 aa24.42■■□□□ 1.5
CLN3-237ENST00000569030 KIF13BQ9NQT8 1826 aa24.42■■□□□ 1.5
CLN3-237ENST00000569030 MYBBP1AQ9BQG0 1328 aaKnown RBP24.42■■□□□ 1.5
CLN3-237ENST00000569030 USP42Q9H9J4 1324 aaKnown RBP24.42■■□□□ 1.5
CLN3-237ENST00000569030 YBX3P16989 372 aaKnown RBP eCLIP24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 162.6 ms