RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TRIM50Q86XT4 487 aa6.3□□□□□ -1.4
VPS35-207ENST00000568191 NUCKS1Q9H1E3 243 aaKnown RBP6.3□□□□□ -1.4
VPS35-207ENST00000568191 ENAMQ9NRM1 1142 aa6.3□□□□□ -1.4
VPS35-207ENST00000568191 INHAP05111 366 aa6.29□□□□□ -1.4
VPS35-207ENST00000568191 PHKA2P46019 1235 aa6.29□□□□□ -1.4
VPS35-207ENST00000568191 SRSF11Q05519 484 aaKnown RBP6.29□□□□□ -1.4
VPS35-207ENST00000568191 LBRQ14739 615 aaKnown RBP6.29□□□□□ -1.4
VPS35-207ENST00000568191 EFHC2Q5JST6 749 aa6.29□□□□□ -1.4
VPS35-207ENST00000568191 PPARGC1BQ86YN6 1023 aaKnown RBP6.29□□□□□ -1.4
VPS35-207ENST00000568191 SVOPQ8N4V2 548 aa6.29□□□□□ -1.4
VPS35-207ENST00000568191 ZNF837Q96EG3 531 aaPredicted RBP6.29□□□□□ -1.4
VPS35-207ENST00000568191 POM121Q96HA1 1249 aa6.29□□□□□ -1.4
VPS35-207ENST00000568191 NIFKQ9BYG3 293 aaKnown RBP6.29□□□□□ -1.4
VPS35-207ENST00000568191 ETNK1Q9HBU6 452 aa6.29□□□□□ -1.4
VPS35-207ENST00000568191 RBM19Q9Y4C8 960 aaKnown RBP6.29□□□□□ -1.4
VPS35-207ENST00000568191 RNF225M0QZC1 329 aaPredicted RBP6.28□□□□□ -1.4
VPS35-207ENST00000568191 ATP1A2P50993 1020 aa6.28□□□□□ -1.4
VPS35-207ENST00000568191 DBN1Q16643 649 aa6.28□□□□□ -1.4
VPS35-207ENST00000568191 HDGFL1Q5TGJ6 251 aa6.28□□□□□ -1.4
VPS35-207ENST00000568191 TBC1D9Q6ZT07 1266 aa6.28□□□□□ -1.4
VPS35-207ENST00000568191 C1orf216Q8TAB5 229 aa6.28□□□□□ -1.4
VPS35-207ENST00000568191 GTPBP3Q969Y2 492 aaKnown RBP6.28□□□□□ -1.4
VPS35-207ENST00000568191 MBIPQ9NS73 344 aa6.28□□□□□ -1.4
VPS35-207ENST00000568191 SLURP2P0DP57 97 aa6.27□□□□□ -1.41
VPS35-207ENST00000568191 SMTNP53814 917 aa6.27□□□□□ -1.41
VPS35-207ENST00000568191 NBPF1Q3BBV0 1214 aa6.27□□□□□ -1.41
VPS35-207ENST00000568191 FHDC1Q9C0D6 1143 aaPredicted RBP6.27□□□□□ -1.41
VPS35-207ENST00000568191 GPAMQ9HCL2 828 aa6.27□□□□□ -1.41
VPS35-207ENST00000568191 CUEDC1Q9NWM3 386 aaPredicted RBP6.27□□□□□ -1.41
VPS35-207ENST00000568191 HRH3Q9Y5N1 445 aa6.27□□□□□ -1.41
VPS35-207ENST00000568191 USP17L5A8MUK1 530 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 ADAMTS2O95450 1211 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 MX2P20592 715 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 MARSP56192 900 aaKnown RBP6.26□□□□□ -1.41
VPS35-207ENST00000568191 GTF2IP78347 998 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 KRT76Q01546 638 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 C4orf17Q53FE4 359 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 RNFT1Q5M7Z0 435 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 AIDAQ96BJ3 306 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 CFHR5Q9BXR6 569 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 SERTAD1Q9UHV2 236 aa6.26□□□□□ -1.41
VPS35-207ENST00000568191 PIK3CDO00329 1044 aa6.25□□□□□ -1.41
VPS35-207ENST00000568191 CDK2AP1O14519 115 aa6.25□□□□□ -1.41
VPS35-207ENST00000568191 TATP17735 454 aaPredicted RBP6.25□□□□□ -1.41
VPS35-207ENST00000568191 LORP23490 312 aaPredicted RBP6.25□□□□□ -1.41
VPS35-207ENST00000568191 MSX1P28360 303 aa6.25□□□□□ -1.41
VPS35-207ENST00000568191 NCOA4Q13772 614 aa6.25□□□□□ -1.41
VPS35-207ENST00000568191 FIGNL1Q6PIW4 674 aa6.25□□□□□ -1.41
VPS35-207ENST00000568191 PROSER2Q86WR7 435 aaPredicted RBP6.25□□□□□ -1.41
VPS35-207ENST00000568191 A6NJY4 79 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 GPR25O00155 361 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 MAP2K3P46734 347 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 PLA2G4AP47712 749 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 SCNN1DP51172 638 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 SLC4A9Q96Q91 983 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 CABP1Q9NZU7 370 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 CHMP3Q9Y3E7 222 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 PCDHGA11Q9Y5H2 935 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 GJA3Q9Y6H8 435 aa6.24□□□□□ -1.41
VPS35-207ENST00000568191 IGF1RP08069 1367 aa6.23□□□□□ -1.41
VPS35-207ENST00000568191 ATP9BO43861 1147 aa6.23□□□□□ -1.41
VPS35-207ENST00000568191 ARSJQ5FYB0 599 aaPredicted RBP6.23□□□□□ -1.41
VPS35-207ENST00000568191 PLEKHM2Q8IWE5 1019 aa6.23□□□□□ -1.41
VPS35-207ENST00000568191 RUBCNLQ9H714 662 aa6.23□□□□□ -1.41
VPS35-207ENST00000568191 NEUROD4Q9HD90 331 aa6.23□□□□□ -1.41
VPS35-207ENST00000568191 ADAMTS8Q9UP79 889 aa6.23□□□□□ -1.41
VPS35-207ENST00000568191 USP17L3A6NCW0 530 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 USP17L4A6NCW7 530 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 POM121CA8CG34 1229 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 STAU1O95793 577 aaKnown RBP6.22□□□□□ -1.41
VPS35-207ENST00000568191 GAS6Q14393 721 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 ZNF385CQ66K41 422 aaPredicted RBP6.22□□□□□ -1.41
VPS35-207ENST00000568191 USP17L2Q6R6M4 530 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 USP17L1Q7RTZ2 530 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 NLRP8Q86W28 1048 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 DEPDC4Q8N2C3 294 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 CLUAP1Q96AJ1 413 aa6.22□□□□□ -1.41
VPS35-207ENST00000568191 SCARF2Q96GP6 870 aaPredicted RBP6.22□□□□□ -1.41
VPS35-207ENST00000568191 CALR3Q96L12 384 aaKnown RBP6.22□□□□□ -1.41
VPS35-207ENST00000568191 ATXN7L1Q9ULK2 861 aaPredicted RBP6.22□□□□□ -1.41
VPS35-207ENST00000568191 PALM3A6NDB9 673 aaPredicted RBP6.21□□□□□ -1.42
VPS35-207ENST00000568191 A6NJR5 290 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 TMEM229AB2RXF0 380 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 BCRP11274 1271 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 MTFR1Q15390 333 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 BICDL1Q6ZP65 573 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 PODNQ7Z5L7 613 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 NEDD1Q8NHV4 660 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 CRISPLD1Q9H336 500 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 LRRC4BQ9NT99 713 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 DNAAF2Q9NVR5 837 aaKnown RBP6.21□□□□□ -1.42
VPS35-207ENST00000568191 ZDHHC3Q9NYG2 299 aa6.21□□□□□ -1.42
VPS35-207ENST00000568191 CELA2BP08218 269 aaPredicted RBP6.2□□□□□ -1.42
VPS35-207ENST00000568191 CCDC102BQ68D86 513 aa6.2□□□□□ -1.42
VPS35-207ENST00000568191 LARGE2Q8N3Y3 721 aa6.2□□□□□ -1.42
VPS35-207ENST00000568191 TPCN2Q8NHX9 752 aa6.2□□□□□ -1.42
VPS35-207ENST00000568191 GLMNQ92990 594 aa6.2□□□□□ -1.42
VPS35-207ENST00000568191 MKRN1Q9UHC7 482 aaKnown RBP6.2□□□□□ -1.42
VPS35-207ENST00000568191 GDF2Q9UK05 429 aaPredicted RBP6.2□□□□□ -1.42
VPS35-207ENST00000568191 PCDHGC4Q9Y5F7 938 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms