RNA–Protein interactions for RNA: ENST00000567071.5

CAPN3-216, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-216ENST00000567071 MPRIPQ6WCQ1 1025 aa13.99□□□□□ -0.17
CAPN3-216ENST00000567071 PARP3Q9Y6F1 533 aa13.99□□□□□ -0.17
CAPN3-216ENST00000567071 HSPA8P11142 646 aaKnown RBP13.98□□□□□ -0.17
CAPN3-216ENST00000567071 NCBP3Q53F19 620 aaKnown RBP13.98□□□□□ -0.17
CAPN3-216ENST00000567071 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.98□□□□□ -0.17
CAPN3-216ENST00000567071 USP31Q70CQ4 1352 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 CGNL1Q0VF96 1302 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 LMNB1P20700 586 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 CHADLQ6NUI6 762 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 DPY19L2Q6NUT2 758 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 IP6K1Q92551 441 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 C4AP0C0L4 1744 aa13.97□□□□□ -0.17
CAPN3-216ENST00000567071 VEGFBP49765 207 aa13.96□□□□□ -0.17
CAPN3-216ENST00000567071 MAP2K1Q02750 393 aaPredicted RBP13.96□□□□□ -0.17
CAPN3-216ENST00000567071 KCNA3P22001 575 aa13.95□□□□□ -0.18
CAPN3-216ENST00000567071 RAPGEF4Q8WZA2 1011 aa13.95□□□□□ -0.18
CAPN3-216ENST00000567071 TNRC18O15417 2968 aaPredicted RBP13.95□□□□□ -0.18
CAPN3-216ENST00000567071 MEGF6O75095 1541 aa13.95□□□□□ -0.18
CAPN3-216ENST00000567071 VIRMAQ69YN4 1812 aaKnown RBP13.94□□□□□ -0.18
CAPN3-216ENST00000567071 TRAPPC3LQ5T215 181 aa13.94□□□□□ -0.18
CAPN3-216ENST00000567071 MON2Q7Z3U7 1717 aa13.94□□□□□ -0.18
CAPN3-216ENST00000567071 BEGAINQ9BUH8 593 aa13.94□□□□□ -0.18
CAPN3-216ENST00000567071 PCDH11XQ9BZA7 1347 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 PCDH11YQ9BZA8 1340 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 TIAM2Q8IVF5 1701 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 LOC102724428A0A0B4J2F2 783 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 SIK1P57059 783 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 RASSF7Q02833 373 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 LINC00116Q8NCU8 138 aa13.93□□□□□ -0.18
CAPN3-216ENST00000567071 RTCBQ9Y3I0 505 aaKnown RBP13.93□□□□□ -0.18
CAPN3-216ENST00000567071 KDM6AO15550 1401 aaPredicted RBP13.92□□□□□ -0.18
CAPN3-216ENST00000567071 NPM3O75607 178 aaKnown RBP13.92□□□□□ -0.18
CAPN3-216ENST00000567071 NME9Q86XW9 330 aa13.92□□□□□ -0.18
CAPN3-216ENST00000567071 ITGB4P16144 1822 aa13.92□□□□□ -0.18
CAPN3-216ENST00000567071 TMEM88BA6NKF7 163 aa13.91□□□□□ -0.18
CAPN3-216ENST00000567071 TATP17735 454 aaPredicted RBP13.91□□□□□ -0.18
CAPN3-216ENST00000567071 RFC4P35249 363 aa13.9□□□□□ -0.18
CAPN3-216ENST00000567071 NBPF1Q3BBV0 1214 aa13.9□□□□□ -0.18
CAPN3-216ENST00000567071 RGPD2P0DJD1 1756 aa13.9□□□□□ -0.18
CAPN3-216ENST00000567071 CCDC88AQ3V6T2 1871 aa13.9□□□□□ -0.18
CAPN3-216ENST00000567071 ATP6V1AP38606 617 aa13.89□□□□□ -0.19
CAPN3-216ENST00000567071 AMPHP49418 695 aa13.89□□□□□ -0.19
CAPN3-216ENST00000567071 MAP2P11137 1827 aaKnown RBP13.88□□□□□ -0.19
CAPN3-216ENST00000567071 PRPF38BQ5VTL8 546 aaKnown RBP13.88□□□□□ -0.19
CAPN3-216ENST00000567071 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 POTECB2RU33 542 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 GYS1P13807 737 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 KCNA4P22459 653 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 CHRNA5P30532 468 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 DEFB115Q30KQ5 88 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 PIGBQ92521 554 aa13.87□□□□□ -0.19
CAPN3-216ENST00000567071 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
CAPN3-216ENST00000567071 SMG6Q86US8 1419 aaKnown RBP13.86□□□□□ -0.19
CAPN3-216ENST00000567071 PASKQ96RG2 1323 aa13.86□□□□□ -0.19
CAPN3-216ENST00000567071 HOXC9P31274 260 aa13.85□□□□□ -0.19
CAPN3-216ENST00000567071 ITPK1Q13572 414 aa13.85□□□□□ -0.19
CAPN3-216ENST00000567071 LDHDQ86WU2 507 aa13.85□□□□□ -0.19
CAPN3-216ENST00000567071 ARHGEF1Q92888 912 aaKnown RBP13.85□□□□□ -0.19
CAPN3-216ENST00000567071 WDR33Q9C0J8 1336 aaKnown RBP13.85□□□□□ -0.19
CAPN3-216ENST00000567071 IQCA1LA6NCM1 817 aa13.84□□□□□ -0.19
CAPN3-216ENST00000567071 RASSF10A6NK89 507 aa13.84□□□□□ -0.19
CAPN3-216ENST00000567071 MCOLN1Q9GZU1 580 aa13.84□□□□□ -0.19
CAPN3-216ENST00000567071 TMOD3Q9NYL9 352 aa13.84□□□□□ -0.19
CAPN3-216ENST00000567071 SBNO2Q9Y2G9 1366 aa13.83□□□□□ -0.19
CAPN3-216ENST00000567071 EDC4Q6P2E9 1401 aaKnown RBP13.83□□□□□ -0.2
CAPN3-216ENST00000567071 USHBP1Q8N6Y0 703 aa13.83□□□□□ -0.2
CAPN3-216ENST00000567071 POTEIP0CG38 1075 aa13.82□□□□□ -0.2
CAPN3-216ENST00000567071 POTEJP0CG39 1038 aa13.82□□□□□ -0.2
CAPN3-216ENST00000567071 ERFEQ4G0M1 354 aa13.82□□□□□ -0.2
CAPN3-216ENST00000567071 NBPF6Q5VWK0 638 aa13.82□□□□□ -0.2
CAPN3-216ENST00000567071 NBPF4Q96M43 638 aa13.82□□□□□ -0.2
CAPN3-216ENST00000567071 ABT1Q9ULW3 272 aaKnown RBP13.82□□□□□ -0.2
CAPN3-216ENST00000567071 MAP3K19Q56UN5 1328 aa13.82□□□□□ -0.2
CAPN3-216ENST00000567071 CYP27B1O15528 508 aa13.81□□□□□ -0.2
CAPN3-216ENST00000567071 RC3H1Q5TC82 1133 aaKnown RBP13.81□□□□□ -0.2
CAPN3-216ENST00000567071 TTLL6Q8N841 843 aa13.81□□□□□ -0.2
CAPN3-216ENST00000567071 DICER1Q9UPY3 1922 aaKnown RBP13.81□□□□□ -0.2
CAPN3-216ENST00000567071 RPS6KA4O75676 772 aa13.8□□□□□ -0.2
CAPN3-216ENST00000567071 ECE1P42892 770 aa13.8□□□□□ -0.2
CAPN3-216ENST00000567071 PAXIP1Q6ZW49 1069 aaPredicted RBP13.8□□□□□ -0.2
CAPN3-216ENST00000567071 TMC1Q8TDI8 760 aa13.8□□□□□ -0.2
CAPN3-216ENST00000567071 GCC1Q96CN9 775 aa13.8□□□□□ -0.2
CAPN3-216ENST00000567071 ASAP1Q9ULH1 1129 aa13.8□□□□□ -0.2
CAPN3-216ENST00000567071 RTL1A6NKG5 1358 aa13.8□□□□□ -0.2
CAPN3-216ENST00000567071 COG3Q96JB2 828 aa13.79□□□□□ -0.2
CAPN3-216ENST00000567071 TERF2IPQ9NYB0 399 aa13.79□□□□□ -0.2
CAPN3-216ENST00000567071 CLEC11AQ9Y240 323 aa13.79□□□□□ -0.2
CAPN3-216ENST00000567071 NFKBIEO00221 500 aa13.78□□□□□ -0.2
CAPN3-216ENST00000567071 DGKZQ13574 1117 aa13.78□□□□□ -0.2
CAPN3-216ENST00000567071 EAPPQ56P03 285 aaPredicted RBP13.78□□□□□ -0.2
CAPN3-216ENST00000567071 ZNF219Q9P2Y4 722 aaPredicted RBP13.78□□□□□ -0.2
CAPN3-216ENST00000567071 CNTNAP4Q9C0A0 1308 aa13.78□□□□□ -0.2
CAPN3-216ENST00000567071 SCN4AP35499 1836 aa13.78□□□□□ -0.2
CAPN3-216ENST00000567071 CA12O43570 354 aa13.77□□□□□ -0.21
CAPN3-216ENST00000567071 DDNO94850 711 aaPredicted RBP13.77□□□□□ -0.21
CAPN3-216ENST00000567071 DDR1Q08345 913 aa13.77□□□□□ -0.21
CAPN3-216ENST00000567071 RBM42Q9BTD8 480 aaKnown RBP13.77□□□□□ -0.21
CAPN3-216ENST00000567071 SPG7Q9UQ90 795 aa13.77□□□□□ -0.21
CAPN3-216ENST00000567071 CASP8AP2Q9UKL3 1982 aa13.76□□□□□ -0.21
CAPN3-216ENST00000567071 ITGBL1O95965 494 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms