RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 CFAP44Q96MT7 982 aa14.52□□□□□ -0.09
CLN3-224ENST00000566816 ZNF521Q96K83 1311 aa14.51□□□□□ -0.09
CLN3-224ENST00000566816 ZNF853P0CG23 659 aa14.51□□□□□ -0.09
CLN3-224ENST00000566816 IFT57Q9NWB7 429 aa14.51□□□□□ -0.09
CLN3-224ENST00000566816 BTBD11A6QL63 1104 aa14.5□□□□□ -0.09
CLN3-224ENST00000566816 APBA3O96018 575 aa14.5□□□□□ -0.09
CLN3-224ENST00000566816 GNAI1P63096 354 aa14.5□□□□□ -0.09
CLN3-224ENST00000566816 ZNF790Q6PG37 636 aa14.5□□□□□ -0.09
CLN3-224ENST00000566816 ATG3Q9NT62 314 aa14.5□□□□□ -0.09
CLN3-224ENST00000566816 BAG6P46379 1132 aa14.49□□□□□ -0.09
CLN3-224ENST00000566816 SLC27A3Q5K4L6 730 aa14.49□□□□□ -0.09
CLN3-224ENST00000566816 PTF1AQ7RTS3 328 aa14.49□□□□□ -0.09
CLN3-224ENST00000566816 VSIG10Q8N0Z9 540 aa14.49□□□□□ -0.09
CLN3-224ENST00000566816 SCN11AQ9UI33 1791 aa14.49□□□□□ -0.09
CLN3-224ENST00000566816 THUMPD2Q9BTF0 503 aaKnown RBP14.48□□□□□ -0.09
CLN3-224ENST00000566816 ASAP1Q9ULH1 1129 aa14.48□□□□□ -0.09
CLN3-224ENST00000566816 NHSQ6T4R5 1651 aa14.48□□□□□ -0.09
CLN3-224ENST00000566816 TTC5Q8N0Z6 440 aa14.47□□□□□ -0.09
CLN3-224ENST00000566816 CAMKK2Q96RR4 588 aa14.47□□□□□ -0.09
CLN3-224ENST00000566816 SBF2Q86WG5 1849 aa14.47□□□□□ -0.09
CLN3-224ENST00000566816 GOLGA2Q08379 1002 aa14.46□□□□□ -0.09
CLN3-224ENST00000566816 TEX13AQ9BXU3 409 aaPredicted RBP14.46□□□□□ -0.09
CLN3-224ENST00000566816 PALLDQ8WX93 1383 aa14.46□□□□□ -0.1
CLN3-224ENST00000566816 LOC102724428A0A0B4J2F2 783 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 SIK1P57059 783 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 HNRNPUQ00839 825 aaKnown RBP eCLIP14.45□□□□□ -0.1
CLN3-224ENST00000566816 PROM2Q8N271 834 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 FMNL2Q96PY5 1086 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 CHMP4AQ9BY43 222 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 TSPYL4Q9UJ04 414 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 TOGARAM1Q9Y4F4 1720 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 HEG1Q9ULI3 1381 aa14.45□□□□□ -0.1
CLN3-224ENST00000566816 SOS1Q07889 1333 aaPredicted RBP14.44□□□□□ -0.1
CLN3-224ENST00000566816 ZBED9Q6R2W3 1325 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 E9PSI1 815 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 SOCS7O14512 581 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 EIF4A1P60842 406 aaKnown RBP14.44□□□□□ -0.1
CLN3-224ENST00000566816 TXNRD1Q16881 649 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 TRMT2AQ8IZ69 625 aaKnown RBP14.44□□□□□ -0.1
CLN3-224ENST00000566816 MYH16Q9H6N6 1097 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 SALL2Q9Y467 1007 aaPredicted RBP14.44□□□□□ -0.1
CLN3-224ENST00000566816 DLG5Q8TDM6 1919 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 DOT1LQ8TEK3 1739 aa14.44□□□□□ -0.1
CLN3-224ENST00000566816 KAT6BQ8WYB5 2073 aa14.43□□□□□ -0.1
CLN3-224ENST00000566816 HOXB7P09629 217 aa14.43□□□□□ -0.1
CLN3-224ENST00000566816 SLC39A6Q13433 755 aa14.43□□□□□ -0.1
CLN3-224ENST00000566816 ZNF496Q96IT1 587 aaPredicted RBP14.43□□□□□ -0.1
CLN3-224ENST00000566816 MIS18AQ9NYP9 233 aa14.43□□□□□ -0.1
CLN3-224ENST00000566816 SNRPA1P09661 255 aaKnown RBP14.42□□□□□ -0.1
CLN3-224ENST00000566816 EN1Q05925 392 aaPredicted RBP14.42□□□□□ -0.1
CLN3-224ENST00000566816 SLFN5Q08AF3 891 aa14.42□□□□□ -0.1
CLN3-224ENST00000566816 MBIPQ9NS73 344 aa14.42□□□□□ -0.1
CLN3-224ENST00000566816 ITGB4P16144 1822 aa14.42□□□□□ -0.1
CLN3-224ENST00000566816 KCNQ3O43525 872 aa14.41□□□□□ -0.1
CLN3-224ENST00000566816 PTCD1O75127 700 aaKnown RBP14.41□□□□□ -0.1
CLN3-224ENST00000566816 GIGYF1O75420 1035 aaPredicted RBP14.41□□□□□ -0.1
CLN3-224ENST00000566816 ATP6V1AP38606 617 aa14.41□□□□□ -0.1
CLN3-224ENST00000566816 RC3H1Q5TC82 1133 aaKnown RBP14.41□□□□□ -0.1
CLN3-224ENST00000566816 SLC4A9Q96Q91 983 aa14.41□□□□□ -0.1
CLN3-224ENST00000566816 CCNL1Q9UK58 526 aaPredicted RBP14.41□□□□□ -0.1
CLN3-224ENST00000566816 SIPA1L3O60292 1781 aaPredicted RBP14.41□□□□□ -0.1
CLN3-224ENST00000566816 STARD3NLO95772 234 aa14.4□□□□□ -0.1
CLN3-224ENST00000566816 EZH2Q15910 746 aaKnown RBP14.4□□□□□ -0.1
CLN3-224ENST00000566816 DEFB132Q7Z7B7 95 aa14.4□□□□□ -0.1
CLN3-224ENST00000566816 RBM42Q9BTD8 480 aaKnown RBP14.4□□□□□ -0.1
CLN3-224ENST00000566816 LRRC4BQ9NT99 713 aa14.4□□□□□ -0.1
CLN3-224ENST00000566816 LAS1LQ9Y4W2 734 aaKnown RBP14.4□□□□□ -0.1
CLN3-224ENST00000566816 BTAF1O14981 1849 aa14.4□□□□□ -0.1
CLN3-224ENST00000566816 SPINK5Q9NQ38 1064 aaPredicted RBP14.39□□□□□ -0.11
CLN3-224ENST00000566816 RGPD3A6NKT7 1758 aaPredicted RBP14.39□□□□□ -0.11
CLN3-224ENST00000566816 RGPD4Q7Z3J3 1758 aa14.39□□□□□ -0.11
CLN3-224ENST00000566816 TNS1Q9HBL0 1735 aaKnown RBP14.38□□□□□ -0.11
CLN3-224ENST00000566816 KCPQ6ZWJ8 1503 aa14.38□□□□□ -0.11
CLN3-224ENST00000566816 CT47B1P0C2W7 299 aaPredicted RBP14.38□□□□□ -0.11
CLN3-224ENST00000566816 ZNF831Q5JPB2 1677 aa14.38□□□□□ -0.11
CLN3-224ENST00000566816 FANCIQ9NVI1 1328 aa14.38□□□□□ -0.11
CLN3-224ENST00000566816 PAPPAQ13219 1627 aa14.37□□□□□ -0.11
CLN3-224ENST00000566816 SENP3-EIF4A1A0A087X0R7 540 aa14.37□□□□□ -0.11
CLN3-224ENST00000566816 CYP19A1P11511 503 aaPredicted RBP14.37□□□□□ -0.11
CLN3-224ENST00000566816 ITPK1Q13572 414 aa14.37□□□□□ -0.11
CLN3-224ENST00000566816 ZNF428Q96B54 188 aa14.37□□□□□ -0.11
CLN3-224ENST00000566816 ERBB4Q15303 1308 aa14.37□□□□□ -0.11
CLN3-224ENST00000566816 CNTNAP4Q9C0A0 1308 aa14.37□□□□□ -0.11
CLN3-224ENST00000566816 NBPF14Q5TI25 921 aa14.36□□□□□ -0.11
CLN3-224ENST00000566816 DUSP27Q5VZP5 1158 aa14.36□□□□□ -0.11
CLN3-224ENST00000566816 DNAJC10Q8IXB1 793 aa14.36□□□□□ -0.11
CLN3-224ENST00000566816 LY75O60449 1722 aa14.35□□□□□ -0.11
CLN3-224ENST00000566816 C8orf58Q8NAV2 365 aa14.35□□□□□ -0.11
CLN3-224ENST00000566816 TSR2Q969E8 191 aaKnown RBP14.35□□□□□ -0.11
CLN3-224ENST00000566816 CDCA7LQ96GN5 454 aa14.35□□□□□ -0.11
CLN3-224ENST00000566816 USP16Q9Y5T5 823 aa14.35□□□□□ -0.11
CLN3-224ENST00000566816 VIRMAQ69YN4 1812 aaKnown RBP14.35□□□□□ -0.11
CLN3-224ENST00000566816 CICQ96RK0 1608 aaPredicted RBP14.34□□□□□ -0.11
CLN3-224ENST00000566816 LINC00116Q8NCU8 138 aa14.34□□□□□ -0.11
CLN3-224ENST00000566816 FLAD1Q8NFF5 587 aa14.34□□□□□ -0.11
CLN3-224ENST00000566816 AKT1S1Q96B36 256 aa14.34□□□□□ -0.11
CLN3-224ENST00000566816 KDM3BQ7LBC6 1761 aa14.34□□□□□ -0.11
CLN3-224ENST00000566816 UBR2Q8IWV8 1755 aa14.34□□□□□ -0.11
CLN3-224ENST00000566816 VAMP4O75379 141 aa14.33□□□□□ -0.12
CLN3-224ENST00000566816 RPS6KA4O75676 772 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms