RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 ZCRB1Q8TBF4 217 aaKnown RBP13.37□□□□□ -0.27
SMPD3-206ENST00000566009 TSKSQ9UJT2 592 aa13.37□□□□□ -0.27
SMPD3-206ENST00000566009 TMF1P82094 1093 aa13.36□□□□□ -0.27
SMPD3-206ENST00000566009 HABP4Q5JVS0 413 aaKnown RBP13.36□□□□□ -0.27
SMPD3-206ENST00000566009 TTC21BQ7Z4L5 1316 aa13.36□□□□□ -0.27
SMPD3-206ENST00000566009 ITGBL1O95965 494 aaPredicted RBP13.35□□□□□ -0.27
SMPD3-206ENST00000566009 GNPATO15228 680 aa13.34□□□□□ -0.27
SMPD3-206ENST00000566009 LINC00116Q8NCU8 138 aa13.34□□□□□ -0.27
SMPD3-206ENST00000566009 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
SMPD3-206ENST00000566009 PARP3Q9Y6F1 533 aa13.34□□□□□ -0.27
SMPD3-206ENST00000566009 CHRNA5P30532 468 aa13.33□□□□□ -0.28
SMPD3-206ENST00000566009 MPRIPQ6WCQ1 1025 aa13.33□□□□□ -0.28
SMPD3-206ENST00000566009 KDM2AQ9Y2K7 1162 aa13.33□□□□□ -0.28
SMPD3-206ENST00000566009 LDHDQ86WU2 507 aa13.32□□□□□ -0.28
SMPD3-206ENST00000566009 SMARCC1Q92922 1105 aaPredicted RBP13.32□□□□□ -0.28
SMPD3-206ENST00000566009 MPHOSPH9Q99550 1183 aa13.32□□□□□ -0.28
SMPD3-206ENST00000566009 C4AP0C0L4 1744 aa13.3□□□□□ -0.28
SMPD3-206ENST00000566009 ABT1Q9ULW3 272 aaKnown RBP13.3□□□□□ -0.28
SMPD3-206ENST00000566009 TTC21AQ8NDW8 1320 aa13.3□□□□□ -0.28
SMPD3-206ENST00000566009 CASP8AP2Q9UKL3 1982 aa13.29□□□□□ -0.28
SMPD3-206ENST00000566009 TRAPPC3LQ5T215 181 aa13.29□□□□□ -0.28
SMPD3-206ENST00000566009 GPR101Q96P66 508 aaPredicted RBP13.29□□□□□ -0.28
SMPD3-206ENST00000566009 ZNF692Q9BU19 519 aaPredicted RBP13.29□□□□□ -0.28
SMPD3-206ENST00000566009 TIAM2Q8IVF5 1701 aa13.28□□□□□ -0.28
SMPD3-206ENST00000566009 GYS1P13807 737 aa13.28□□□□□ -0.28
SMPD3-206ENST00000566009 LTV1Q96GA3 475 aaPredicted RBP13.28□□□□□ -0.28
SMPD3-206ENST00000566009 CAPNS2Q96L46 248 aa13.28□□□□□ -0.28
SMPD3-206ENST00000566009 LOC102724428A0A0B4J2F2 783 aa13.27□□□□□ -0.29
SMPD3-206ENST00000566009 DDNO94850 711 aaPredicted RBP13.27□□□□□ -0.29
SMPD3-206ENST00000566009 SIK1P57059 783 aa13.27□□□□□ -0.29
SMPD3-206ENST00000566009 CCDC88AQ3V6T2 1871 aa13.27□□□□□ -0.29
SMPD3-206ENST00000566009 NFKBIEO00221 500 aa13.26□□□□□ -0.29
SMPD3-206ENST00000566009 ECE1P42892 770 aa13.26□□□□□ -0.29
SMPD3-206ENST00000566009 FXR1P51114 621 aaKnown RBP eCLIP13.26□□□□□ -0.29
SMPD3-206ENST00000566009 GRM1Q13255 1194 aa13.26□□□□□ -0.29
SMPD3-206ENST00000566009 ITPK1Q13572 414 aa13.26□□□□□ -0.29
SMPD3-206ENST00000566009 NBPF15Q8N660 670 aa13.26□□□□□ -0.29
SMPD3-206ENST00000566009 DCAF11Q8TEB1 546 aa13.26□□□□□ -0.29
SMPD3-206ENST00000566009 ARHGEF1Q92888 912 aaKnown RBP13.26□□□□□ -0.29
SMPD3-206ENST00000566009 CA12O43570 354 aa13.25□□□□□ -0.29
SMPD3-206ENST00000566009 ERFEQ4G0M1 354 aa13.25□□□□□ -0.29
SMPD3-206ENST00000566009 CYP4F22Q6NT55 531 aa13.25□□□□□ -0.29
SMPD3-206ENST00000566009 PAXIP1Q6ZW49 1069 aaPredicted RBP13.25□□□□□ -0.29
SMPD3-206ENST00000566009 TAF1DQ9H5J8 278 aaPredicted RBP13.25□□□□□ -0.29
SMPD3-206ENST00000566009 RTCBQ9Y3I0 505 aaKnown RBP13.25□□□□□ -0.29
SMPD3-206ENST00000566009 THSD7BQ9C0I4 1608 aa13.24□□□□□ -0.29
SMPD3-206ENST00000566009 MEGF6O75095 1541 aa13.24□□□□□ -0.29
SMPD3-206ENST00000566009 IQCA1LA6NCM1 817 aa13.24□□□□□ -0.29
SMPD3-206ENST00000566009 NBPF1Q3BBV0 1214 aa13.24□□□□□ -0.29
SMPD3-206ENST00000566009 LTBP1Q14766 1721 aa13.24□□□□□ -0.29
SMPD3-206ENST00000566009 ATP6V1AP38606 617 aa13.23□□□□□ -0.29
SMPD3-206ENST00000566009 CNTROBQ8N137 903 aa13.23□□□□□ -0.29
SMPD3-206ENST00000566009 PIGBQ92521 554 aa13.23□□□□□ -0.29
SMPD3-206ENST00000566009 IP6K1Q92551 441 aa13.23□□□□□ -0.29
SMPD3-206ENST00000566009 CLEC11AQ9Y240 323 aa13.23□□□□□ -0.29
SMPD3-206ENST00000566009 LTN1O94822 1766 aa13.22□□□□□ -0.29
SMPD3-206ENST00000566009 RFC4P35249 363 aa13.22□□□□□ -0.29
SMPD3-206ENST00000566009 MAP2K2P36507 400 aa13.22□□□□□ -0.29
SMPD3-206ENST00000566009 EAPPQ56P03 285 aaPredicted RBP13.22□□□□□ -0.29
SMPD3-206ENST00000566009 MAP2P11137 1827 aaKnown RBP13.22□□□□□ -0.29
SMPD3-206ENST00000566009 USP31Q70CQ4 1352 aa13.21□□□□□ -0.29
SMPD3-206ENST00000566009 AOC2O75106 756 aa13.21□□□□□ -0.29
SMPD3-206ENST00000566009 DDR1Q08345 913 aa13.21□□□□□ -0.29
SMPD3-206ENST00000566009 SLC17A8Q8NDX2 589 aa13.21□□□□□ -0.29
SMPD3-206ENST00000566009 ADRA2BP18089 450 aa13.2□□□□□ -0.3
SMPD3-206ENST00000566009 MAP1SQ66K74 1059 aaPredicted RBP13.2□□□□□ -0.3
SMPD3-206ENST00000566009 STAC3Q96MF2 364 aa13.2□□□□□ -0.3
SMPD3-206ENST00000566009 FAM208AQ9UK61 1670 aaKnown RBP13.19□□□□□ -0.3
SMPD3-206ENST00000566009 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.19□□□□□ -0.3
SMPD3-206ENST00000566009 TTLL6Q8N841 843 aa13.19□□□□□ -0.3
SMPD3-206ENST00000566009 CGNL1Q0VF96 1302 aa13.18□□□□□ -0.3
SMPD3-206ENST00000566009 L3MBTL3Q96JM7 780 aaPredicted RBP13.18□□□□□ -0.3
SMPD3-206ENST00000566009 DDX21Q9NR30 783 aaKnown RBP eCLIP13.18□□□□□ -0.3
SMPD3-206ENST00000566009 CENPJQ9HC77 1338 aaPredicted RBP13.17□□□□□ -0.3
SMPD3-206ENST00000566009 FKBP8Q14318 412 aa13.17□□□□□ -0.3
SMPD3-206ENST00000566009 NME9Q86XW9 330 aa13.17□□□□□ -0.3
SMPD3-206ENST00000566009 KTN1Q86UP2 1357 aaKnown RBP13.17□□□□□ -0.3
SMPD3-206ENST00000566009 PITPNM2Q9BZ72 1349 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 PCDH11XQ9BZA7 1347 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 PCDH11YQ9BZA8 1340 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 ITGB4P16144 1822 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 RPS6KA4O75676 772 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 RAPGEF4Q8WZA2 1011 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 ASAP1Q9ULH1 1129 aa13.16□□□□□ -0.3
SMPD3-206ENST00000566009 CYP27B1O15528 508 aa13.15□□□□□ -0.3
SMPD3-206ENST00000566009 BRPF1P55201 1214 aaPredicted RBP13.15□□□□□ -0.3
SMPD3-206ENST00000566009 RC3H1Q5TC82 1133 aaKnown RBP13.15□□□□□ -0.3
SMPD3-206ENST00000566009 SCN4AP35499 1836 aa13.15□□□□□ -0.3
SMPD3-206ENST00000566009 DICER1Q9UPY3 1922 aaKnown RBP13.15□□□□□ -0.3
SMPD3-206ENST00000566009 POLRMTO00411 1230 aaKnown RBP13.14□□□□□ -0.31
SMPD3-206ENST00000566009 TATP17735 454 aaPredicted RBP13.14□□□□□ -0.31
SMPD3-206ENST00000566009 EPHX2P34913 555 aa13.14□□□□□ -0.31
SMPD3-206ENST00000566009 FMR1Q06787 632 aaKnown RBP eCLIP13.14□□□□□ -0.31
SMPD3-206ENST00000566009 NBPF6Q5VWK0 638 aa13.14□□□□□ -0.31
SMPD3-206ENST00000566009 NBPF4Q96M43 638 aa13.14□□□□□ -0.31
SMPD3-206ENST00000566009 SRP68Q9UHB9 627 aaKnown RBP13.14□□□□□ -0.31
SMPD3-206ENST00000566009 HACL1Q9UJ83 578 aa13.14□□□□□ -0.31
SMPD3-206ENST00000566009 CD163L1Q9NR16 1453 aa13.14□□□□□ -0.31
SMPD3-206ENST00000566009 RGPD2P0DJD1 1756 aa13.13□□□□□ -0.31
SMPD3-206ENST00000566009 ADAMTSL1Q8N6G6 1762 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms