RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 ATP6V1AP38606 617 aa24.76■■□□□ 1.55
CLN3-214ENST00000565140 MTHFSDQ2M296 383 aaKnown RBP24.76■■□□□ 1.55
CLN3-214ENST00000565140 AKAP4Q5JQC9 854 aa24.76■■□□□ 1.55
CLN3-214ENST00000565140 AMIGO3Q86WK7 504 aa24.76■■□□□ 1.55
CLN3-214ENST00000565140 NFATC2IPQ8NCF5 419 aa24.76■■□□□ 1.55
CLN3-214ENST00000565140 MSH5O43196 834 aa24.75■■□□□ 1.55
CLN3-214ENST00000565140 HMGB2P26583 209 aaKnown RBP24.75■■□□□ 1.55
CLN3-214ENST00000565140 SMIM5Q71RC9 77 aa24.75■■□□□ 1.55
CLN3-214ENST00000565140 SLC4A9Q96Q91 983 aa24.75■■□□□ 1.55
CLN3-214ENST00000565140 LGR6Q9HBX8 967 aa24.75■■□□□ 1.55
CLN3-214ENST00000565140 ZNF831Q5JPB2 1677 aa24.75■■□□□ 1.55
CLN3-214ENST00000565140 ARXQ96QS3 562 aa24.74■■□□□ 1.55
CLN3-214ENST00000565140 AK7Q96M32 723 aa24.73■■□□□ 1.55
CLN3-214ENST00000565140 FHDC1Q9C0D6 1143 aaPredicted RBP24.73■■□□□ 1.55
CLN3-214ENST00000565140 CFAP53Q96M91 514 aa24.72■■□□□ 1.55
CLN3-214ENST00000565140 RBM42Q9BTD8 480 aaKnown RBP24.72■■□□□ 1.55
CLN3-214ENST00000565140 ADAMTS7Q9UKP4 1686 aa24.72■■□□□ 1.55
CLN3-214ENST00000565140 SYT17Q9BSW7 474 aa24.71■■□□□ 1.55
CLN3-214ENST00000565140 COL5A3P25940 1745 aaPredicted RBP24.71■■□□□ 1.55
CLN3-214ENST00000565140 RNMTO43148 476 aaKnown RBP24.7■■□□□ 1.54
CLN3-214ENST00000565140 FLAD1Q8NFF5 587 aa24.7■■□□□ 1.54
CLN3-214ENST00000565140 MYH14Q7Z406 1995 aaKnown RBP24.69■■□□□ 1.54
CLN3-214ENST00000565140 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.68■■□□□ 1.54
CLN3-214ENST00000565140 PHF14O94880 888 aa24.68■■□□□ 1.54
CLN3-214ENST00000565140 POLD1P28340 1107 aa24.68■■□□□ 1.54
CLN3-214ENST00000565140 MSL1Q68DK7 614 aa24.68■■□□□ 1.54
CLN3-214ENST00000565140 SLC52A2Q9HAB3 445 aa24.68■■□□□ 1.54
CLN3-214ENST00000565140 PTCD1O75127 700 aaKnown RBP24.67■■□□□ 1.54
CLN3-214ENST00000565140 MRC1P22897 1456 aa24.66■■□□□ 1.54
CLN3-214ENST00000565140 GNPATO15228 680 aa24.66■■□□□ 1.54
CLN3-214ENST00000565140 PHACTR3Q96KR7 559 aa24.66■■□□□ 1.54
CLN3-214ENST00000565140 RSPH6AQ9H0K4 717 aa24.66■■□□□ 1.54
CLN3-214ENST00000565140 TJP1Q07157 1748 aa24.65■■□□□ 1.54
CLN3-214ENST00000565140 NUDCQ9Y266 331 aa24.65■■□□□ 1.54
CLN3-214ENST00000565140 SSFA2P28290 1259 aa24.64■■□□□ 1.54
CLN3-214ENST00000565140 PRKAR2BP31323 418 aa24.64■■□□□ 1.54
CLN3-214ENST00000565140 DDX10Q13206 875 aaKnown RBP24.64■■□□□ 1.54
CLN3-214ENST00000565140 U2AF1L5P0DN76 240 aaPredicted RBP24.63■■□□□ 1.53
CLN3-214ENST00000565140 U2AF1Q01081 240 aaKnown RBP eCLIP24.63■■□□□ 1.53
CLN3-214ENST00000565140 MAP3K5Q99683 1374 aa24.63■■□□□ 1.53
CLN3-214ENST00000565140 UTRNP46939 3433 aa24.63■■□□□ 1.53
CLN3-214ENST00000565140 SLC39A6Q13433 755 aa24.62■■□□□ 1.53
CLN3-214ENST00000565140 RC3H1Q5TC82 1133 aaKnown RBP24.62■■□□□ 1.53
CLN3-214ENST00000565140 GAS2L2Q8NHY3 880 aa24.62■■□□□ 1.53
CLN3-214ENST00000565140 GNAT3A8MTJ3 354 aa24.61■■□□□ 1.53
CLN3-214ENST00000565140 KLHL34Q8N239 644 aa24.61■■□□□ 1.53
CLN3-214ENST00000565140 IL17REQ8NFR9 667 aa24.61■■□□□ 1.53
CLN3-214ENST00000565140 SIPA1L3O60292 1781 aaPredicted RBP24.61■■□□□ 1.53
CLN3-214ENST00000565140 CICQ96RK0 1608 aaPredicted RBP24.61■■□□□ 1.53
CLN3-214ENST00000565140 CNTNAP4Q9C0A0 1308 aa24.6■■□□□ 1.53
CLN3-214ENST00000565140 UBR2Q8IWV8 1755 aa24.58■■□□□ 1.53
CLN3-214ENST00000565140 KCPQ6ZWJ8 1503 aa24.58■■□□□ 1.53
CLN3-214ENST00000565140 DCAF8L1A6NGE4 600 aa24.58■■□□□ 1.53
CLN3-214ENST00000565140 FCHSD2O94868 740 aa24.58■■□□□ 1.53
CLN3-214ENST00000565140 RTCBQ9Y3I0 505 aaKnown RBP24.58■■□□□ 1.53
CLN3-214ENST00000565140 GOLGB1Q14789 3259 aaKnown RBP24.57■■□□□ 1.52
CLN3-214ENST00000565140 C4AP0C0L4 1744 aa24.56■■□□□ 1.52
CLN3-214ENST00000565140 RPS6KA4O75676 772 aa24.56■■□□□ 1.52
CLN3-214ENST00000565140 CRKLP46109 303 aaKnown RBP24.56■■□□□ 1.52
CLN3-214ENST00000565140 TRAPPC3LQ5T215 181 aa24.56■■□□□ 1.52
CLN3-214ENST00000565140 NLGN2Q8NFZ4 835 aa24.56■■□□□ 1.52
CLN3-214ENST00000565140 DNAJC10Q8IXB1 793 aa24.55■■□□□ 1.52
CLN3-214ENST00000565140 ARHGEF1Q92888 912 aaKnown RBP24.55■■□□□ 1.52
CLN3-214ENST00000565140 DLG5Q8TDM6 1919 aa24.53■■□□□ 1.52
CLN3-214ENST00000565140 TEFQ10587 303 aa24.53■■□□□ 1.52
CLN3-214ENST00000565140 INTS5Q6P9B9 1019 aaKnown RBP24.53■■□□□ 1.52
CLN3-214ENST00000565140 CEMIPQ8WUJ3 1361 aa24.53■■□□□ 1.52
CLN3-214ENST00000565140 ADRA2BP18089 450 aa24.52■■□□□ 1.52
CLN3-214ENST00000565140 RALBP1Q15311 655 aa24.52■■□□□ 1.52
CLN3-214ENST00000565140 CYP19A1P11511 503 aaPredicted RBP24.5■■□□□ 1.51
CLN3-214ENST00000565140 RFC4P35249 363 aa24.49■■□□□ 1.51
CLN3-214ENST00000565140 CHD4Q14839 1912 aa24.49■■□□□ 1.51
CLN3-214ENST00000565140 GYS1P13807 737 aa24.48■■□□□ 1.51
CLN3-214ENST00000565140 ZNF790Q6PG37 636 aa24.48■■□□□ 1.51
CLN3-214ENST00000565140 MCM10Q7L590 875 aa24.48■■□□□ 1.51
CLN3-214ENST00000565140 TTC5Q8N0Z6 440 aa24.48■■□□□ 1.51
CLN3-214ENST00000565140 VSIG10Q8N0Z9 540 aa24.48■■□□□ 1.51
CLN3-214ENST00000565140 CCDC87Q9NVE4 849 aa24.48■■□□□ 1.51
CLN3-214ENST00000565140 ZNF496Q96IT1 587 aaPredicted RBP24.47■■□□□ 1.51
CLN3-214ENST00000565140 PLEKHF1Q96S99 279 aa24.47■■□□□ 1.51
CLN3-214ENST00000565140 CD2APQ9Y5K6 639 aa24.47■■□□□ 1.51
CLN3-214ENST00000565140 MMP10P09238 476 aa24.46■■□□□ 1.51
CLN3-214ENST00000565140 DCTN1Q14203 1278 aa24.46■■□□□ 1.51
CLN3-214ENST00000565140 SRP68Q9UHB9 627 aaKnown RBP24.46■■□□□ 1.51
CLN3-214ENST00000565140 KCNQ3O43525 872 aa24.45■■□□□ 1.5
CLN3-214ENST00000565140 YY1P25490 414 aa24.45■■□□□ 1.5
CLN3-214ENST00000565140 GPR162Q16538 588 aa24.45■■□□□ 1.5
CLN3-214ENST00000565140 NLGN1Q8N2Q7 840 aa24.45■■□□□ 1.5
CLN3-214ENST00000565140 RTF1Q92541 710 aaKnown RBP24.45■■□□□ 1.5
CLN3-214ENST00000565140 BTBD11A6QL63 1104 aa24.44■■□□□ 1.5
CLN3-214ENST00000565140 ZEB1P37275 1124 aaPredicted RBP24.44■■□□□ 1.5
CLN3-214ENST00000565140 SOS1Q07889 1333 aaPredicted RBP24.43■■□□□ 1.5
CLN3-214ENST00000565140 HTATSF1O43719 755 aaKnown RBP24.43■■□□□ 1.5
CLN3-214ENST00000565140 PELP1Q8IZL8 1130 aaKnown RBP24.43■■□□□ 1.5
CLN3-214ENST00000565140 ZBTB1Q9Y2K1 713 aa24.43■■□□□ 1.5
CLN3-214ENST00000565140 HEG1Q9ULI3 1381 aa24.42■■□□□ 1.5
CLN3-214ENST00000565140 KIF13BQ9NQT8 1826 aa24.42■■□□□ 1.5
CLN3-214ENST00000565140 MYBBP1AQ9BQG0 1328 aaKnown RBP24.42■■□□□ 1.5
CLN3-214ENST00000565140 USP42Q9H9J4 1324 aaKnown RBP24.42■■□□□ 1.5
CLN3-214ENST00000565140 YBX3P16989 372 aaKnown RBP eCLIP24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms