RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ZNF530Q6P9A1 599 aaPredicted RBP23.45■■□□□ 1.34
VPS9D1-203ENST00000563798 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.44■■□□□ 1.34
VPS9D1-203ENST00000563798 ATP6V1AP38606 617 aa23.44■■□□□ 1.34
VPS9D1-203ENST00000563798 SULT6B1Q6IMI4 303 aa23.44■■□□□ 1.34
VPS9D1-203ENST00000563798 NPC1L1Q9UHC9 1359 aa23.43■■□□□ 1.34
VPS9D1-203ENST00000563798 MSL1Q68DK7 614 aa23.43■■□□□ 1.34
VPS9D1-203ENST00000563798 NLGN2Q8NFZ4 835 aa23.43■■□□□ 1.34
VPS9D1-203ENST00000563798 MTHFSP49914 203 aa23.42■■□□□ 1.34
VPS9D1-203ENST00000563798 GPR162Q16538 588 aa23.42■■□□□ 1.34
VPS9D1-203ENST00000563798 KLHL34Q8N239 644 aa23.42■■□□□ 1.34
VPS9D1-203ENST00000563798 CD2APQ9Y5K6 639 aa23.42■■□□□ 1.34
VPS9D1-203ENST00000563798 SLC4A9Q96Q91 983 aa23.41■■□□□ 1.34
VPS9D1-203ENST00000563798 CHD4Q14839 1912 aa23.41■■□□□ 1.34
VPS9D1-203ENST00000563798 CABP4P57796 275 aa23.4■■□□□ 1.34
VPS9D1-203ENST00000563798 C1orf141Q5JVX7 400 aa23.4■■□□□ 1.34
VPS9D1-203ENST00000563798 RC3H1Q5TC82 1133 aaKnown RBP23.39■■□□□ 1.33
VPS9D1-203ENST00000563798 GNPATO15228 680 aa23.38■■□□□ 1.33
VPS9D1-203ENST00000563798 PHF14O94880 888 aa23.38■■□□□ 1.33
VPS9D1-203ENST00000563798 SMIM5Q71RC9 77 aa23.37■■□□□ 1.33
VPS9D1-203ENST00000563798 ZNF784Q8NCA9 323 aaPredicted RBP23.37■■□□□ 1.33
VPS9D1-203ENST00000563798 CNTNAP4Q9C0A0 1308 aa23.35■■□□□ 1.33
VPS9D1-203ENST00000563798 AKAP4Q5JQC9 854 aa23.35■■□□□ 1.33
VPS9D1-203ENST00000563798 CC2D1BQ5T0F9 858 aaKnown RBP23.35■■□□□ 1.33
VPS9D1-203ENST00000563798 COL5A3P25940 1745 aaPredicted RBP23.34■■□□□ 1.33
VPS9D1-203ENST00000563798 GRIN3BO60391 1043 aa23.34■■□□□ 1.33
VPS9D1-203ENST00000563798 ADRA2BP18089 450 aa23.34■■□□□ 1.33
VPS9D1-203ENST00000563798 NFATC2IPQ8NCF5 419 aa23.34■■□□□ 1.33
VPS9D1-203ENST00000563798 RBM42Q9BTD8 480 aaKnown RBP23.34■■□□□ 1.33
VPS9D1-203ENST00000563798 DIAPH1O60610 1272 aaKnown RBP23.33■■□□□ 1.33
VPS9D1-203ENST00000563798 YBX3P16989 372 aaKnown RBP eCLIP23.33■■□□□ 1.33
VPS9D1-203ENST00000563798 RTCBQ9Y3I0 505 aaKnown RBP23.33■■□□□ 1.33
VPS9D1-203ENST00000563798 SCN11AQ9UI33 1791 aa23.32■■□□□ 1.32
VPS9D1-203ENST00000563798 RPS6KA4O75676 772 aa23.32■■□□□ 1.32
VPS9D1-203ENST00000563798 TRAPPC3LQ5T215 181 aa23.32■■□□□ 1.32
VPS9D1-203ENST00000563798 CICQ96RK0 1608 aaPredicted RBP23.32■■□□□ 1.32
VPS9D1-203ENST00000563798 GOLGB1Q14789 3259 aaKnown RBP23.31■■□□□ 1.32
VPS9D1-203ENST00000563798 PELP1Q8IZL8 1130 aaKnown RBP23.31■■□□□ 1.32
VPS9D1-203ENST00000563798 COL3A1P02461 1466 aaPredicted RBP23.3■■□□□ 1.32
VPS9D1-203ENST00000563798 MRC1P22897 1456 aa23.3■■□□□ 1.32
VPS9D1-203ENST00000563798 HMOX1P09601 288 aa23.29■■□□□ 1.32
VPS9D1-203ENST00000563798 NLGN1Q8N2Q7 840 aa23.29■■□□□ 1.32
VPS9D1-203ENST00000563798 ARHGEF1Q92888 912 aaKnown RBP23.29■■□□□ 1.32
VPS9D1-203ENST00000563798 SLC52A2Q9HAB3 445 aa23.29■■□□□ 1.32
VPS9D1-203ENST00000563798 ADAMTS7Q9UKP4 1686 aa23.28■■□□□ 1.32
VPS9D1-203ENST00000563798 PTCD1O75127 700 aaKnown RBP23.27■■□□□ 1.32
VPS9D1-203ENST00000563798 MTHFSDQ2M296 383 aaKnown RBP23.27■■□□□ 1.32
VPS9D1-203ENST00000563798 LGR6Q9HBX8 967 aa23.27■■□□□ 1.32
VPS9D1-203ENST00000563798 RNMTO43148 476 aaKnown RBP23.26■■□□□ 1.31
VPS9D1-203ENST00000563798 MYH14Q7Z406 1995 aaKnown RBP23.25■■□□□ 1.31
VPS9D1-203ENST00000563798 MMP10P09238 476 aa23.25■■□□□ 1.31
VPS9D1-203ENST00000563798 TJP1Q07157 1748 aa23.25■■□□□ 1.31
VPS9D1-203ENST00000563798 GYS1P13807 737 aa23.24■■□□□ 1.31
VPS9D1-203ENST00000563798 CRKLP46109 303 aaKnown RBP23.24■■□□□ 1.31
VPS9D1-203ENST00000563798 RFC4P35249 363 aa23.23■■□□□ 1.31
VPS9D1-203ENST00000563798 KIF13BQ9NQT8 1826 aa23.22■■□□□ 1.31
VPS9D1-203ENST00000563798 INTS5Q6P9B9 1019 aaKnown RBP23.21■■□□□ 1.31
VPS9D1-203ENST00000563798 C4AP0C0L4 1744 aa23.2■■□□□ 1.3
VPS9D1-203ENST00000563798 C10orf71Q711Q0 1435 aa23.19■■□□□ 1.3
VPS9D1-203ENST00000563798 TGFB2P61812 414 aa23.19■■□□□ 1.3
VPS9D1-203ENST00000563798 VSIG10Q8N0Z9 540 aa23.19■■□□□ 1.3
VPS9D1-203ENST00000563798 KCPQ6ZWJ8 1503 aa23.18■■□□□ 1.3
VPS9D1-203ENST00000563798 DNAJC10Q8IXB1 793 aa23.18■■□□□ 1.3
VPS9D1-203ENST00000563798 VIRMAQ69YN4 1812 aaKnown RBP23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 USP42Q9H9J4 1324 aaKnown RBP23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 U2SURPO15042 1029 aaKnown RBP23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 CYP19A1P11511 503 aaPredicted RBP23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 GAS2L2Q8NHY3 880 aa23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 CCDC87Q9NVE4 849 aa23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 PXDNLA1KZ92 1463 aa23.17■■□□□ 1.3
VPS9D1-203ENST00000563798 KIAA1551Q9HCM1 1747 aa23.16■■□□□ 1.3
VPS9D1-203ENST00000563798 SLC39A6Q13433 755 aa23.16■■□□□ 1.3
VPS9D1-203ENST00000563798 CFAP53Q96M91 514 aa23.15■■□□□ 1.3
VPS9D1-203ENST00000563798 PARP3Q9Y6F1 533 aa23.15■■□□□ 1.3
VPS9D1-203ENST00000563798 SOS1Q07889 1333 aaPredicted RBP23.14■■□□□ 1.3
VPS9D1-203ENST00000563798 GNAT3A8MTJ3 354 aa23.14■■□□□ 1.29
VPS9D1-203ENST00000563798 IL17REQ8NFR9 667 aa23.14■■□□□ 1.29
VPS9D1-203ENST00000563798 UBR2Q8IWV8 1755 aa23.14■■□□□ 1.29
VPS9D1-203ENST00000563798 ADCY9O60503 1353 aa23.14■■□□□ 1.29
VPS9D1-203ENST00000563798 CNGB1Q14028 1251 aaPredicted RBP23.13■■□□□ 1.29
VPS9D1-203ENST00000563798 SRP68Q9UHB9 627 aaKnown RBP23.13■■□□□ 1.29
VPS9D1-203ENST00000563798 PPP2R1AP30153 589 aa23.12■■□□□ 1.29
VPS9D1-203ENST00000563798 C1QTNF8P60827 252 aa23.12■■□□□ 1.29
VPS9D1-203ENST00000563798 FKBP8Q14318 412 aa23.12■■□□□ 1.29
VPS9D1-203ENST00000563798 RSPH6AQ9H0K4 717 aa23.12■■□□□ 1.29
VPS9D1-203ENST00000563798 CEMIPQ8WUJ3 1361 aa23.12■■□□□ 1.29
VPS9D1-203ENST00000563798 TM4SF1P30408 202 aa23.11■■□□□ 1.29
VPS9D1-203ENST00000563798 NUDCQ9Y266 331 aa23.1■■□□□ 1.29
VPS9D1-203ENST00000563798 ATP10DQ9P241 1426 aa23.09■■□□□ 1.29
VPS9D1-203ENST00000563798 DDR1Q08345 913 aa23.09■■□□□ 1.29
VPS9D1-203ENST00000563798 TEFQ10587 303 aa23.09■■□□□ 1.29
VPS9D1-203ENST00000563798 PHACTR3Q96KR7 559 aa23.09■■□□□ 1.29
VPS9D1-203ENST00000563798 SIPA1L3O60292 1781 aaPredicted RBP23.09■■□□□ 1.29
VPS9D1-203ENST00000563798 A0A0G2JLW4 131 aa23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 GIGYF1O75420 1035 aaPredicted RBP23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 PRKAR2BP31323 418 aa23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 ZNF790Q6PG37 636 aa23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 TTC5Q8N0Z6 440 aa23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 NARFQ9UHQ1 456 aa23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 ZBTB1Q9Y2K1 713 aa23.08■■□□□ 1.29
VPS9D1-203ENST00000563798 N4BP2Q86UW6 1770 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms