RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 KIF24Q5T7B8 1368 aa14.69□□□□□ -0.06
SF3B3-204ENST00000563739 TJP1Q07157 1748 aa14.69□□□□□ -0.06
SF3B3-204ENST00000563739 SBF1O95248 1867 aa14.68□□□□□ -0.06
SF3B3-204ENST00000563739 PRELPP51888 382 aa14.68□□□□□ -0.06
SF3B3-204ENST00000563739 EMILIN1Q9Y6C2 1016 aa14.68□□□□□ -0.06
SF3B3-204ENST00000563739 LOC102724428A0A0B4J2F2 783 aa14.67□□□□□ -0.06
SF3B3-204ENST00000563739 SIK1P57059 783 aa14.67□□□□□ -0.06
SF3B3-204ENST00000563739 PCDH10Q9P2E7 1040 aa14.67□□□□□ -0.06
SF3B3-204ENST00000563739 ASAP1Q9ULH1 1129 aa14.67□□□□□ -0.06
SF3B3-204ENST00000563739 TONSLQ96HA7 1378 aa14.66□□□□□ -0.06
SF3B3-204ENST00000563739 NMRK2Q9NPI5 230 aa14.66□□□□□ -0.06
SF3B3-204ENST00000563739 SMARCC1Q92922 1105 aaPredicted RBP14.65□□□□□ -0.06
SF3B3-204ENST00000563739 CARD14Q9BXL6 1004 aa14.65□□□□□ -0.06
SF3B3-204ENST00000563739 TNRC6CQ9HCJ0 1690 aaKnown RBP14.65□□□□□ -0.06
SF3B3-204ENST00000563739 MMP10P09238 476 aa14.64□□□□□ -0.07
SF3B3-204ENST00000563739 HTRA3P83110 453 aa14.64□□□□□ -0.07
SF3B3-204ENST00000563739 GNPATO15228 680 aa14.63□□□□□ -0.07
SF3B3-204ENST00000563739 KCNA3P22001 575 aa14.63□□□□□ -0.07
SF3B3-204ENST00000563739 APLP1P51693 650 aa14.63□□□□□ -0.07
SF3B3-204ENST00000563739 ATG3Q9NT62 314 aa14.63□□□□□ -0.07
SF3B3-204ENST00000563739 KDM6AO15550 1401 aaPredicted RBP14.63□□□□□ -0.07
SF3B3-204ENST00000563739 KCPQ6ZWJ8 1503 aa14.62□□□□□ -0.07
SF3B3-204ENST00000563739 DLEC1Q9Y238 1755 aa14.62□□□□□ -0.07
SF3B3-204ENST00000563739 A0A0G2JLW4 131 aa14.61□□□□□ -0.07
SF3B3-204ENST00000563739 TOMM70O94826 608 aa14.61□□□□□ -0.07
SF3B3-204ENST00000563739 PHKG2P15735 406 aa14.61□□□□□ -0.07
SF3B3-204ENST00000563739 EYA1Q99502 592 aa14.61□□□□□ -0.07
SF3B3-204ENST00000563739 NRXN2Q9P2S2 1712 aa14.61□□□□□ -0.07
SF3B3-204ENST00000563739 AFDNP55196 1824 aaKnown RBP14.6□□□□□ -0.07
SF3B3-204ENST00000563739 DPEP1P16444 411 aa14.6□□□□□ -0.07
SF3B3-204ENST00000563739 JMYQ8N9B5 988 aa14.6□□□□□ -0.07
SF3B3-204ENST00000563739 TIAM2Q8IVF5 1701 aa14.59□□□□□ -0.07
SF3B3-204ENST00000563739 GYS1P13807 737 aa14.59□□□□□ -0.07
SF3B3-204ENST00000563739 ATP6V1AP38606 617 aa14.58□□□□□ -0.08
SF3B3-204ENST00000563739 TGFB2P61812 414 aa14.58□□□□□ -0.08
SF3B3-204ENST00000563739 BCS1LQ9Y276 419 aa14.58□□□□□ -0.08
SF3B3-204ENST00000563739 WASHC2AQ641Q2 1341 aa14.58□□□□□ -0.08
SF3B3-204ENST00000563739 RBM46Q8TBY0 533 aaKnown RBP14.57□□□□□ -0.08
SF3B3-204ENST00000563739 ARHGEF1Q92888 912 aaKnown RBP14.57□□□□□ -0.08
SF3B3-204ENST00000563739 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.57□□□□□ -0.089e-9■□□□□ 9.4
SF3B3-204ENST00000563739 TMOD3Q9NYL9 352 aa14.57□□□□□ -0.08
SF3B3-204ENST00000563739 CNTNAP4Q9C0A0 1308 aa14.57□□□□□ -0.08
SF3B3-204ENST00000563739 PLEKHG2Q9H7P9 1386 aa14.57□□□□□ -0.08
SF3B3-204ENST00000563739 SCN11AQ9UI33 1791 aa14.56□□□□□ -0.08
SF3B3-204ENST00000563739 DDR1Q08345 913 aa14.56□□□□□ -0.08
SF3B3-204ENST00000563739 TNS4Q8IZW8 715 aa14.56□□□□□ -0.08
SF3B3-204ENST00000563739 KLRG1Q96E93 195 aa14.56□□□□□ -0.08
SF3B3-204ENST00000563739 VIRMAQ69YN4 1812 aaKnown RBP14.56□□□□□ -0.08
SF3B3-204ENST00000563739 C9orf131Q5VYM1 1079 aa14.55□□□□□ -0.08
SF3B3-204ENST00000563739 DCAF5Q96JK2 942 aa14.55□□□□□ -0.08
SF3B3-204ENST00000563739 POLKQ9UBT6 870 aa14.55□□□□□ -0.08
SF3B3-204ENST00000563739 SPG7Q9UQ90 795 aa14.55□□□□□ -0.08
SF3B3-204ENST00000563739 EIF4A2Q14240 407 aaKnown RBP14.54□□□□□ -0.08
SF3B3-204ENST00000563739 CCDC88AQ3V6T2 1871 aa14.54□□□□□ -0.08
SF3B3-204ENST00000563739 HMGB2P26583 209 aaKnown RBP14.53□□□□□ -0.08
SF3B3-204ENST00000563739 TMF1P82094 1093 aa14.53□□□□□ -0.08
SF3B3-204ENST00000563739 RC3H1Q5TC82 1133 aaKnown RBP14.53□□□□□ -0.08
SF3B3-204ENST00000563739 ARHGAP27Q6ZUM4 889 aa14.53□□□□□ -0.08
SF3B3-204ENST00000563739 IFNL2Q8IZJ0 200 aa14.53□□□□□ -0.08
SF3B3-204ENST00000563739 SRP68Q9UHB9 627 aaKnown RBP14.53□□□□□ -0.08
SF3B3-204ENST00000563739 ANKRD31Q8N7Z5 1873 aa14.52□□□□□ -0.08
SF3B3-204ENST00000563739 RPS6KA4O75676 772 aa14.52□□□□□ -0.09
SF3B3-204ENST00000563739 FCHSD2O94868 740 aa14.52□□□□□ -0.09
SF3B3-204ENST00000563739 NLGN1Q8N2Q7 840 aa14.52□□□□□ -0.09
SF3B3-204ENST00000563739 RTCBQ9Y3I0 505 aaKnown RBP14.52□□□□□ -0.09
SF3B3-204ENST00000563739 COL11A2P13942 1736 aaPredicted RBP14.52□□□□□ -0.09
SF3B3-204ENST00000563739 USP42Q9H9J4 1324 aaKnown RBP14.51□□□□□ -0.09
SF3B3-204ENST00000563739 FKBP8Q14318 412 aa14.51□□□□□ -0.09
SF3B3-204ENST00000563739 TRAPPC3LQ5T215 181 aa14.51□□□□□ -0.09
SF3B3-204ENST00000563739 CCDC87Q9NVE4 849 aa14.5□□□□□ -0.09
SF3B3-204ENST00000563739 MRC1P22897 1456 aa14.5□□□□□ -0.09
SF3B3-204ENST00000563739 UBR2Q8IWV8 1755 aa14.5□□□□□ -0.09
SF3B3-204ENST00000563739 CHRNA5P30532 468 aa14.49□□□□□ -0.09
SF3B3-204ENST00000563739 FSTL1Q12841 308 aa14.49□□□□□ -0.09
SF3B3-204ENST00000563739 ERVV-2B6SEH9 535 aa14.48□□□□□ -0.09
SF3B3-204ENST00000563739 POLRMTO00411 1230 aaKnown RBP14.48□□□□□ -0.09
SF3B3-204ENST00000563739 PPM1GO15355 546 aaPredicted RBP14.48□□□□□ -0.09
SF3B3-204ENST00000563739 RASSF7Q02833 373 aa14.48□□□□□ -0.09
SF3B3-204ENST00000563739 RBM42Q9BTD8 480 aaKnown RBP14.48□□□□□ -0.09
SF3B3-204ENST00000563739 DICER1Q9UPY3 1922 aaKnown RBP14.48□□□□□ -0.09
SF3B3-204ENST00000563739 CARMIL3Q8ND23 1372 aa14.47□□□□□ -0.09
SF3B3-204ENST00000563739 SLC24A1O60721 1099 aa14.47□□□□□ -0.09
SF3B3-204ENST00000563739 CRKLP46109 303 aaKnown RBP14.47□□□□□ -0.09
SF3B3-204ENST00000563739 RRAGCQ9HB90 399 aa14.47□□□□□ -0.09
SF3B3-204ENST00000563739 RNF181Q9P0P0 153 aa14.47□□□□□ -0.09
SF3B3-204ENST00000563739 FER1L6Q2WGJ9 1857 aa14.46□□□□□ -0.09
SF3B3-204ENST00000563739 SCN7AQ01118 1682 aa14.46□□□□□ -0.09
SF3B3-204ENST00000563739 TM4SF1P30408 202 aa14.46□□□□□ -0.09
SF3B3-204ENST00000563739 INTS5Q6P9B9 1019 aaKnown RBP14.46□□□□□ -0.09
SF3B3-204ENST00000563739 AEBP1Q8IUX7 1158 aa14.46□□□□□ -0.09
SF3B3-204ENST00000563739 PARP3Q9Y6F1 533 aa14.46□□□□□ -0.09
SF3B3-204ENST00000563739 POTECB2RU33 542 aa14.45□□□□□ -0.1
SF3B3-204ENST00000563739 PIM2Q9P1W9 311 aa14.45□□□□□ -0.1
SF3B3-204ENST00000563739 RFC4P35249 363 aa14.44□□□□□ -0.1
SF3B3-204ENST00000563739 DALRD3Q5D0E6 543 aaKnown RBP14.44□□□□□ -0.1
SF3B3-204ENST00000563739 BCL2L12Q9HB09 334 aa14.44□□□□□ -0.1
SF3B3-204ENST00000563739 SOS1Q07889 1333 aaPredicted RBP14.43□□□□□ -0.1
SF3B3-204ENST00000563739 ZNF530Q6P9A1 599 aaPredicted RBP14.43□□□□□ -0.1
SF3B3-204ENST00000563739 KDM2BQ8NHM5 1336 aa14.42□□□□□ -0.1
SF3B3-204ENST00000563739 ARFGEF2Q9Y6D5 1785 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms