RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PAPPAQ13219 1627 aa13.15□□□□□ -0.3
SMG1-208ENST00000563448 ATRNO75882 1429 aa13.15□□□□□ -0.3
SMG1-208ENST00000563448 EXOC5O00471 708 aa13.15□□□□□ -0.3
SMG1-208ENST00000563448 TSPYL6Q8N831 410 aa13.15□□□□□ -0.3
SMG1-208ENST00000563448 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.3
SMG1-208ENST00000563448 UBR2Q8IWV8 1755 aa13.14□□□□□ -0.31
SMG1-208ENST00000563448 VAMP4O75379 141 aa13.14□□□□□ -0.31
SMG1-208ENST00000563448 BTBD11A6QL63 1104 aa13.13□□□□□ -0.31
SMG1-208ENST00000563448 BCAR3O75815 825 aa13.13□□□□□ -0.31
SMG1-208ENST00000563448 RARSP54136 660 aaKnown RBP13.13□□□□□ -0.31
SMG1-208ENST00000563448 RRP1P56182 461 aaKnown RBP13.13□□□□□ -0.31
SMG1-208ENST00000563448 KRT24Q2M2I5 525 aa13.13□□□□□ -0.31
SMG1-208ENST00000563448 SLC52A2Q9HAB3 445 aa13.13□□□□□ -0.31
SMG1-208ENST00000563448 C5P01031 1676 aa13.13□□□□□ -0.31
SMG1-208ENST00000563448 ELL2O00472 640 aaPredicted RBP13.13□□□□□ -0.31
SMG1-208ENST00000563448 FAM98CQ17RN3 349 aaKnown RBP13.13□□□□□ -0.31
SMG1-208ENST00000563448 TWISTNBQ3B726 338 aaPredicted RBP13.13□□□□□ -0.31
SMG1-208ENST00000563448 BRWD3Q6RI45 1802 aa13.13□□□□□ -0.31
SMG1-208ENST00000563448 KCNQ3O43525 872 aa13.12□□□□□ -0.31
SMG1-208ENST00000563448 DDB1Q16531 1140 aa13.12□□□□□ -0.31
SMG1-208ENST00000563448 NFATC2IPQ8NCF5 419 aa13.12□□□□□ -0.31
SMG1-208ENST00000563448 GJD4Q96KN9 370 aaPredicted RBP13.12□□□□□ -0.31
SMG1-208ENST00000563448 ERVV-2B6SEH9 535 aa13.11□□□□□ -0.31
SMG1-208ENST00000563448 PLIN1O60240 522 aa13.11□□□□□ -0.31
SMG1-208ENST00000563448 IRX6P78412 446 aaPredicted RBP13.11□□□□□ -0.31
SMG1-208ENST00000563448 TRPC5Q9UL62 973 aaPredicted RBP13.11□□□□□ -0.31
SMG1-208ENST00000563448 SBF2Q86WG5 1849 aa13.1□□□□□ -0.31
SMG1-208ENST00000563448 CABP4P57796 275 aa13.1□□□□□ -0.31
SMG1-208ENST00000563448 SSH1Q8WYL5 1049 aa13.1□□□□□ -0.31
SMG1-208ENST00000563448 BCL2L13Q9BXK5 485 aa13.1□□□□□ -0.31
SMG1-208ENST00000563448 LAMB4A4D0S4 1761 aa13.1□□□□□ -0.31
SMG1-208ENST00000563448 EIF4A1P60842 406 aaKnown RBP13.1□□□□□ -0.31
SMG1-208ENST00000563448 ZNF428Q96B54 188 aa13.1□□□□□ -0.31
SMG1-208ENST00000563448 NEFLP07196 543 aa13.09□□□□□ -0.31
SMG1-208ENST00000563448 SLC39A6Q13433 755 aa13.09□□□□□ -0.31
SMG1-208ENST00000563448 FKBP8Q14318 412 aa13.09□□□□□ -0.31
SMG1-208ENST00000563448 ALDH1L2Q3SY69 923 aa13.09□□□□□ -0.31
SMG1-208ENST00000563448 MARCH10Q8NA82 808 aaPredicted RBP13.09□□□□□ -0.31
SMG1-208ENST00000563448 QTRT2Q9H974 415 aaKnown RBP13.09□□□□□ -0.31
SMG1-208ENST00000563448 HEG1Q9ULI3 1381 aa13.08□□□□□ -0.32
SMG1-208ENST00000563448 ZNF790Q6PG37 636 aa13.08□□□□□ -0.32
SMG1-208ENST00000563448 SMC4Q9NTJ3 1288 aa13.07□□□□□ -0.32
SMG1-208ENST00000563448 TCERG1O14776 1098 aaKnown RBP13.06□□□□□ -0.32
SMG1-208ENST00000563448 ONECUT3O60422 494 aaPredicted RBP13.06□□□□□ -0.32
SMG1-208ENST00000563448 MRPL50Q8N5N7 158 aaKnown RBP13.06□□□□□ -0.32
SMG1-208ENST00000563448 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.06□□□□□ -0.32
SMG1-208ENST00000563448 SOS1Q07889 1333 aaPredicted RBP13.06□□□□□ -0.32
SMG1-208ENST00000563448 KCPQ6ZWJ8 1503 aa13.06□□□□□ -0.32
SMG1-208ENST00000563448 BRPF1P55201 1214 aaPredicted RBP13.05□□□□□ -0.32
SMG1-208ENST00000563448 C20orf194Q5TEA3 1177 aa13.05□□□□□ -0.32
SMG1-208ENST00000563448 FRAT1Q92837 279 aaPredicted RBP13.05□□□□□ -0.32
SMG1-208ENST00000563448 TMOD3Q9NYL9 352 aa13.05□□□□□ -0.32
SMG1-208ENST00000563448 BCL9O00512 1426 aa13.05□□□□□ -0.32
SMG1-208ENST00000563448 A0A0G2JS52 829 aa13.05□□□□□ -0.32
SMG1-208ENST00000563448 MYT1Q01538 1121 aa13.05□□□□□ -0.32
SMG1-208ENST00000563448 ZNF772Q68DY9 489 aaPredicted RBP13.05□□□□□ -0.32
SMG1-208ENST00000563448 NHSQ6T4R5 1651 aa13.05□□□□□ -0.32
SMG1-208ENST00000563448 GIGYF1O75420 1035 aaPredicted RBP13.04□□□□□ -0.32
SMG1-208ENST00000563448 HOXB7P09629 217 aa13.04□□□□□ -0.32
SMG1-208ENST00000563448 TTC5Q8N0Z6 440 aa13.04□□□□□ -0.32
SMG1-208ENST00000563448 PIGBQ92521 554 aa13.04□□□□□ -0.32
SMG1-208ENST00000563448 NOB1Q9ULX3 412 aaKnown RBP13.04□□□□□ -0.32
SMG1-208ENST00000563448 TNNQ9UQP3 1299 aa13.04□□□□□ -0.32
SMG1-208ENST00000563448 BTAF1O14981 1849 aa13.04□□□□□ -0.32
SMG1-208ENST00000563448 PRAMEF22A3QJZ6 481 aa13.03□□□□□ -0.32
SMG1-208ENST00000563448 ZNF496Q96IT1 587 aaPredicted RBP13.03□□□□□ -0.32
SMG1-208ENST00000563448 CANXP27824 592 aaKnown RBP13.03□□□□□ -0.32
SMG1-208ENST00000563448 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
SMG1-208ENST00000563448 SEPT12Q8IYM1 358 aa13.03□□□□□ -0.32
SMG1-208ENST00000563448 KIF16BQ96L93 1317 aa13.03□□□□□ -0.32
SMG1-208ENST00000563448 TJP1Q07157 1748 aa13.02□□□□□ -0.32
SMG1-208ENST00000563448 N4BP2Q86UW6 1770 aaPredicted RBP13.02□□□□□ -0.33
SMG1-208ENST00000563448 ZKSCAN2Q63HK3 967 aa13.02□□□□□ -0.33
SMG1-208ENST00000563448 NECTIN2Q92692 538 aa13.02□□□□□ -0.33
SMG1-208ENST00000563448 ACSBG1Q96GR2 724 aa13.02□□□□□ -0.33
SMG1-208ENST00000563448 FMNL2Q96PY5 1086 aa13.02□□□□□ -0.33
SMG1-208ENST00000563448 EIF2S2P20042 333 aaKnown RBP13.01□□□□□ -0.33
SMG1-208ENST00000563448 HDGFL1Q5TGJ6 251 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 CCDC30Q5VVM6 783 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 SLC4A2P04920 1241 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 PDE3AQ14432 1141 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 SYTL4Q96C24 671 aaPredicted RBP13.01□□□□□ -0.33
SMG1-208ENST00000563448 CRBNQ96SW2 442 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 ATG3Q9NT62 314 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 ASAP1Q9ULH1 1129 aa13.01□□□□□ -0.33
SMG1-208ENST00000563448 TRIM27P14373 513 aa13□□□□□ -0.33
SMG1-208ENST00000563448 RBM6P78332 1123 aaKnown RBP13□□□□□ -0.33
SMG1-208ENST00000563448 ATF7IPQ6VMQ6 1270 aa13□□□□□ -0.33
SMG1-208ENST00000563448 EXOC6Q8TAG9 804 aa13□□□□□ -0.33
SMG1-208ENST00000563448 RGS17Q9UGC6 210 aaPredicted RBP13□□□□□ -0.33
SMG1-208ENST00000563448 IPO8O15397 1037 aaKnown RBP13□□□□□ -0.33
SMG1-208ENST00000563448 SNRPA1P09661 255 aaKnown RBP13□□□□□ -0.33
SMG1-208ENST00000563448 FAM182BQ5T319 152 aa13□□□□□ -0.33
SMG1-208ENST00000563448 ERICH6BQ5W0A0 696 aa13□□□□□ -0.33
SMG1-208ENST00000563448 G2E3Q7L622 706 aa13□□□□□ -0.33
SMG1-208ENST00000563448 PANK1Q8TE04 598 aa13□□□□□ -0.33
SMG1-208ENST00000563448 ARHGAP45Q92619 1136 aa13□□□□□ -0.33
SMG1-208ENST00000563448 STK31Q9BXU1 1019 aa13□□□□□ -0.33
SMG1-208ENST00000563448 CICQ96RK0 1608 aaPredicted RBP12.99□□□□□ -0.33
SMG1-208ENST00000563448 RLBP1P12271 317 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms