RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 VAMP4O75379 141 aa17.53■□□□□ 0.4
VPS39-206ENST00000562662 DDX54Q8TDD1 881 aaKnown RBP17.53■□□□□ 0.4
VPS39-206ENST00000562662 SLC52A2Q9HAB3 445 aa17.53■□□□□ 0.4
VPS39-206ENST00000562662 DOT1LQ8TEK3 1739 aa17.52■□□□□ 0.4
VPS39-206ENST00000562662 CACNA1FO60840 1977 aa17.52■□□□□ 0.4
VPS39-206ENST00000562662 EXOC5O00471 708 aa17.52■□□□□ 0.4
VPS39-206ENST00000562662 BCAR3O75815 825 aa17.52■□□□□ 0.4
VPS39-206ENST00000562662 KRT24Q2M2I5 525 aa17.52■□□□□ 0.4
VPS39-206ENST00000562662 UBR2Q8IWV8 1755 aa17.52■□□□□ 0.4
VPS39-206ENST00000562662 BTBD11A6QL63 1104 aa17.51■□□□□ 0.39
VPS39-206ENST00000562662 TWISTNBQ3B726 338 aaPredicted RBP17.51■□□□□ 0.39
VPS39-206ENST00000562662 KAT6BQ8WYB5 2073 aa17.51■□□□□ 0.39
VPS39-206ENST00000562662 ERVV-2B6SEH9 535 aa17.5■□□□□ 0.39
VPS39-206ENST00000562662 NEFLP07196 543 aa17.5■□□□□ 0.39
VPS39-206ENST00000562662 DDB1Q16531 1140 aa17.5■□□□□ 0.39
VPS39-206ENST00000562662 ZNF428Q96B54 188 aa17.5■□□□□ 0.39
VPS39-206ENST00000562662 C5P01031 1676 aa17.49■□□□□ 0.39
VPS39-206ENST00000562662 ELL2O00472 640 aaPredicted RBP17.49■□□□□ 0.39
VPS39-206ENST00000562662 KCNQ3O43525 872 aa17.49■□□□□ 0.39
VPS39-206ENST00000562662 FAM98CQ17RN3 349 aaKnown RBP17.49■□□□□ 0.39
VPS39-206ENST00000562662 ALDH1L2Q3SY69 923 aa17.49■□□□□ 0.39
VPS39-206ENST00000562662 NFATC2IPQ8NCF5 419 aa17.49■□□□□ 0.39
VPS39-206ENST00000562662 SSH1Q8WYL5 1049 aa17.49■□□□□ 0.39
VPS39-206ENST00000562662 PLIN1O60240 522 aa17.48■□□□□ 0.39
VPS39-206ENST00000562662 EIF4A1P60842 406 aaKnown RBP17.48■□□□□ 0.39
VPS39-206ENST00000562662 IRX6P78412 446 aaPredicted RBP17.48■□□□□ 0.39
VPS39-206ENST00000562662 GJD4Q96KN9 370 aaPredicted RBP17.48■□□□□ 0.39
VPS39-206ENST00000562662 TRPC5Q9UL62 973 aaPredicted RBP17.48■□□□□ 0.39
VPS39-206ENST00000562662 CABP4P57796 275 aa17.47■□□□□ 0.39
VPS39-206ENST00000562662 FKBP8Q14318 412 aa17.47■□□□□ 0.39
VPS39-206ENST00000562662 BCL2L13Q9BXK5 485 aa17.47■□□□□ 0.39
VPS39-206ENST00000562662 HEG1Q9ULI3 1381 aa17.47■□□□□ 0.39
VPS39-206ENST00000562662 SOS1Q07889 1333 aaPredicted RBP17.47■□□□□ 0.39
VPS39-206ENST00000562662 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.46■□□□□ 0.39
VPS39-206ENST00000562662 MARCH10Q8NA82 808 aaPredicted RBP17.46■□□□□ 0.39
VPS39-206ENST00000562662 SMC4Q9NTJ3 1288 aa17.46■□□□□ 0.39
VPS39-206ENST00000562662 LAMB4A4D0S4 1761 aa17.45■□□□□ 0.38
VPS39-206ENST00000562662 BRPF1P55201 1214 aaPredicted RBP17.45■□□□□ 0.38
VPS39-206ENST00000562662 ZNF790Q6PG37 636 aa17.45■□□□□ 0.38
VPS39-206ENST00000562662 KCPQ6ZWJ8 1503 aa17.44■□□□□ 0.38
VPS39-206ENST00000562662 SLC39A6Q13433 755 aa17.44■□□□□ 0.38
VPS39-206ENST00000562662 MRPL50Q8N5N7 158 aaKnown RBP17.44■□□□□ 0.38
VPS39-206ENST00000562662 BRWD3Q6RI45 1802 aa17.44■□□□□ 0.38
VPS39-206ENST00000562662 ONECUT3O60422 494 aaPredicted RBP17.43■□□□□ 0.38
VPS39-206ENST00000562662 HOXB7P09629 217 aa17.43■□□□□ 0.38
VPS39-206ENST00000562662 QTRT2Q9H974 415 aaKnown RBP17.43■□□□□ 0.38
VPS39-206ENST00000562662 BCL9O00512 1426 aa17.42■□□□□ 0.38
VPS39-206ENST00000562662 C20orf194Q5TEA3 1177 aa17.42■□□□□ 0.38
VPS39-206ENST00000562662 KIF16BQ96L93 1317 aa17.42■□□□□ 0.38
VPS39-206ENST00000562662 SBF2Q86WG5 1849 aa17.42■□□□□ 0.38
VPS39-206ENST00000562662 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
VPS39-206ENST00000562662 TMOD3Q9NYL9 352 aa17.41■□□□□ 0.38
VPS39-206ENST00000562662 GIGYF1O75420 1035 aaPredicted RBP17.4■□□□□ 0.38
VPS39-206ENST00000562662 ERICH6BQ5W0A0 696 aa17.4■□□□□ 0.38
VPS39-206ENST00000562662 FRAT1Q92837 279 aaPredicted RBP17.4■□□□□ 0.38
VPS39-206ENST00000562662 NHSQ6T4R5 1651 aa17.39■□□□□ 0.37
VPS39-206ENST00000562662 CANXP27824 592 aaKnown RBP17.39■□□□□ 0.37
VPS39-206ENST00000562662 ZKSCAN2Q63HK3 967 aa17.39■□□□□ 0.37
VPS39-206ENST00000562662 ZNF772Q68DY9 489 aaPredicted RBP17.39■□□□□ 0.37
VPS39-206ENST00000562662 TTC5Q8N0Z6 440 aa17.39■□□□□ 0.37
VPS39-206ENST00000562662 PIGBQ92521 554 aa17.39■□□□□ 0.37
VPS39-206ENST00000562662 ZNF496Q96IT1 587 aaPredicted RBP17.39■□□□□ 0.37
VPS39-206ENST00000562662 NOB1Q9ULX3 412 aaKnown RBP17.39■□□□□ 0.37
VPS39-206ENST00000562662 TNNQ9UQP3 1299 aa17.39■□□□□ 0.37
VPS39-206ENST00000562662 A0A0G2JS52 829 aa17.38■□□□□ 0.37
VPS39-206ENST00000562662 MYT1Q01538 1121 aa17.38■□□□□ 0.37
VPS39-206ENST00000562662 PDE3AQ14432 1141 aa17.38■□□□□ 0.37
VPS39-206ENST00000562662 FMNL2Q96PY5 1086 aa17.38■□□□□ 0.37
VPS39-206ENST00000562662 PRAMEF22A3QJZ6 481 aa17.37■□□□□ 0.37
VPS39-206ENST00000562662 HDGFL1Q5TGJ6 251 aa17.37■□□□□ 0.37
VPS39-206ENST00000562662 CCDC30Q5VVM6 783 aa17.37■□□□□ 0.37
VPS39-206ENST00000562662 SEPT12Q8IYM1 358 aa17.37■□□□□ 0.37
VPS39-206ENST00000562662 CRBNQ96SW2 442 aa17.37■□□□□ 0.37
VPS39-206ENST00000562662 N4BP2Q86UW6 1770 aaPredicted RBP17.36■□□□□ 0.37
VPS39-206ENST00000562662 TRIM27P14373 513 aa17.36■□□□□ 0.37
VPS39-206ENST00000562662 PRIM1P49642 420 aaKnown RBP17.36■□□□□ 0.37
VPS39-206ENST00000562662 ATF7IPQ6VMQ6 1270 aa17.36■□□□□ 0.37
VPS39-206ENST00000562662 ARHGAP45Q92619 1136 aa17.36■□□□□ 0.37
VPS39-206ENST00000562662 TJP1Q07157 1748 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 BTAF1O14981 1849 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 IPO8O15397 1037 aaKnown RBP17.35■□□□□ 0.37
VPS39-206ENST00000562662 RLBP1P12271 317 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 EXOC6Q8TAG9 804 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 NECTIN2Q92692 538 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 ACSBG1Q96GR2 724 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 ATG3Q9NT62 314 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 RGS12O14924 1447 aa17.35■□□□□ 0.37
VPS39-206ENST00000562662 CICQ96RK0 1608 aaPredicted RBP17.35■□□□□ 0.37
VPS39-206ENST00000562662 SLC4A2P04920 1241 aa17.34■□□□□ 0.37
VPS39-206ENST00000562662 SNRPA1P09661 255 aaKnown RBP17.34■□□□□ 0.37
VPS39-206ENST00000562662 EIF2S2P20042 333 aaKnown RBP17.34■□□□□ 0.37
VPS39-206ENST00000562662 RBM6P78332 1123 aaKnown RBP17.34■□□□□ 0.37
VPS39-206ENST00000562662 PANK1Q8TE04 598 aa17.34■□□□□ 0.37
VPS39-206ENST00000562662 STK31Q9BXU1 1019 aa17.34■□□□□ 0.37
VPS39-206ENST00000562662 CHMP4AQ9BY43 222 aa17.34■□□□□ 0.37
VPS39-206ENST00000562662 ASAP1Q9ULH1 1129 aa17.34■□□□□ 0.37
VPS39-206ENST00000562662 MS4A1P11836 297 aa17.33■□□□□ 0.36
VPS39-206ENST00000562662 G2E3Q7L622 706 aa17.33■□□□□ 0.36
VPS39-206ENST00000562662 DZIP1LQ8IYY4 767 aaKnown RBP17.33■□□□□ 0.36
VPS39-206ENST00000562662 SYTL4Q96C24 671 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms